Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SMG01_0058_C12
(1491 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355036.1| PREDICTED: eukaryotic translation initiation... 541 e-154
Alignment gi|XP_003125563.2| PREDICTED: eukaryotic translation initiation... 541 e-154
>ref|XP_003355036.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like
isoform 2 [Sus scrofa].
Length = 352
Score = 541 bits (1393), Expect = e-154
Identities = 281/352 (79%), Positives = 282/352 (80%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGTGSAATSSSSTTGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 647
DRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
QSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
Sbjct: 181 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 240
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEED 1187
KNLQLLMDRVDEMS+DIVKYNTYLRNTSK GEPPLPEED
Sbjct: 241 KNLQLLMDRVDEMSQDIVKYNTYLRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED 300
Query: 1188 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 301 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
>ref|XP_003125563.2| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like
isoform 1 [Sus scrofa].
Length = 352
Score = 541 bits (1393), Expect = e-154
Identities = 281/352 (79%), Positives = 282/352 (80%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGTGSAATSSSSTTGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 647
DRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
QSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
Sbjct: 181 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 240
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEED 1187
KNLQLLMDRVDEMS+DIVKYNTYLRNTSK GEPPLPEED
Sbjct: 241 KNLQLLMDRVDEMSQDIVKYNTYLRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED 300
Query: 1188 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 301 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,574,608
Number of extensions: 797182
Number of successful extensions: 1978
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1973
Number of HSP's successfully gapped: 2
Length of query: 497
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,779,541
Effective search space: 3459139154
Effective search space used: 3459139154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SMG01_0058_C12
(1491 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532315.1| PREDICTED: similar to eukaryotic translation in... 536 e-152
Alignment gi|XP_860929.1| PREDICTED: similar to eukaryotic translation in... 445 e-125
Alignment gi|XP_860962.1| PREDICTED: similar to eukaryotic translation in... 424 e-118
Alignment gi|XP_855439.1| PREDICTED: similar to eukaryotic translation in... 364 e-100
Alignment gi|XP_860898.1| PREDICTED: similar to eukaryotic translation in... 159 5e-39
Alignment gi|XP_860864.1| PREDICTED: similar to eukaryotic translation in... 88 2e-17
>ref|XP_532315.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 1 [Canis familiaris].
Length = 352
Score = 536 bits (1381), Expect = e-152
Identities = 279/352 (79%), Positives = 281/352 (79%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGAGSAATSSSSTTGPAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 647
DRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
QSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
Sbjct: 181 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 240
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEED 1187
KNLQLLMDRVDEMS+DIVKYNTY+RNTSK GEPPLPEED
Sbjct: 241 KNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED 300
Query: 1188 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
LSKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 301 LSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
>ref|XP_860929.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 6 [Canis familiaris].
Length = 252
Score = 445 bits (1144), Expect = e-125
Identities = 225/252 (89%), Positives = 227/252 (90%)
Frame = +3
Query: 588 MEMMRSLRHVNIDHLHVGWYQSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQG 767
MEMMRSLRHVNIDHLHVGWYQSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQG
Sbjct: 1 MEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQG 60
Query: 768 SLSLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEK 947
SLSLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEK
Sbjct: 61 SLSLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEK 120
Query: 948 KSAVADKHELLSLASSNHLGKNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXX 1127
KSAVADKHELLSLASSNHLGKNLQLLMDRVDEMS+DIVKYNTY+RNTSK
Sbjct: 121 KSAVADKHELLSLASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQR 180
Query: 1128 XXXXXXXXXXXGEPPLPEEDLSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGK 1307
GEPPLPEEDLSKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGK
Sbjct: 181 RQQENMQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGK 240
Query: 1308 LFMAQALQEYNN 1343
LFMAQALQEYNN
Sbjct: 241 LFMAQALQEYNN 252
>ref|XP_860962.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 7 [Canis familiaris].
Length = 303
Score = 424 bits (1090), Expect = e-118
Identities = 219/269 (81%), Positives = 221/269 (82%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGAGSAATSSSSTTGPAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 647
DRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
QSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
Sbjct: 181 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 240
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSK 1094
KNLQLLMDRVDEMS+DIVKYNTY+RNTSK
Sbjct: 241 KNLQLLMDRVDEMSQDIVKYNTYMRNTSK 269
>ref|XP_855439.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa [Canis familiaris].
Length = 289
Score = 364 bits (934), Expect = e-100
Identities = 190/232 (81%), Positives = 196/232 (84%)
Frame = +3
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
Q+T V ALLDSQFSYQHA EESVVLIY+PIK AQGSLSLKAYRLTPKLMEVC+EK
Sbjct: 58 QATEVVQEVLLALLDSQFSYQHAIEESVVLIYNPIKAAQGSLSLKAYRLTPKLMEVCEEK 117
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKKGNITFEH FEEVPI IKNSHLINVL+WELEKKSAVADKHELLSLASSNHLG
Sbjct: 118 DFSPEALKKGNITFEHTFEEVPIGIKNSHLINVLLWELEKKSAVADKHELLSLASSNHLG 177
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEED 1187
KNLQLLMDRVDEMS+DIVKYNTY+RNTSK E PLPEED
Sbjct: 178 KNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKRQYQQPRRQENMQHQSQREAPLPEED 237
Query: 1188 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
LSKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 238 LSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 289
>ref|XP_860898.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 5 [Canis familiaris].
Length = 106
Score = 159 bits (403), Expect = 5e-39
Identities = 81/106 (76%), Positives = 83/106 (78%)
Frame = +3
Query: 1026 MDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEEDLSKLFK 1205
MDRVDEMS+DIVKYNTY+RNTSK GEPPLPEEDLSKLFK
Sbjct: 1 MDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSKLFK 60
Query: 1206 PHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
P QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 61 PPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 106
>ref|XP_860864.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 4 [Canis familiaris].
Length = 99
Score = 87.8 bits (216), Expect = 2e-17
Identities = 50/96 (52%), Positives = 50/96 (52%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGAGSAATSSSSTTGPAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDE 575
DRLEITNCFPFPQHTEDDADFDE
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDE 96
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,771,209
Number of extensions: 1191484
Number of successful extensions: 3137
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3128
Number of HSP's successfully gapped: 6
Length of query: 497
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 390
Effective length of database: 15,307,552
Effective search space: 5969945280
Effective search space used: 5969945280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SMG01_0058_C12
(1491 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003747.1| eukaryotic translation initiation factor 3 subu... 531 e-151
>ref|NP_003747.1| eukaryotic translation initiation factor 3 subunit H [Homo sapiens].
Length = 352
Score = 531 bits (1369), Expect = e-151
Identities = 277/352 (78%), Positives = 280/352 (79%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 647
DRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
QSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKK NITFE+MFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
Sbjct: 181 DFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 240
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEED 1187
KNLQLLMDRVDEMS+DIVKYNTY+RNTSK GEPPLPEED
Sbjct: 241 KNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED 300
Query: 1188 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
LSKLFKP QPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 301 LSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,074,883
Number of extensions: 1192546
Number of successful extensions: 3241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3239
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 390
Effective length of database: 14,770,016
Effective search space: 5760306240
Effective search space used: 5760306240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SMG01_0058_C12
(1491 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542366.1| eukaryotic translation initiation factor 3 subu... 530 e-151
>ref|NP_542366.1| eukaryotic translation initiation factor 3 subunit H [Mus musculus].
Length = 352
Score = 530 bits (1366), Expect = e-151
Identities = 275/352 (78%), Positives = 280/352 (79%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGTGSTATSSGSAGGAVGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 647
DRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
QSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKK +ITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
Sbjct: 181 DFSPEALKKASITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 240
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEED 1187
K+LQLLMDRVDEMS+DI+KYNTY+RNTSK GEPPLPEED
Sbjct: 241 KSLQLLMDRVDEMSQDIIKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED 300
Query: 1188 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
LSKLFKPHQ PARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
Sbjct: 301 LSKLFKPHQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 352
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,798,715
Number of extensions: 1018297
Number of successful extensions: 2850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2847
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 392
Effective length of database: 12,463,779
Effective search space: 4885801368
Effective search space used: 4885801368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SMG01_0058_C12
(1491 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020493.1| eukaryotic translation initiation factor 3 s... 536 e-152
>ref|NP_001020493.1| eukaryotic translation initiation factor 3 subunit H [Bos taurus].
Length = 352
Score = 536 bits (1380), Expect = e-152
Identities = 278/352 (78%), Positives = 281/352 (79%)
Frame = +3
Query: 288 MASRKEXXXXXXXXXXXXXXXXXXXXXXXXXXDSAVKQVQIDGLVVLKIIKHYXXXXXXX 467
MASRKE DSAVKQVQIDGLVVLKIIKHY
Sbjct: 1 MASRKEGTGSSATSSSSTTGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT 60
Query: 468 XXXXXXXXXXXXXDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 647
DRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
Sbjct: 61 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY 120
Query: 648 QSTYYGSFVARALLDSQFSYQHATEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 827
QSTYYGSFV RALLDSQFSYQHA EESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
Sbjct: 121 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180
Query: 828 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 1007
DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
Sbjct: 181 DFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG 240
Query: 1008 KNLQLLMDRVDEMSRDIVKYNTYLRNTSKXXXXXXXXXXXXXXXXXXXXXXGEPPLPEED 1187
K LQLLMDRVDEMS+DIVKYNTY+RNTSK GEPPLPEED
Sbjct: 241 KTLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED 300
Query: 1188 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN 1343
LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYN+
Sbjct: 301 LSKLFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNS 352
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,804,958
Number of extensions: 1190239
Number of successful extensions: 3123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3120
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 391
Effective length of database: 14,174,046
Effective search space: 5542051986
Effective search space used: 5542051986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SMG01_0058_C12
(1491 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 523 e-146
Sscrofa_Chr04 420 e-115
Sscrofa_Chr07 90 4e-15
>Sscrofa_Chr02
|| Length = 162569375
Score = 523 bits (264), Expect = e-146
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1 gatttttgtggtgatattgggacccagtcctgaaagcttgggtttttggggtgtgctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60557268 gatttttgtggtgatattgggacccagtcctgaaagcttgggtttttggggtgtgctttg 60557327
Query: 61 ttggtgggtagtttcaaggttgcaaaacagtaagcctcatttgaggaaatacaatatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60557328 ttggtgggtagtttcaaggttgcaaaacagtaagcctcatttgaggaaatacaatatttt 60557387
Query: 121 gcacagaagcttcttggaaggaagtcctggtttaattgccaaaatgacatgctggtggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60557388 gcacagaagcttcttggaaggaagtcctggtttaattgccaaaatgacatgctggtggtc 60557447
Query: 181 agggctcagattccacaggtgttggatttgtttgttgtggttttcgaaatcctgacttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60557448 agggctcagattccacaggtgttggatttgtttgttgtggttttcgaaatcctgacttgt 60557507
Query: 241 aggtaacctggtgcgaggaaaaac 264
||||||||||||||||||||||||
Sbjct: 60557508 aggtaacctggtgcgaggaaaaac 60557531
>Sscrofa_Chr04
|| Length = 143465943
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 1246 caggccagattaacacttactgccagaacatcaaggagttcactgcccaaaacttaggca 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23448658 caggccagattaacacttactgccagaacatcaaggagttcactgcccaaaacttaggca 23448717
Query: 1306 aactcttcatggcccaggctcttcaagaatacaacaactaagaaaaggaagtttccagaa 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23448718 aactcttcatggcccaggctcttcaagaatacaacaactaagaaaaggaagtttccagaa 23448777
Query: 1366 aaggagttaacatggactcttgagatcacattggggcgacttttggaagaaacacacttg 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23448778 aaggagttaacatggactcttgagatcacattggggcgacttttggaagaaacacacttg 23448837
Query: 1426 catattgaaaagtctttctagcacataataat 1457
||||||||||||||||||||||||||||||||
Sbjct: 23448838 catattgaaaagtctttctagcacataataat 23448869
Score = 321 bits (162), Expect = 6e-85
Identities = 168/170 (98%)
Strand = Plus / Plus
Query: 575 agttcaatatcagatggaaatgatgcgcagccttcgccacgtaaacattgaccatctcca 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23434124 agttcaatatcagatggaaatgatgcgcagccttcgccacgtaaacattgaccatctcca 23434183
Query: 635 tgtgggctggtaccagtccacatactatggctcttttgtcgcccgggcacttctggattc 694
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 23434184 tgtgggctggtaccagtccacatactatggctcttttgtcacccgggcacttctggattc 23434243
Query: 695 tcagtttagttaccagcatgcgactgaagagtctgttgttctcatttacg 744
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 23434244 tcagtttagttaccagcatgcgattgaagagtctgttgttctcatttacg 23434293
Score = 315 bits (159), Expect = 4e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 264 cctttttcctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgcc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23195750 cctttttcctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgcc 23195691
Query: 324 acctcttccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctgga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23195690 acctcttccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctgga 23195631
Query: 384 gattcggcggtgaagcaagtgcagatagatggcttggtg 422
|||||||||||||||||||||||||||||||||||||||
Sbjct: 23195630 gattcggcggtgaagcaagtgcagatagatggcttggtg 23195592
Score = 315 bits (159), Expect = 4e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 264 cctttttcctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgcc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23327995 cctttttcctgtccggctaggaagatggcgtcccgcaaggaaggcactggttctgccgcc 23328054
Query: 324 acctcttccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctgga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328055 acctcttccagctccaccaccggcgctgctgggaaaggcaaaggcaaaggagggtctgga 23328114
Query: 384 gattcggcggtgaagcaagtgcagatagatggcttggtg 422
|||||||||||||||||||||||||||||||||||||||
Sbjct: 23328115 gattcggcggtgaagcaagtgcagatagatggcttggtg 23328153
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 419 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgaggtggttca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23170918 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgaggtggttca 23170859
Query: 479 aggagtgcttttgggccttgttgtagaagatcgacttgaaattaccaactgctttccttt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23170858 aggagtgcttttgggccttgttgtagaagatcgacttgaaattaccaactgctttccttt 23170799
Query: 539 tccccagcacacagaagatgatgctgactttgatgaag 576
||||||||||||||||||||||||||||||||||||||
Sbjct: 23170798 tccccagcacacagaagatgatgctgactttgatgaag 23170761
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 419 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgaggtggttca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23352826 ggtggtcttgaagattatcaaacattaccaagaagaaggacaaggaactgaggtggttca 23352885
Query: 479 aggagtgcttttgggccttgttgtagaagatcgacttgaaattaccaactgctttccttt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23352886 aggagtgcttttgggccttgttgtagaagatcgacttgaaattaccaactgctttccttt 23352945
Query: 539 tccccagcacacagaagatgatgctgactttgatgaag 576
||||||||||||||||||||||||||||||||||||||
Sbjct: 23352946 tccccagcacacagaagatgatgctgactttgatgaag 23352983
Score = 297 bits (150), Expect = 9e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 845 attgaaaaagggaaatatcacctttgagcacatgtttgaagaagtgccgattgtcattaa 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23437103 attgaaaaagggaaatatcacctttgagcacatgtttgaagaagtgccgattgtcattaa 23437162
Query: 905 aaattcacatctgatcaatgtcctaatgtgggagcttgagaagaagtcagctgtagcaga 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23437163 aaattcacatctgatcaatgtcctaatgtgggagcttgagaagaagtcagctgtagcaga 23437222
Query: 965 taaacatgaattgctcagtcttgccagcag 994
||||||||||||||||||||||||||||||
Sbjct: 23437223 taaacatgaattgctcagtcttgccagcag 23437252
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1114 agtatcagcagcgccgccagcaggagaatatgcagcgccagagtcgaggagaaccgccac 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23447140 agtatcagcagcgccgccagcaggagaatatgcagcgccagagtcgaggagaaccgccac 23447199
Query: 1174 tccctgaggaggacctgtccaagctcttcaagccgcaccagccccctgccaggatggatt 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23447200 tccctgaggaggacctgtccaagctcttcaagccgcaccagccccctgccaggatggatt 23447259
Query: 1234 cactgctcattgcagg 1249
||||||||||||||||
Sbjct: 23447260 cactgctcattgcagg 23447275
Score = 238 bits (120), Expect = 7e-60
Identities = 123/124 (99%)
Strand = Plus / Plus
Query: 992 cagcaatcatttggggaagaacctccagttgctgatggacagagtggatgaaatgagccg 1051
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23444469 cagcaatcatttggggaagaacctccagttgctgatggacagagtggatgaaatgagcca 23444528
Query: 1052 agatatagttaaatataacacatatctgaggaacacgagtaaacagcagcagcagaaaca 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23444529 agatatagttaaatataacacatatctgaggaacacgagtaaacagcagcagcagaaaca 23444588
Query: 1112 tcag 1115
||||
Sbjct: 23444589 tcag 23444592
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 744 gatcccataaaaactgcccaaggatctctctcactaaaggcatacagactgactcctaaa 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23435803 gatcccataaaaactgcccaaggatctctctcactaaaggcatacagactgactcctaaa 23435862
Query: 804 ctgatggaagtttgtaaagagaaggatttttctcccgaagc 844
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 23435863 ctgatggaagtttgtaaagagaaggatttttctcccgaagc 23435903
>Sscrofa_Chr07
|| Length = 134764511
Score = 89.7 bits (45), Expect = 4e-15
Identities = 113/133 (84%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 104 aggaaatacaatattttgcacagaagcttcttggaaggaagtcctggtttaattgccaaa 163
|||||||||| |||||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 119830218 aggaaatacagcgttttgcacagcagcttctttgaaaggagtcctggtttaattgccaaa 119830159
Query: 164 atgacatgctggtggtcagggctcag-attccacaggtgttggatttgtttgttgtggtt 222
|||| | || ||||| || || ||| || ||||||||||| || ||| |||||||||||
Sbjct: 119830158 atgaaacgcaggtgggcactgcccagaatcccacaggtgtttga-ttgcttgttgtggtt 119830100
Query: 223 ttcgaaatcctga 235
|| ||||||||||
Sbjct: 119830099 tttgaaatcctga 119830087
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,112,140
Number of extensions: 309
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 12
Length of query: 1491
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1470
Effective length of database: 2,808,413,156
Effective search space: 4128367339320
Effective search space used: 4128367339320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)