Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTG01_0011_E02
(2799 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,047,780
Number of extensions: 1206524
Number of successful extensions: 3145
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3142
Number of HSP's successfully gapped: 0
Length of query: 933
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 821
Effective length of database: 15,140,872
Effective search space: 12430655912
Effective search space used: 12430655912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTG01_0011_E02
(2799 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,637,082
Number of extensions: 1067482
Number of successful extensions: 3115
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3097
Number of HSP's successfully gapped: 0
Length of query: 933
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 821
Effective length of database: 14,605,196
Effective search space: 11990865916
Effective search space used: 11990865916
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTG01_0011_E02
(2799 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,246,505
Number of extensions: 977932
Number of successful extensions: 2524
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2511
Number of HSP's successfully gapped: 0
Length of query: 933
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 822
Effective length of database: 12,283,563
Effective search space: 10097088786
Effective search space used: 10097088786
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA PTG01_0011_E02
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTG01_0011_E02
(2799 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,719,523
Number of extensions: 2657713
Number of successful extensions: 3060
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 0
Length of query: 933
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 821
Effective length of database: 13,975,518
Effective search space: 11473900278
Effective search space used: 11473900278
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTG01_0011_E02
(2799 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,839,238
Number of extensions: 4144940
Number of successful extensions: 2159
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2144
Number of HSP's successfully gapped: 0
Length of query: 933
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 825
Effective length of database: 8,655,056
Effective search space: 7140421200
Effective search space used: 7140421200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTG01_0011_E02
(2799 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 882 0.0
>Sscrofa_Chr11
|| Length = 87690581
Score = 882 bits (445), Expect = 0.0
Identities = 507/533 (95%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 615 cagtttacccattattttctacaaatgtatcacaccaagtttggcctaagtaggcctagc 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18567196 cagtttacccattattttctacaaatgtatcacaccaagtttggcctaagtaggcctagc 18567255
Query: 675 ataaagtggacgcagaattaactgagcacgattccatttgccagttgcaagtctttattt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18567256 ataaagtggacgcagaattaactgagcacgattccatttgccagttgcaagtctttattt 18567315
Query: 735 tagcacccatggggtacacagcaccatacaagacgaggttttcggtgcatggaacaaata 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18567316 tagcacccatggggtacacagcaccatacaagacgaggttttcggtgcatggaacaaata 18567375
Query: 795 cacatgtagagaacatgaacgcatataattaaattacagctcaaaagtaagttgttctgt 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18567376 cacatgtagagaacatgaacgcatataattaaattacagctcaaaagtaagttgttctgt 18567435
Query: 855 aaaagaagcatataatggtggtttgctgagtaactaatgaaaggaaaaactcct-gaggt 913
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18567436 aaaagaagcatataatggtggtttgctgagtaactaatgaaaggaaaaactcctggaggt 18567495
Query: 914 cttgctttttgagcaggttttaagaagaggaaatgaggcaaattggggtcagaaaagaga 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18567496 cttgctttttgagcaggttttaagaagaggaaatgaggcaaattggggtcagaaaagaga 18567555
Query: 974 aacaatattaaaaaggataacttggaatagtcttgacaaacatagaaatgaattacagaa 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18567556 aacaatattaaaaaggataacttggaatagtcttgacaaacatagaaatgaattacagaa 18567615
Query: 1034 gcaagagtgtggagctgtgaaacagggnnnnnnnngcaggctctggcagcaac-nnnnnn 1092
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18567616 gcaagagtgtggagctgtgaaacagggaaaaaaaagcaggctctggcagcaacttttttt 18567675
Query: 1093 nnnnnnnnnngctttcaagccagcaggtggaagcatactccttgccaggttaa 1145
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18567676 ttttttttttgctttcaagccagcaggtggaagcatactccttgccaggttaa 18567728
Score = 571 bits (288), Expect = e-160
Identities = 314/327 (96%)
Strand = Plus / Plus
Query: 88 ttgggatcggagggccaagccgcgtccatggctgcgccctgcgcccgcgccgacggaagt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18566669 ttgggatcggagggccaagccgcgtccatggctgcgccctgcgcccgcgccgacggaagt 18566728
Query: 148 tccttttggtgagattcgaaattcgtgctgatttatttccgctgcccggggaaagtcccg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18566729 tccttttggtgagattcgaaattcgtgctgatttatttccgctgcccggggaaagtcccg 18566788
Query: 208 caggaagcgacgcaaagggtttgctggtagggttttcaaacgggaactcgcaacttctcc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18566789 caggaagcgacgcaaagggtttgctggtagggttttcaaacgggaactcgcaacttctcc 18566848
Query: 268 agatccgagtctgaactcgannnnnnnnnnnnnaaagcacgcttggcgctccccaccctg 327
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 18566849 agatccgagtctgaactcgatttttttgtttttaaagcacgcttggcgctccccaccctg 18566908
Query: 328 cccccactttccgaatggttggaggagaggtggtggaagcctttggactcagctggagaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18566909 cccccactttccgaatggttggaggagaggtggtggaagcctttggactcagctggagaa 18566968
Query: 388 atgactgcttttctgagggtctaccca 414
|||||||||||||||||||||||||||
Sbjct: 18566969 atgactgcttttctgagggtctaccca 18566995
Score = 567 bits (286), Expect = e-158
Identities = 300/307 (97%)
Strand = Plus / Plus
Query: 2476 atggtgtctgtgaaccagtacagactgaagaagattaaggtgtcagatttcagcacaaaa 2535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18569059 atggtgtctgtgaaccagtacagactgaagaagattaaggtgtcagatttcagcacaaaa 18569118
Query: 2536 atattttccatacttatcaagtgccttcatttttagtgtgttgcctaaaattcctgcatc 2595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18569119 atattttccatacttatcaagtgccttcatttttagtgtgttgcctaaaattcctgcatc 18569178
Query: 2596 tttactgtgaataaatggacttctcaactttcctcatctgtctataggatgttgggttat 2655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18569179 tttactgtgaataaatggacttctcaactttcctcatctgtctataggatgttgggttat 18569238
Query: 2656 aannnnnnngctccatttcctatctctttggttttctactctctaaaccaatttcaagtt 2715
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18569239 aatttttttgctccatttcctatctctttggttttctactctctaaaccaatttcaagtt 18569298
Query: 2716 aatatttttaagaaattatgaatttctgtttgaaaggtaaccaaatgaaacacggaatca 2775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18569299 aatatttttaagaaattatgaatttctgtttgaaaggtaaccaaatgaaacacggaatca 18569358
Query: 2776 agttcag 2782
|||||||
Sbjct: 18569359 agttcag 18569365
Score = 113 bits (57), Expect = 5e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 2 ccgcccgcccctcccgtcccgcttggtactcaccagtcgggagcgggaccccgtcct 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18566583 ccgcccgcccctcccgtcccgcttggtactcaccagtcgggagcgggaccccgtcct 18566639
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,552,242
Number of extensions: 377
Number of successful extensions: 377
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 6
Length of query: 2799
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2777
Effective length of database: 2,808,408,574
Effective search space: 7798950609998
Effective search space used: 7798950609998
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)