Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0001_D02
(1238 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_978162.1| PREDICTED: complement C4-B-like isoform 5 [Mus ... 554 e-158
Alignment gi|NP_033910.2| complement C4-B precursor [Mus musculus]. 554 e-158
Alignment gi|NP_035543.2| sex-limited protein [Mus musculus]. 540 e-153
Alignment gi|NP_033908.2| complement C3 [Mus musculus]. 139 5e-33
Alignment gi|XP_003086840.1| PREDICTED: complement C3-like, partial [Mus ... 116 3e-26
Alignment gi|NP_034536.1| complement C5 preproprotein [Mus musculus]. 97 3e-20
Alignment gi|NP_032672.2| murinoglobulin-2 precursor [Mus musculus]. 58 2e-08
Alignment gi|NP_032671.2| murinoglobulin-1 precursor [Mus musculus]. 56 7e-08
Alignment gi|XP_001480324.2| PREDICTED: murinoglobulin-1-like [Mus muscul... 54 3e-07
Alignment gi|XP_922625.4| PREDICTED: murinoglobulin-1-like [Mus musculus]. 54 3e-07
>ref|XP_978162.1| PREDICTED: complement C4-B-like isoform 5 [Mus musculus].
Length = 1738
Score = 554 bits (1427), Expect = e-158
Identities = 270/364 (74%), Positives = 302/364 (82%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLKILR YNV+D+KNTTCQDLQIEV V G VEY +AN +PA DDP
Sbjct: 1372 GTLKILRTYNVLDMKNTTCQDLQIEVKVTGAVEYAWDANEDYEDYYD--MPAADDPSVPL 1429
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAPKV EEQESRVQYTVCIWRNG++GLSGMAIADITLLSGF+
Sbjct: 1430 QPVTPLQLFEGRKSRRRREAPKVVEEQESRVQYTVCIWRNGKLGLSGMAIADITLLSGFH 1489
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQP+SAV
Sbjct: 1490 ALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPSSAV 1549
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR R+LER ++D DGYRM+
Sbjct: 1550 LYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYRMR 1609
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY PRV+Y F VKVLRED RAAFRLFE+ ITQVLHF KD A+ Q RNFL RASCRL
Sbjct: 1610 FACYYPRVEYGFTVKVLREDGRAAFRLFESKITQVLHFRKDTMASIGQTRNFLSRASCRL 1669
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR C QL+DF+
Sbjct: 1670 RLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDFLM 1729
Query: 1081 EYST 1092
E+S+
Sbjct: 1730 EFSS 1733
>ref|NP_033910.2| complement C4-B precursor [Mus musculus].
Length = 1738
Score = 554 bits (1427), Expect = e-158
Identities = 270/364 (74%), Positives = 302/364 (82%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLKILR YNV+D+KNTTCQDLQIEV V G VEY +AN +PA DDP
Sbjct: 1372 GTLKILRTYNVLDMKNTTCQDLQIEVKVTGAVEYAWDANEDYEDYYD--MPAADDPSVPL 1429
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAPKV EEQESRVQYTVCIWRNG++GLSGMAIADITLLSGF+
Sbjct: 1430 QPVTPLQLFEGRRSRRRREAPKVVEEQESRVQYTVCIWRNGKLGLSGMAIADITLLSGFH 1489
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQP+SAV
Sbjct: 1490 ALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPSSAV 1549
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR R+LER ++D DGYRM+
Sbjct: 1550 LYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYRMR 1609
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY PRV+Y F VKVLRED RAAFRLFE+ ITQVLHF KD A+ Q RNFL RASCRL
Sbjct: 1610 FACYYPRVEYGFTVKVLREDGRAAFRLFESKITQVLHFRKDTMASIGQTRNFLSRASCRL 1669
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR C QL+DF+
Sbjct: 1670 RLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDFLM 1729
Query: 1081 EYST 1092
E+S+
Sbjct: 1730 EFSS 1733
>ref|NP_035543.2| sex-limited protein [Mus musculus].
Length = 1735
Score = 540 bits (1390), Expect = e-153
Identities = 265/364 (72%), Positives = 297/364 (81%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLKILR YNV+D+KNTTCQDLQIEV V VEY A +PA DDP
Sbjct: 1369 GTLKILRTYNVLDMKNTTCQDLQIEVKVTDAVEYAWSA--YEDYEDDYNMPATDDPSVPL 1426
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAPKVAEE+ESRV YTVCIWRNG++GLSGMAIADITLLSGF+
Sbjct: 1427 QPVTPLQLFEGRRSRRRREAPKVAEERESRVHYTVCIWRNGKLGLSGMAIADITLLSGFH 1486
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQPASAV
Sbjct: 1487 ALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPASAV 1546
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR R+LER ++D DGYRM+
Sbjct: 1547 LYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYRMR 1606
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY +V+Y F VKVLRED RAAFRLFE+ ITQVLHF D A+ Q RNFL RASCRL
Sbjct: 1607 FACYYHQVEYGFTVKVLREDGRAAFRLFESKITQVLHFRTDTMASIGQTRNFLSRASCRL 1666
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR C QL+DF+
Sbjct: 1667 RLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDFLM 1726
Query: 1081 EYST 1092
E+S+
Sbjct: 1727 EFSS 1730
>ref|NP_033908.2| complement C3 [Mus musculus].
Length = 1663
Score = 139 bits (350), Expect = 5e-33
Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 8/290 (2%)
Frame = +1
Query: 235 EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 414
E K EE ++ + +C G V + M+I DI++++GF + DLE L S DRY+S
Sbjct: 1372 ETAKKPEEAKNTMFLEICTKYLGDVDAT-MSILDISMMTGFAPDTKDLELLASGVDRYIS 1430
Query: 415 HFETEGPH-----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 576
+E +++Y + + T +C+ F Q +GL+QP S +Y YYN E C+
Sbjct: 1431 KYEMNKAFSNKNTLIIYLEKISHTEEDCLTFKVHQYFNVGLIQPGSVKVYSYYNLEESCT 1490
Query: 577 VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 756
FY LS LC +++C+CAE C Q+ + L R+ AC P VDY +
Sbjct: 1491 RFYHPEKDDGMLSKLCHSEMCRCAEENCFMQQSQEKINL----NVRLDKAC-EPGVDYVY 1545
Query: 757 QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 930
+ ++ + F + +I QV+ D + A Q R F+ CR L L+ GK+YL+
Sbjct: 1546 KTELTNIELLDDFDEYTMTIQQVIKSGSD-EVQAGQQRKFISHIKCRNALKLQKGKKYLM 1604
Query: 931 MGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
GL K + Y++ + W+E P C+ ++++ C +L F +
Sbjct: 1605 WGLSSDLWGEKPNTSYIIGKDTWVEHWPEAEECQDQKYQKQCEELGAFTE 1654
>ref|XP_003086840.1| PREDICTED: complement C3-like, partial [Mus musculus].
Length = 1524
Score = 116 bits (291), Expect = 3e-26
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 8/253 (3%)
Frame = +1
Query: 235 EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 414
E K EE ++ + +C G V + M+I DI++++GF + DLE L S DRY+S
Sbjct: 1281 ETAKKPEEAKNTMFLEICTKYLGDVDAT-MSILDISMMTGFAPDTKDLELLASGVDRYIS 1339
Query: 415 HFETEGPH-----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 576
+E +++Y + + T +C+ F Q +GL+QP S +Y YYN E C+
Sbjct: 1340 KYEMNKAFSNKNTLIIYLEKISHTEEDCLTFKVHQYFNVGLIQPGSVKVYSYYNLEESCT 1399
Query: 577 VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 756
FY LS LC +++C+CAE C Q+ + L R+ AC P VDY +
Sbjct: 1400 RFYHPEKDDGMLSKLCHSEMCRCAEENCFMQQSQEKINL----NVRLDKAC-EPGVDYVY 1454
Query: 757 QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 930
+ ++ F + +I QV+ D + A Q R F+ CR L L+ GK+YL+
Sbjct: 1455 KTELTNIKLLDDFDEYTMTIQQVIKSGSD-EVQAGQQRKFISHIKCRNALKLQKGKKYLM 1513
Query: 931 MGLDGTTHDLKGD 969
GL + DL G+
Sbjct: 1514 WGL---SSDLWGE 1523
>ref|NP_034536.1| complement C5 preproprotein [Mus musculus].
Length = 1680
Score = 96.7 bits (239), Expect = 3e-20
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 5/245 (2%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE--CVGF 489
S A+ DI+L +G A DL L D+ ++ ++ + HV+L +S+P SR+ CV F
Sbjct: 1423 SSHAVMDISLPTGIGANEEDLRALVEGVDQLLTDYQIKDGHVILQLNSIP-SRDFLCVRF 1481
Query: 490 GAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQ 669
+ +G + PA+ +Y+Y+ P+ +C++ Y L +C C C E C +
Sbjct: 1482 RIFELFQVGFLNPATFTVYEYHRPDKQCTMIYSISDTR--LQKVCEGAACTCVEADCAQL 1539
Query: 670 RRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVK 849
+ ++ + R + AC P YA++V++ F + + T ++ +
Sbjct: 1540 QAEVDLAIS--ADSRKEKAC-KPETAYAYKVRITSATEENVF--VKYTATLLVTYKTGEA 1594
Query: 850 AAAAQARNFLVRASC-RLHLEPGKEYLIMGLD--GTTHDLKGDPQYLLDSNCWIEEMPSE 1020
A F+ + SC +L GK+YLIMG + H+ Y LDS+ WIE P++
Sbjct: 1595 ADENSEVTFIKKMSCTNANLVKGKQYLIMGKEVLQIKHNFSFKYIYPLDSSTWIEYWPTD 1654
Query: 1021 RLCRS 1035
C S
Sbjct: 1655 TTCPS 1659
>ref|NP_032672.2| murinoglobulin-2 precursor [Mus musculus].
Length = 1451
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/110 (31%), Positives = 53/110 (48%)
Frame = +1
Query: 274 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 453
Q ++ I G S M IAD+ +LSGF + ++KL L ++S E +VLLY
Sbjct: 1339 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLERLE--HISRTEVSNNNVLLYL 1396
Query: 454 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 603
D V F Q++++ +QPA +YDYY + Y +P S
Sbjct: 1397 DQVTNQTLAFSFIIQQDISVRNLQPAIVKVYDYYETDEVAYAEYSSPCSS 1446
>ref|NP_032671.2| murinoglobulin-1 precursor [Mus musculus].
Length = 1476
Score = 55.8 bits (133), Expect = 7e-08
Identities = 34/107 (31%), Positives = 51/107 (47%)
Frame = +1
Query: 274 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 453
Q ++ I G S M IAD+ +LSGF + ++KL L +VS E +VL+Y
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLERLE--HVSRTEVSNNNVLIYL 1421
Query: 454 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 594
D V F Q++ + +QPA +YDYY + Y +P
Sbjct: 1422 DQVTNQTLAFSFIIQQDIPVRNLQPAIVKVYDYYETDEMAFAEYSSP 1468
>ref|XP_001480324.2| PREDICTED: murinoglobulin-1-like [Mus musculus].
Length = 1472
Score = 53.5 bits (127), Expect = 3e-07
Identities = 35/110 (31%), Positives = 52/110 (47%)
Frame = +1
Query: 274 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 453
Q ++ I G S M IAD+ +LSGF + ++KL SL+ V E +VLLY
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLESLAP--VRRTEVSSNNVLLYL 1421
Query: 454 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 603
D V + F Q+ + +QPA +YDYY + Y P ++
Sbjct: 1422 DQVNSHTLAFSFIIQQDFLVRNLQPAMVKVYDYYETDEVAFAEYSNPCRT 1471
>ref|XP_922625.4| PREDICTED: murinoglobulin-1-like [Mus musculus].
Length = 1472
Score = 53.5 bits (127), Expect = 3e-07
Identities = 35/110 (31%), Positives = 52/110 (47%)
Frame = +1
Query: 274 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 453
Q ++ I G S M IAD+ +LSGF + ++KL SL+ V E +VLLY
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLESLAP--VRRTEVSSNNVLLYL 1421
Query: 454 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 603
D V + F Q+ + +QPA +YDYY + Y P ++
Sbjct: 1422 DQVNSHTLAFSFIIQQDFLVRNLQPAMVKVYDYYETDEVAFAEYSNPCRT 1471
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,373,565
Number of extensions: 1296551
Number of successful extensions: 5487
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5398
Number of HSP's successfully gapped: 11
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0001_D02
(1238 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403643.1| PREDICTED: complement C4-A isoform 1 [Homo s... 611 e-175
Alignment gi|NP_001002029.3| complement C4-B preproprotein [Homo sapiens]. 611 e-175
Alignment gi|NP_001229752.1| complement C4-B-like preproprotein [Homo sap... 611 e-175
Alignment gi|NP_009224.2| complement C4-A preproprotein [Homo sapiens]. 611 e-175
Alignment gi|XP_003403644.1| PREDICTED: complement C4-A isoform 2 [Homo s... 509 e-144
Alignment gi|NP_000055.2| complement C3 precursor [Homo sapiens]. 121 1e-27
Alignment gi|NP_001726.2| complement C5 preproprotein [Homo sapiens]. 99 1e-20
Alignment gi|NP_056507.2| C3 and PZP-like alpha-2-macroglobulin domain-co... 76 6e-14
Alignment gi|NP_001153060.1| CD109 antigen isoform 3 precursor [Homo sapi... 57 4e-08
Alignment gi|NP_001153059.1| CD109 antigen isoform 2 precursor [Homo sapi... 57 4e-08
>ref|XP_003403643.1| PREDICTED: complement C4-A isoform 1 [Homo sapiens].
Length = 1744
Score = 611 bits (1575), Expect = e-175
Identities = 300/364 (82%), Positives = 318/364 (87%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1376 GTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDAPL 1435
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSGF+
Sbjct: 1436 QPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSGFH 1495
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPASA
Sbjct: 1496 ALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPASAT 1555
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYRMK
Sbjct: 1556 LYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYRMK 1615
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASCRL
Sbjct: 1616 FACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASCRL 1675
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF+Q
Sbjct: 1676 RLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDFLQ 1735
Query: 1081 EYST 1092
EY T
Sbjct: 1736 EYGT 1739
>ref|NP_001002029.3| complement C4-B preproprotein [Homo sapiens].
Length = 1744
Score = 611 bits (1575), Expect = e-175
Identities = 300/364 (82%), Positives = 318/364 (87%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1376 GTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDAPL 1435
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSGF+
Sbjct: 1436 QPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSGFH 1495
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPASA
Sbjct: 1496 ALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPASAT 1555
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYRMK
Sbjct: 1556 LYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYRMK 1615
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASCRL
Sbjct: 1616 FACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASCRL 1675
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF+Q
Sbjct: 1676 RLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDFLQ 1735
Query: 1081 EYST 1092
EY T
Sbjct: 1736 EYGT 1739
>ref|NP_001229752.1| complement C4-B-like preproprotein [Homo sapiens].
Length = 1744
Score = 611 bits (1575), Expect = e-175
Identities = 300/364 (82%), Positives = 318/364 (87%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1376 GTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDAPL 1435
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSGF+
Sbjct: 1436 QPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSGFH 1495
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPASA
Sbjct: 1496 ALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPASAT 1555
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYRMK
Sbjct: 1556 LYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYRMK 1615
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASCRL
Sbjct: 1616 FACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASCRL 1675
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF+Q
Sbjct: 1676 RLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDFLQ 1735
Query: 1081 EYST 1092
EY T
Sbjct: 1736 EYGT 1739
>ref|NP_009224.2| complement C4-A preproprotein [Homo sapiens].
Length = 1744
Score = 611 bits (1575), Expect = e-175
Identities = 300/364 (82%), Positives = 318/364 (87%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1376 GTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDAPL 1435
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSGF+
Sbjct: 1436 QPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSGFH 1495
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPASA
Sbjct: 1496 ALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPASAT 1555
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYRMK
Sbjct: 1556 LYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYRMK 1615
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASCRL
Sbjct: 1616 FACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASCRL 1675
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF+Q
Sbjct: 1676 RLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDFLQ 1735
Query: 1081 EYST 1092
EY T
Sbjct: 1736 EYGT 1739
>ref|XP_003403644.1| PREDICTED: complement C4-A isoform 2 [Homo sapiens].
Length = 1698
Score = 509 bits (1312), Expect = e-144
Identities = 260/364 (71%), Positives = 275/364 (75%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1376 GTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDAPL 1435
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLF+ EAP
Sbjct: 1436 QPVTPLQLFEGRRNRRRREAP--------------------------------------- 1456
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
KLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPASA
Sbjct: 1457 -------KLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPASAT 1509
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYRMK
Sbjct: 1510 LYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYRMK 1569
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASCRL
Sbjct: 1570 FACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASCRL 1629
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF+Q
Sbjct: 1630 RLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDFLQ 1689
Query: 1081 EYST 1092
EY T
Sbjct: 1690 EYGT 1693
>ref|NP_000055.2| complement C3 precursor [Homo sapiens].
Length = 1663
Score = 121 bits (304), Expect = 1e-27
Identities = 80/290 (27%), Positives = 141/290 (48%), Gaps = 8/290 (2%)
Frame = +1
Query: 235 EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 414
E K ++ ++ + +C G + M+I DI++++GF + DL++L + DRY+S
Sbjct: 1372 ETEKRPQDAKNTMILEICTRYRGDQDAT-MSILDISMMTGFAPDTDDLKQLANGVDRYIS 1430
Query: 415 HFETEGPH-----VLLYFDSVPTSRE-CVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 576
+E + +++Y D V S + C+ F Q + L+QP + +Y YYN E C+
Sbjct: 1431 KYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCT 1490
Query: 577 VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 756
FY + L+ LC ++C+CAE C Q+ + L++ R+ AC P VDY +
Sbjct: 1491 RFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEE----RLDKAC-EPGVDYVY 1545
Query: 757 QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 930
+ ++++ F + +I Q + D + Q R F+ CR L LE K YL+
Sbjct: 1546 KTRLVKVQLSNDFDEYIMAIEQTIKSGSD-EVQVGQQRTFISPIKCREALKLEEKKHYLM 1604
Query: 931 MGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
GL K + Y++ + W+E P E C+ +++ C L F +
Sbjct: 1605 WGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTE 1654
>ref|NP_001726.2| complement C5 preproprotein [Homo sapiens].
Length = 1676
Score = 98.6 bits (244), Expect = 1e-20
Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 4/244 (1%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 492
S A+ DI+L +G A DL+ L D+ + ++ + HV+L +S+P+S CV F
Sbjct: 1419 SSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFR 1478
Query: 493 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 672
+ +G + PA+ +Y+Y+ P+ +C++FY + + +C C+C E C + +
Sbjct: 1479 IFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIK--IQKVCEGAACKCVEADCGQMQ 1536
Query: 673 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 852
L+ L R + AC P + YA++V + F ++ ++ + + T + A
Sbjct: 1537 EELD--LTISAETRKQTAC-KPEIAYAYKVSITSITVENVFVKYKATLLDI-YKTGEAVA 1592
Query: 853 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDGTTHDLKGDPQYL--LDSNCWIEEMPSER 1023
F+ + +C L G++YLIMG + +Y+ LDS WIE P +
Sbjct: 1593 EKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNFSFRYIYPLDSLTWIEYWPRDT 1652
Query: 1024 LCRS 1035
C S
Sbjct: 1653 TCSS 1656
>ref|NP_056507.2| C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8
[Homo sapiens].
Length = 1932
Score = 76.3 bits (186), Expect = 6e-14
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +1
Query: 259 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPH 438
QE +V VC R G S MA+ ++ LLSGF A+ LE+L + +E G
Sbjct: 1598 QEYKVMLEVCT-RWLHAGSSNMAVLEVPLLSGFRADIESLEQLLLDKHMGMKRYEVAGRR 1656
Query: 439 VLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLS 615
VL YFD +P+ CV F A++E +G +YDYY P + + FY + S
Sbjct: 1657 VLFYFDEIPSRCLTCVRFRALRECVVGRTSALPVSVYDYYEPAFEATRFYNVSTHSPLAR 1716
Query: 616 TLCSADVCQCAE 651
LC+ C E
Sbjct: 1717 ELCAGPACNEVE 1728
>ref|NP_001153060.1| CD109 antigen isoform 3 precursor [Homo sapiens].
Length = 1368
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/142 (31%), Positives = 65/142 (45%)
Frame = +1
Query: 238 APKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSH 417
A K ++ + V VC +G G SGMA+ ++ LLSGF + SLS+ V
Sbjct: 1209 AVKENKDDLNHVDLNVCTSFSGP-GRSGMALMEVNLLSGFMVP----SEAISLSET-VKK 1262
Query: 418 FETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPS 597
E + + LY DSV ++ CV AV+ + Q AS + DYY P + Y +
Sbjct: 1263 VEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEV 1322
Query: 598 KSKFLSTLCSADVCQCAEGKCP 663
K L S D+C +G P
Sbjct: 1323 K------LSSCDLCSDVQGCRP 1338
>ref|NP_001153059.1| CD109 antigen isoform 2 precursor [Homo sapiens].
Length = 1428
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/142 (31%), Positives = 65/142 (45%)
Frame = +1
Query: 238 APKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSH 417
A K ++ + V VC +G G SGMA+ ++ LLSGF + SLS+ V
Sbjct: 1269 AVKENKDDLNHVDLNVCTSFSGP-GRSGMALMEVNLLSGFMVP----SEAISLSET-VKK 1322
Query: 418 FETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPS 597
E + + LY DSV ++ CV AV+ + Q AS + DYY P + Y +
Sbjct: 1323 VEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEV 1382
Query: 598 KSKFLSTLCSADVCQCAEGKCP 663
K L S D+C +G P
Sbjct: 1383 K------LSSCDLCSDVQGCRP 1398
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,380,721
Number of extensions: 1579336
Number of successful extensions: 7624
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7558
Number of HSP's successfully gapped: 16
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0001_D02
(1238 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538843.2| PREDICTED: similar to Complement C4 precursor [... 592 e-169
Alignment gi|XP_855532.1| PREDICTED: similar to Complement C5 precursor [... 103 3e-22
Alignment gi|XP_533932.2| PREDICTED: similar to Complement C3 precursor [... 91 2e-18
Alignment gi|XP_852711.1| PREDICTED: similar to C3 and PZP-like, alpha-2-... 76 6e-14
Alignment gi|XP_534893.2| PREDICTED: similar to Alpha-2-macroglobulin pre... 54 4e-07
Alignment gi|XP_854216.1| PREDICTED: similar to Alpha-2-macroglobulin pre... 52 1e-06
Alignment gi|XP_542077.2| PREDICTED: similar to Complement C3 precursor [... 50 4e-06
Alignment gi|XP_854220.1| PREDICTED: similar to pregnancy-zone protein [C... 49 8e-06
>ref|XP_538843.2| PREDICTED: similar to Complement C4 precursor [Canis familiaris].
Length = 1587
Score = 592 bits (1527), Expect = e-169
Identities = 294/366 (80%), Positives = 311/366 (84%), Gaps = 2/366 (0%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLE--ANXXXXXXXXXXLPAQDDPGA 174
G LKILR YNV+DLKNTTC+DLQIEV+V GHVEY E AN +PA+DDP A
Sbjct: 1217 GILKILRTYNVLDLKNTTCEDLQIEVSVVGHVEYTSEWEANEDYEDYVYEEVPAKDDPDA 1276
Query: 175 HSQPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 354
SQ VTPL+LF+ EAPK EE+ESRVQYTVCIWRNG+VGLSGMAIADITLLSG
Sbjct: 1277 SSQTVTPLELFERRRNRRRREAPKAPEEEESRVQYTVCIWRNGKVGLSGMAIADITLLSG 1336
Query: 355 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 534
F A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEV +GLVQPAS
Sbjct: 1337 FSALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVPVGLVQPAS 1396
Query: 535 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 714
A LYDYYNPEHKCSVFYGAP++SK LSTLCSADVCQCAEGKCPRQRRALERGLQD GYR
Sbjct: 1397 AALYDYYNPEHKCSVFYGAPTRSKLLSTLCSADVCQCAEGKCPRQRRALERGLQDEAGYR 1456
Query: 715 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 894
M+FACY PRV Y FQVKVLRED RAAFRLFETSITQV+HFTKD KA Q RNFLVR SC
Sbjct: 1457 MRFACYYPRVQYGFQVKVLREDGRAAFRLFETSITQVIHFTKDTKAKVGQTRNFLVRDSC 1516
Query: 895 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1074
RL LEPGKEYLIMGLDG T DLKGDPQYLLDSN WIEEMPS+RLC+STRHR CAQL DF
Sbjct: 1517 RLRLEPGKEYLIMGLDGATSDLKGDPQYLLDSNSWIEEMPSKRLCQSTRHRAACAQLSDF 1576
Query: 1075 IQEYST 1092
+QEY T
Sbjct: 1577 LQEYGT 1582
>ref|XP_855532.1| PREDICTED: similar to Complement C5 precursor [Canis familiaris].
Length = 473
Score = 103 bits (258), Expect = 3e-22
Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 4/238 (1%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 492
S A+ DI+L +G A DL L D+ ++ ++ + HV+L DS+P+ CV F
Sbjct: 212 SSHAVMDISLPTGVSANIEDLRALVEGVDQLLTDYQIKDGHVILQLDSIPSDEFLCVRFR 271
Query: 493 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 672
+ +G + PA+ +Y+Y+ P+ +C++FY +PS SK L +C C+C E C + +
Sbjct: 272 IFELFQVGFLSPATFTVYEYHRPDKQCTMFY-SPSGSK-LQKVCEGVTCKCVEADCGQMQ 329
Query: 673 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 852
L+ L R + AC P + YA++V + F + ++ V + + A
Sbjct: 330 AELD--LTISADARKETAC-KPDIAYAYKVHITSITKENVFIKYTATLLDV-YKAGEAAA 385
Query: 853 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPS 1017
F+ +A+C LE G+ YLIMG + H+ Y LDS+ WIE P+
Sbjct: 386 QKDSEITFIKKATCANAELEKGRHYLIMGKEALQIKHNFSFKYIYPLDSSTWIEYWPT 443
>ref|XP_533932.2| PREDICTED: similar to Complement C3 precursor [Canis familiaris].
Length = 1549
Score = 90.9 bits (224), Expect = 2e-18
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Frame = +1
Query: 322 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFE-----TEGPHVLLYFDSVPTSRE-CV 483
M+I DI++++GF + DL +L+S +RY+S +E + +V+LY + + ++E C+
Sbjct: 1401 MSILDISMMTGFSPDTCDLNQLSSGIERYISKYELNKAFSNKNNVILYLEKISHNQEDCI 1460
Query: 484 GFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCP 663
F Q +GL+QP S +Y YYN + C+ FY + LS LC D+C+CAE C
Sbjct: 1461 SFRVHQYFKVGLIQPGSVKVYSYYNLDESCTRFYHPEKEDGQLSKLCHKDMCRCAEENCF 1520
Query: 664 RQRRALERGLQDLDGYRMKFACYSPRVDYAFQ 759
Q + ++ +D R+ AC P VDY Q
Sbjct: 1521 MQ-QVYDKVTKD---ERLDKAC-EPGVDYGTQ 1547
>ref|XP_852711.1| PREDICTED: similar to C3 and PZP-like, alpha-2-macroglobulin domain
containing 8 [Canis familiaris].
Length = 1746
Score = 76.3 bits (186), Expect = 6e-14
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Frame = +1
Query: 256 EQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGP 435
+QE +V VC R G S MA+ ++ LLSGF + LE+L + +E G
Sbjct: 1537 QQEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRVDIESLEQLLFDKHFTLKRYEVAGR 1595
Query: 436 HVLLYFDSVPTS-RECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFL 612
VL YFD +P+ CV F A++E +G +YDYY P + + FY S+S
Sbjct: 1596 RVLFYFDEIPSRCLTCVRFRALREHVVGRTSALPVSVYDYYEPAFEATRFYNVSSRSPLA 1655
Query: 613 STLCSADVCQCAEGKCPRQ 669
LC+ C E + P Q
Sbjct: 1656 RELCAGPACNEVE-RAPAQ 1673
>ref|XP_534893.2| PREDICTED: similar to Alpha-2-macroglobulin precursor (Alpha-2-M)
[Canis familiaris].
Length = 2036
Score = 53.5 bits (127), Expect = 4e-07
Identities = 30/93 (32%), Positives = 46/93 (49%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 495
S M I D+ ++SGF + ++ L S +VS E HVL+Y D V + F
Sbjct: 1938 SNMVITDVKMVSGFIPLKPTVKMLERSS--HVSRTEVSNNHVLIYLDKVTNQTLSLSFMV 1995
Query: 496 VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 594
+Q+V + ++PA +YDYY + Y AP
Sbjct: 1996 LQDVPVRDLKPAIVKVYDYYETDEFAIAEYNAP 2028
>ref|XP_854216.1| PREDICTED: similar to Alpha-2-macroglobulin precursor (Alpha-2-M)
[Canis familiaris].
Length = 1699
Score = 52.0 bits (123), Expect = 1e-06
Identities = 31/96 (32%), Positives = 46/96 (47%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 495
S M + D+ +LSGF A +EKL + + V E + HVL Y ++V + F
Sbjct: 1603 SNMVLVDVKMLSGFTPVMASIEKLEN--NGQVMKTEVKNDHVLFYLETVFGTANHFTFSV 1660
Query: 496 VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 603
Q + +QPA ++YDYY + V Y S S
Sbjct: 1661 EQTNLVSNIQPAPVMVYDYYEKDEYALVSYNINSVS 1696
>ref|XP_542077.2| PREDICTED: similar to Complement C3 precursor [Canis familiaris].
Length = 1877
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +1
Query: 322 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 486
M+I +++LL+GFY + DL++LTS + Y +ET+ V+LY + + + V G
Sbjct: 1305 MSIIEVSLLTGFYPNQNDLKQLTSDVEMYAFQYETKTSSSDSTVVLYLEKLSHKEDTVLG 1364
Query: 487 FGAVQEVAIGLVQPASAVLYDYYNP 561
F + + +Q A +YDYY P
Sbjct: 1365 FRVHRMLQAEFLQAAQVTIYDYYEP 1389
>ref|XP_854220.1| PREDICTED: similar to pregnancy-zone protein [Canis familiaris].
Length = 1506
Score = 49.3 bits (116), Expect = 8e-06
Identities = 26/96 (27%), Positives = 45/96 (46%)
Frame = +1
Query: 268 RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 447
+ Q + I G+ S M I D+ ++SGF ++ + KL + E HVL+
Sbjct: 1381 KFQIHINISYTGERSSSNMVIVDVKMVSGFIPVKSSVRKLQEKPQ--IQRTEVSTNHVLI 1438
Query: 448 YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYY 555
YF+ + F Q++ + ++PA+ YDYY
Sbjct: 1439 YFEELTNQTLSFSFSVEQDIQVDNLKPATVKAYDYY 1474
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,547,458
Number of extensions: 1632277
Number of successful extensions: 7891
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7794
Number of HSP's successfully gapped: 8
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0001_D02
(1238 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_875097.2| PREDICTED: similar to complement component 4A [... 617 e-177
Alignment gi|NP_001159957.1| complement C4 [Bos taurus]. 617 e-177
Alignment gi|NP_001035559.2| complement C3 preproprotein [Bos taurus]. 124 2e-28
Alignment gi|NP_001160088.1| complement C5a anaphylatoxin [Bos taurus]. 110 2e-24
Alignment gi|XP_002688886.1| PREDICTED: hemolytic complement-like [Bos ta... 96 7e-20
Alignment gi|XP_606449.5| PREDICTED: hemolytic complement-like [Bos tauru... 96 7e-20
Alignment gi|XP_002688595.1| PREDICTED: C3 and PZP-like, alpha-2-macroglo... 77 2e-14
Alignment gi|XP_609516.3| PREDICTED: C3 and PZP-like, alpha-2-macroglobul... 77 2e-14
Alignment gi|XP_002687891.1| PREDICTED: pregnancy-zone protein-like [Bos ... 54 2e-07
Alignment gi|XP_583329.4| PREDICTED: Alpha-2-macroglobulin-like, partial ... 54 2e-07
>ref|XP_875097.2| PREDICTED: similar to complement component 4A [Bos taurus].
Length = 1742
Score = 617 bits (1592), Expect = e-177
Identities = 301/364 (82%), Positives = 319/364 (87%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLK+LR+YNV+D+ NTTCQDLQIEVTV GHVEY +EA L A DDP AHS
Sbjct: 1374 GTLKVLRSYNVMDMTNTTCQDLQIEVTVMGHVEYTMEAEEDYQDYEYEDLLAGDDPEAHS 1433
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
+PVTPLQLFD EAPK AEE+ESRVQYTVCIWR G+VGLSGMAIADITLLSGF+
Sbjct: 1434 RPVTPLQLFDGRRNRRRREAPKAAEERESRVQYTVCIWRTGKVGLSGMAIADITLLSGFH 1493
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRYVSHFETEGPH+LLYFDSVPTSRECVGFGAVQEV +GLVQPASA+
Sbjct: 1494 ALRADLEKLTSLSDRYVSHFETEGPHILLYFDSVPTSRECVGFGAVQEVPVGLVQPASAI 1553
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYYNPEHKCSVFYGAP KSK LSTLCSADVCQCAEGKCPRQRRALERG QDL+GYRMK
Sbjct: 1554 LYDYYNPEHKCSVFYGAPRKSKLLSTLCSADVCQCAEGKCPRQRRALERGQQDLEGYRMK 1613
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACYSPRVDY FQVKVLREDSRAAFRLFET ITQVLHFTKD +A A Q RNFLVRASCRL
Sbjct: 1614 FACYSPRVDYGFQVKVLREDSRAAFRLFETRITQVLHFTKDARATADQTRNFLVRASCRL 1673
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEPGKEYLIMGLDG T+DLKGDPQYLLDSN WIEEMPSER+C+STRHR PCAQL F+Q
Sbjct: 1674 QLEPGKEYLIMGLDGATYDLKGDPQYLLDSNSWIEEMPSERMCQSTRHRTPCAQLNSFLQ 1733
Query: 1081 EYST 1092
EY T
Sbjct: 1734 EYGT 1737
>ref|NP_001159957.1| complement C4 [Bos taurus].
Length = 1741
Score = 617 bits (1590), Expect = e-177
Identities = 301/364 (82%), Positives = 319/364 (87%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLK+LR+YNV+D+ NTTCQDLQIEVTV GHVEY +EA L A DDP AHS
Sbjct: 1373 GTLKVLRSYNVMDMTNTTCQDLQIEVTVMGHVEYTMEAEEDYEDYEYEDLLAGDDPEAHS 1432
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
+PVTPLQLFD EAPK AEE+ESRVQYTVCIWR G+VGLSGMAIADITLLSGF+
Sbjct: 1433 RPVTPLQLFDGRRNRRRREAPKAAEERESRVQYTVCIWRTGKVGLSGMAIADITLLSGFH 1492
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
A RADLEKLTSLSDRY+SHFETEGPHVLLYFDSVPTSRECVGFGAVQEV +GLVQPASA+
Sbjct: 1493 ALRADLEKLTSLSDRYMSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVPVGLVQPASAI 1552
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LYDYYNPEHKCSVFYGAP KSK LSTLCSADVCQCAEGKCPRQRRALERG QDL+GYRMK
Sbjct: 1553 LYDYYNPEHKCSVFYGAPRKSKLLSTLCSADVCQCAEGKCPRQRRALERGQQDLEGYRMK 1612
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACYSPRVDY FQVKVLREDSRAAFRLFET ITQVLHFTKD +A A Q RNFLVRASCRL
Sbjct: 1613 FACYSPRVDYGFQVKVLREDSRAAFRLFETRITQVLHFTKDARATADQTRNFLVRASCRL 1672
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
LEPGKEYLIMGLDG T+DLKGDPQYLLDSN WIEEMPSER+C+STRHR PCAQL F+Q
Sbjct: 1673 QLEPGKEYLIMGLDGATYDLKGDPQYLLDSNSWIEEMPSERMCQSTRHRTPCAQLNSFLQ 1732
Query: 1081 EYST 1092
EY T
Sbjct: 1733 EYGT 1736
>ref|NP_001035559.2| complement C3 preproprotein [Bos taurus].
Length = 1661
Score = 124 bits (311), Expect = 2e-28
Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 7/260 (2%)
Frame = +1
Query: 322 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPH----VLLYFDSVP-TSRECVG 486
M+I DI++++GF + DL+ L++ DRY+S +E +++Y D V T +C+
Sbjct: 1399 MSILDISMMTGFSPDVEDLKTLSTGVDRYISKYEMNRDSNKNTLIIYLDKVSHTVEDCLS 1458
Query: 487 FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 666
F Q +GL+QP + +Y YYN + C FY + LS LC D C+CAE C
Sbjct: 1459 FKVHQYFNVGLIQPGAVKVYSYYNLDETCIRFYHPDKEDGMLSKLCHKDTCRCAEENCFM 1518
Query: 667 QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDV 846
E L+D R+ AC P VDY ++ +++++ F + I ++ D
Sbjct: 1519 HHTEKEVTLED----RLDKAC-EPGVDYVYKTRLIQKKLEDDFDEYIMVIENIIKSGSD- 1572
Query: 847 KAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSE 1020
+ Q R F+ CR L L+ G YL+ G+ K Y++ + W+E P
Sbjct: 1573 EVQVKQERKFISHIKCREALKLKEGAHYLVWGVSSDLWGEKPKISYIIGKDTWVELWPEA 1632
Query: 1021 RLCRSTRHREPCAQLRDFIQ 1080
C+ +++ C L +F +
Sbjct: 1633 EECQDEENQKQCEDLANFTE 1652
>ref|NP_001160088.1| complement C5a anaphylatoxin [Bos taurus].
Length = 1677
Score = 110 bits (276), Expect = 2e-24
Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 492
S A+ DI+L +G A DL+ L D+ ++ +E + HV+L +S+P++ CV F
Sbjct: 1417 SSHAVMDISLPTGVNANPEDLKALVEQVDQLLTDYEIKDGHVILQLNSIPSNEFLCVRFR 1476
Query: 493 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 672
++ +G + PA+ +Y+Y+ P+ +C++FY + L +C C+C E C + +
Sbjct: 1477 IIELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNTK--LQKVCEGVTCKCIEADCGQMQ 1534
Query: 673 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 852
L+ L R + AC P + YA++V+++ AF + ++ L K +A
Sbjct: 1535 AELD--LTISAATRKETAC-KPEIAYAYKVEIVAVTEENAFVKYTATL---LDIYKAGEA 1588
Query: 853 AAAQAR--NFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPS 1017
AA + F+ + SC +LE K+YLIMG + H+ + Y LDS+ WIE P+
Sbjct: 1589 AAERDAEITFIKKTSCSNANLEKRKQYLIMGKEALQIKHNFRFKYVYPLDSSTWIEYWPT 1648
Query: 1018 ERLCRS 1035
+ C S
Sbjct: 1649 DSRCPS 1654
>ref|XP_002688886.1| PREDICTED: hemolytic complement-like [Bos taurus].
Length = 1618
Score = 95.9 bits (237), Expect = 7e-20
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 8/240 (3%)
Frame = +1
Query: 322 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 486
M I +I+LL+GFY + DL++LTS +RY +ET+ V+LY + + + V G
Sbjct: 1356 MTIMEISLLTGFYPNQDDLKQLTSEVERYAFQYETKMNSSDSTVVLYLEKLSHKEDTVLG 1415
Query: 487 FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 666
F + + +Q A +YDYY P +C+ FY P++ L +C DVC+CAE +CP
Sbjct: 1416 FRVHRMLKAEFLQAAQVTVYDYYEPSRRCTSFYNLPTEHASLRKICDKDVCRCAEEQCPS 1475
Query: 667 QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLR-EDSRAAFRLFETSITQVLHFTKD 843
++ Q+ ++ A VD+ ++ + E S + ++ Q + +
Sbjct: 1476 PKKDSNHLSQE----ELQTAACEAGVDFVYKASLESVETSDSNPYIYYNMKLQAIIKSGT 1531
Query: 844 VKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPS 1017
A + F+ +C+ L L+ + YLIMG +K + ++L ++ P+
Sbjct: 1532 DSAKPLAVKKFVTHTTCQDSLGLQEHETYLIMGQISDLWRVKSEYIHVLGKETFLMHWPA 1591
>ref|XP_606449.5| PREDICTED: hemolytic complement-like [Bos taurus].
Length = 1618
Score = 95.9 bits (237), Expect = 7e-20
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 8/240 (3%)
Frame = +1
Query: 322 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 486
M I +I+LL+GFY + DL++LTS +RY +ET+ V+LY + + + V G
Sbjct: 1356 MTIMEISLLTGFYPNQDDLKQLTSEVERYAFQYETKMNSSDSTVVLYLEKLSHKEDTVLG 1415
Query: 487 FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 666
F + + +Q A +YDYY P +C+ FY P++ L +C DVC+CAE +CP
Sbjct: 1416 FRVHRMLKAEFLQAAQVTVYDYYEPSRRCTSFYNLPTEHASLRKICDKDVCRCAEEQCPS 1475
Query: 667 QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLR-EDSRAAFRLFETSITQVLHFTKD 843
++ Q+ ++ A VD+ ++ + E S + ++ Q + +
Sbjct: 1476 PKKDSNHLSQE----ELQTAACEAGVDFVYKASLESVETSDSNPYIYYNMKLQAIIKSGT 1531
Query: 844 VKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPS 1017
A + F+ +C+ L L+ + YLIMG +K + ++L ++ P+
Sbjct: 1532 DSAKPLAVKKFVTHTTCQDSLGLQEHETYLIMGQISDLWRVKSEYIHVLGKETFLMHWPA 1591
>ref|XP_002688595.1| PREDICTED: C3 and PZP-like, alpha-2-macroglobulin domain containing 8
[Bos taurus].
Length = 1839
Score = 77.4 bits (189), Expect = 2e-14
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Frame = +1
Query: 259 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 432
QE +V VC R G S MA+ ++ LLSGF A+ LE+L L D++V+ +E G
Sbjct: 1586 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRADVESLEQL--LLDKHVALKRYELAG 1642
Query: 433 PHVLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 609
VL YFD +P+ CV F A++E +G ++YDYY P + + FY ++S
Sbjct: 1643 RRVLFYFDEIPSRCLTCVQFRALREHVVGRTSALPILVYDYYEPAFEATRFYNVSARSPL 1702
Query: 610 LSTLCSADVCQCAEGKCPRQRRALERG 690
LC+ C E RAL +G
Sbjct: 1703 ARELCAGPACNEVE-------RALAQG 1722
>ref|XP_609516.3| PREDICTED: C3 and PZP-like, alpha-2-macroglobulin domain containing
8, partial [Bos taurus].
Length = 1863
Score = 77.4 bits (189), Expect = 2e-14
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Frame = +1
Query: 259 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 432
QE +V VC R G S MA+ ++ LLSGF A+ LE+L L D++V+ +E G
Sbjct: 1610 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRADVESLEQL--LLDKHVALKRYELAG 1666
Query: 433 PHVLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 609
VL YFD +P+ CV F A++E +G ++YDYY P + + FY ++S
Sbjct: 1667 RRVLFYFDEIPSRCLTCVQFRALREHVVGRTSALPILVYDYYEPAFEATRFYNVSARSPL 1726
Query: 610 LSTLCSADVCQCAEGKCPRQRRALERG 690
LC+ C E RAL +G
Sbjct: 1727 ARELCAGPACNEVE-------RALAQG 1746
>ref|XP_002687891.1| PREDICTED: pregnancy-zone protein-like [Bos taurus].
Length = 1424
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/113 (28%), Positives = 54/113 (47%)
Frame = +1
Query: 268 RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 447
+VQ V I G+ S M I D+ ++SGF ++ + KL ++ + E HVL+
Sbjct: 1308 KVQIHVNISYTGERPSSNMVIVDVKMVSGFIPVKSSVRKLQEMAQ--IQRTEVSTNHVLI 1365
Query: 448 YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 606
YF+ + F Q++A+ ++PA+ YDYY E Y P ++
Sbjct: 1366 YFEELTHHILSFFFSVEQDIAVKNLKPATIKAYDYYETEEFTIEEYSVPCSAE 1418
>ref|XP_583329.4| PREDICTED: Alpha-2-macroglobulin-like, partial [Bos taurus].
Length = 999
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/113 (28%), Positives = 54/113 (47%)
Frame = +1
Query: 268 RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 447
+VQ V I G+ S M I D+ ++SGF ++ + KL ++ + E HVL+
Sbjct: 883 KVQIHVNISYTGERPSSNMVIVDVKMVSGFIPVKSSVRKLQEMAQ--IQRTEVSTNHVLI 940
Query: 448 YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 606
YF+ + F Q++A+ ++PA+ YDYY E Y P ++
Sbjct: 941 YFEELTHHILSFFFSVEQDIAVKNLKPATIKAYDYYETEEFTIEEYSVPCSAE 993
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,568,965
Number of extensions: 1588287
Number of successful extensions: 7963
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7891
Number of HSP's successfully gapped: 12
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0001_D02
(1238 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116561.1| complement C4 [Sus scrofa]. 697 0.0
Alignment gi|NP_999174.1| complement C3 [Sus scrofa]. 130 2e-30
Alignment gi|NP_001001646.1| complement C5 [Sus scrofa]. 109 4e-24
Alignment gi|XP_003354119.1| PREDICTED: complement C3-like [Sus scrofa]. 100 1e-21
Alignment gi|XP_003123534.2| PREDICTED: c3 and PZP-like alpha-2-macroglob... 74 2e-13
Alignment gi|XP_001925210.2| PREDICTED: alpha-2-macroglobulin [Sus scrofa]. 54 2e-07
Alignment gi|XP_001925235.3| PREDICTED: LOW QUALITY PROTEIN: alpha-2-macr... 54 2e-07
Alignment gi|XP_003355629.1| PREDICTED: ovostatin homolog 2-like, partial... 50 2e-06
Alignment gi|XP_001927580.2| PREDICTED: CD109 antigen isoform 1 [Sus scro... 50 3e-06
>ref|NP_001116561.1| complement C4 [Sus scrofa].
Length = 1741
Score = 697 bits (1800), Expect = 0.0
Identities = 345/364 (94%), Positives = 346/364 (95%)
Frame = +1
Query: 1 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHS 180
GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEAN LPAQDDPGAHS
Sbjct: 1373 GTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANEDYEDYEYEDLPAQDDPGAHS 1432
Query: 181 QPVTPLQLFDXXXXXXXXEAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 360
QPVTPLQLFD EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY
Sbjct: 1433 QPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFY 1492
Query: 361 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 540
AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV
Sbjct: 1493 AERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAV 1552
Query: 541 LYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 720
LY+YYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK
Sbjct: 1553 LYEYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMK 1612
Query: 721 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 900
FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL
Sbjct: 1613 FACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCRL 1672
Query: 901 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1080
HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ
Sbjct: 1673 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1732
Query: 1081 EYST 1092
EYST
Sbjct: 1733 EYST 1736
>ref|NP_999174.1| complement C3 [Sus scrofa].
Length = 1661
Score = 130 bits (327), Expect = 2e-30
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 8/288 (2%)
Frame = +1
Query: 235 EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 414
E K +E +S + +C G + M+I DI++++GF + DL+ L++ DRY+S
Sbjct: 1370 EPVKKPQEAKSSMVLDICTRYLGNQDAT-MSILDISMMTGFSPDTEDLKLLSTGVDRYIS 1428
Query: 415 HFE-----TEGPHVLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 576
+E + +++Y D + T +C+ F Q +GL+QP S +Y YYN + C+
Sbjct: 1429 KYELNKALSNKNTLIIYLDKISHTLEDCISFKVHQYFNVGLIQPGSVKVYSYYNLDESCT 1488
Query: 577 VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 756
FY + L+ LC ++C+CAE C E L D R++ AC P VDY +
Sbjct: 1489 RFYHPEKEDGMLNKLCHKEMCRCAEENCFMHHDEEEVTLDD----RLERAC-EPGVDYVY 1543
Query: 757 QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 930
+ ++L+++ F + I Q++ D + Q R F+ CR L L+ G YL+
Sbjct: 1544 KTRLLKKELSDDFDDYIMVIEQIIKSGSD-EVQVGQERRFISHIKCREALKLKEGGHYLV 1602
Query: 931 MGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1074
G+ K + Y++ + W+E P +C+ +++ C L +F
Sbjct: 1603 WGVSSDLWGEKPNISYIIGKDTWVELWPDGDVCQDEENQKQCQDLANF 1650
>ref|NP_001001646.1| complement C5 [Sus scrofa].
Length = 1677
Score = 109 bits (272), Expect = 4e-24
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 4/244 (1%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 492
S A+ DI+L +G A DL L D+ ++ +E + HV+ +S+P++ CV F
Sbjct: 1417 SSHAVMDISLPTGVNANAEDLRALVEGVDQLLTDYEIKDGHVICQLNSIPSNNFLCVRFR 1476
Query: 493 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 672
V+ +G + PA+ +Y+Y+ P+ +C++FY + S++K L +C C+C E R +
Sbjct: 1477 IVELFQVGFLSPATFTVYEYHRPDKQCTMFY-SMSQTK-LQKVCEGVTCKCVE--ADRGQ 1532
Query: 673 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 852
E L R + AC P + Y ++VK++ +AF + S+ V + V
Sbjct: 1533 MQTEVDLTISVNTRKETAC-KPEIAYVYKVKIIAMTEESAFVKYTASLLDVYKAGEAVAE 1591
Query: 853 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPSER 1023
++ F+ + +C +LE GK+YLIMG + H+ Y LDS+ WIE P++
Sbjct: 1592 KGSEI-TFIKKTTCTNANLEKGKQYLIMGKEALQIKHNFNFKYIYPLDSSTWIEYWPTDT 1650
Query: 1024 LCRS 1035
C S
Sbjct: 1651 ACPS 1654
>ref|XP_003354119.1| PREDICTED: complement C3-like [Sus scrofa].
Length = 1525
Score = 100 bits (250), Expect = 1e-21
Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 9/242 (3%)
Frame = +1
Query: 322 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 486
M I +++LL+GFY + DL++LTS +RY +ET+ V+LY + + + V G
Sbjct: 1263 MTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLG 1322
Query: 487 FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 666
F + + +Q A +YDYY P +CS FY P++ L +C DVC+CAE +CP
Sbjct: 1323 FRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEEQCPS 1382
Query: 667 QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKV--LREDSRAAFRLFETSITQVLHFTK 840
++ Q+ ++ A VD+ ++ ++ + + + + + ++
Sbjct: 1383 PKKDSNHVRQE----ELQVAACEIGVDFVYKARLESVEASTSNPYIYYNMQLQAIIKSGT 1438
Query: 841 DVKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMP 1014
D + + F+ +C L LE + YLIMG +K + ++L ++ P
Sbjct: 1439 D-SVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWP 1497
Query: 1015 SE 1020
+E
Sbjct: 1498 AE 1499
>ref|XP_003123534.2| PREDICTED: c3 and PZP-like alpha-2-macroglobulin domain-containing
protein 8 [Sus scrofa].
Length = 1907
Score = 73.6 bits (179), Expect = 2e-13
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Frame = +1
Query: 259 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 432
QE +V VC R G S MA+ ++ LLSGF + LE+L L DR+ S +E G
Sbjct: 1586 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRVDVESLEQL--LLDRHFSLKRYEVAG 1642
Query: 433 PHVLLYFDSVPTS-RECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 609
VL YFD +P+ C+ F A++E +G +YDYY P + + FY + S
Sbjct: 1643 RRVLFYFDEIPSQCLTCIRFRALREHVVGRTSALPISVYDYYEPAFEATRFYNVSAHSPL 1702
Query: 610 LSTLCSADVCQCAEGKCPRQRRALERG 690
LC+ C E RAL +G
Sbjct: 1703 AWELCAGPACNEVE-------RALAQG 1722
>ref|XP_001925210.2| PREDICTED: alpha-2-macroglobulin [Sus scrofa].
Length = 1490
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/119 (26%), Positives = 55/119 (46%)
Frame = +1
Query: 250 AEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE 429
A + +VQ + I G+ S M I D+ ++SGF ++ ++KL + E
Sbjct: 1368 AVDAHRKVQIHINISYTGERPSSNMVIVDVKMVSGFIPVKSSVKKLQERPQ--IQRTEVN 1425
Query: 430 GPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 606
HVL+YF+ + + F Q++ + ++PA+ YDYY E Y P ++
Sbjct: 1426 VNHVLIYFEELTSEVLSFSFSVEQDIQVKNLKPATVKAYDYYETEEFAIEEYSVPCSAE 1484
>ref|XP_001925235.3| PREDICTED: LOW QUALITY PROTEIN: alpha-2-macroglobulin [Sus scrofa].
Length = 1476
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +1
Query: 241 PKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHF 420
P + + Q +V + G S MAI D+ ++SGF + + K+ SD VS
Sbjct: 1353 PTCEPKAHTSFQISVNVSYTGSRPASHMAIVDVKMVSGFIXLKPTV-KMLERSDN-VSRT 1410
Query: 421 ETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 594
E HVL+Y D V + F Q++ + ++PA +YDYY Y AP
Sbjct: 1411 EVSSNHVLIYLDKVTDQSLSMSFTVTQDIPVRDLKPAIVKVYDYYETAEFAIAEYNAP 1468
>ref|XP_003355629.1| PREDICTED: ovostatin homolog 2-like, partial [Sus scrofa].
Length = 427
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/114 (27%), Positives = 50/114 (43%)
Frame = +1
Query: 262 ESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHV 441
+S T+ + G S M + D+ +LSGF + +E+L S + V E + HV
Sbjct: 313 QSHFDLTITLQYTGIHNNSNMVLVDVKMLSGFTPVMSSIEELES--NGQVMKSEVKNDHV 370
Query: 442 LLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 603
L + ++V F Q + +QPA ++YDYY + Y S S
Sbjct: 371 LFFLENVWGIANSFSFSVEQSNRVSNIQPAPVMVYDYYEKDEYALASYNINSVS 424
>ref|XP_001927580.2| PREDICTED: CD109 antigen isoform 1 [Sus scrofa].
Length = 1144
Score = 50.1 bits (118), Expect = 3e-06
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Frame = +1
Query: 316 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 495
SGMA+ ++ LLSGF L +L E + + LY DSV ++ CV A
Sbjct: 1006 SGMALMEVNLLSGFTVPSDSLPLSETLKK-----VEYDVGKLNLYLDSVNETQFCVDIPA 1060
Query: 496 VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVC--QCAEGKCPR 666
V+ + Q AS + DYY P + + Y + +K L S D+C A G C R
Sbjct: 1061 VRNFRVSNTQDASVSIVDYYEPRRRAARSYNSRAK------LSSCDLCGDMNACGGCDR 1113
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,064,783
Number of extensions: 1031890
Number of successful extensions: 4852
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4760
Number of HSP's successfully gapped: 9
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0001_D02
(1238 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 482 e-133
>Sscrofa_Chr07
|| Length = 134764511
Score = 482 bits (243), Expect = e-133
Identities = 246/247 (99%)
Strand = Plus / Minus
Query: 969 cccccagtacctgctggactcgaactgctggatcgaggagatgccctctgagcgcctgtg 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729329 cccccagtacctgctggactcgaactgctggatcgaggagatgccctctgagcgcctgtg 27729270
Query: 1029 ccggagcacccgccatcgggagccctgtgcccagctcagagacttcatccaggagtacag 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729269 ccggagcacccgccatcgggagccctgtgcccagctcagagacttcatccaggagtacag 27729210
Query: 1089 cacgcagggctgccaggtgtaagggctgctctgctgcctcctccaggaaaagtcacccct 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729209 cacgcagggctgccaggtgtaagggctgctctgctgcctcctccaggaaaagtcacccct 27729150
Query: 1149 ggatccttgcttggcccagtcccctgaacatagccctgggcaggagcaggcacccaataa 1208
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 27729149 ggatccttgcttggcccagtcccctgaacatagccccgggcaggagcaggcacccaataa 27729090
Query: 1209 aggcttt 1215
|||||||
Sbjct: 27729089 aggcttt 27729083
Score = 349 bits (176), Expect = 2e-93
Identities = 185/188 (98%)
Strand = Plus / Minus
Query: 107 tggaggcgaacgaggactacgaggactacgagtacgaggaccttcctgcccaggatgacc 166
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 27733236 tggaggcgaacgaggactacgaggaatacgagtacgaggaccttcctgcccaggatgacc 27733177
Query: 167 ctggggcccactcccagcccgtgacgcccctgcagctgtttgaccgccggaggaaccgcc 226
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 27733176 ctggggcccactcccagcccgtgacgcccctgcagctgtttgacggccggaggaaccgcc 27733117
Query: 227 gcaggagggaggcacccaaggtggccgaagagcaggaatccagggtgcagtacaccgtgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733116 gcaggagggaggcacccaaggtggccgaagagcaggaatccagggtgcagtacaccgtgt 27733057
Query: 287 gtatctgg 294
| ||||||
Sbjct: 27733056 gcatctgg 27733049
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 836 ctaaggatgtcaaggccgctgctgctcaggcccgaaacttcctggtgcgagcctcttgcc 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729607 ctaaggatgtcaaggccgctgctgctcaggcccgaaacttcctggtgcgagcctcttgcc 27729548
Query: 896 gccttcacttagaacctgggaaagaatatctgatcatgggcctggacgggaccacccacg 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729547 gccttcacttagaacctgggaaagaatatctgatcatgggcctggacgggaccacccacg 27729488
Query: 956 acctcaagggaga 968
|||||||||||||
Sbjct: 27729487 acctcaagggaga 27729475
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 459 ggtccctacctcccgggagtgtgtgggctttggagccgtgcaggaggtggccatcgggct 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730645 ggtccctacctcccgggagtgtgtgggctttggagccgtgcaggaggtggccatcgggct 27730586
Query: 519 ggtgcagccggccagcgccgtcctgtacgactactacaaccccg 562
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730585 ggtgcagccggccagcgccgtcctgtacgactactacaaccccg 27730542
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 652 ggcaagtgccctagacagcgccgggccctggagcgggggctgcaggacctggatggttac 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730234 ggcaagtgccctagacagcgccgggccctggagcgggggctgcaggacctggatggttac 27730175
Query: 712 aggatgaagtttgcctgctactcgccccgcgtggattacg 751
||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730174 aggatgaagtttgcctgctactcgccccgcgtggattacg 27730135
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 11 agatcctccgtgcctacaatgtcatagacctgaagaacaccacctgccaggaccttcaga 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733409 agatcctccgtgcctacaatgtcatagacctgaagaacaccacctgccaggaccttcaga 27733350
Query: 71 tcgaagtgacggtcaagggccacgtcgagtacatgt 106
||||||||||||||||||||||||||||||||||||
Sbjct: 27733349 tcgaagtgacggtcaagggccacgtcgagtacatgt 27733314
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 562 gagcacaaatgttctgtgttttacggggcgccaagtaagagcaaattcttgtccacattg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730407 gagcacaaatgttctgtgttttacggggcgccaagtaagagcaaattcttgtccacattg 27730348
Query: 622 tgctcggctgatgtctgccagtgcgccgaggg 653
||||||||||||||||||||||||||||||||
Sbjct: 27730347 tgctcggctgatgtctgccagtgcgccgaggg 27730316
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 293 ggcggaacggccaggtggggctgtcgggcatggccatcgcggacatcaccctcctgagtg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27732934 ggcggaacggccaggtggggctgtcgggcatggccatcgcggacatcaccctcctgagtg 27732875
Query: 353 gattctatgccgagcgggctgacctggagaag 384
||||||||||||||||||||||||||||||||
Sbjct: 27732874 gattctatgccgagcgggctgacctggagaag 27732843
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Minus
Query: 751 gccttccaggtgaaggttctccgagaagacagcagagctgctttccgcctctttgagacg 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729968 gccttccaggtgaaggttctccgagaagacagcagagctgctttccgcctctttgagacg 27729909
Query: 811 agcatcacccaagtcctacatttcactaag 840
||||||||||||||||||||||||| ||||
Sbjct: 27729908 agcatcacccaagtcctacatttcagtaag 27729879
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 383 agctgacctccctctctgaccggtacgtcagtcactttgagaccgaggggccccatgtcc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27732695 agctgacctccctctctgaccggtacgtcagtcactttgagaccgaggggccccatgtcc 27732636
Query: 443 tgctgtacttcgactcggt 461
|||||||||||||||||||
Sbjct: 27732635 tgctgtacttcgactcggt 27732617
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,014,298
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 10
Length of query: 1238
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1217
Effective length of database: 2,808,413,156
Effective search space: 3417838810852
Effective search space used: 3417838810852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)