Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0046_G02
(1469 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,105,083
Number of extensions: 1167949
Number of successful extensions: 2219
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2218
Number of HSP's successfully gapped: 0
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA SPL01_0046_G02
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0046_G02
(1469 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,788,210
Number of extensions: 1216669
Number of successful extensions: 3018
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3012
Number of HSP's successfully gapped: 0
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0046_G02
(1469 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,851,715
Number of extensions: 1524440
Number of successful extensions: 3592
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3590
Number of HSP's successfully gapped: 0
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0046_G02
(1469 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,565,076
Number of extensions: 1413861
Number of successful extensions: 3528
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 0
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0046_G02
(1469 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,437,309
Number of extensions: 1439129
Number of successful extensions: 3499
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3493
Number of HSP's successfully gapped: 0
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0046_G02
(1469 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 2565 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 2565 bits (1294), Expect = 0.0
Identities = 1321/1332 (99%), Gaps = 3/1332 (0%)
Strand = Plus / Plus
Query: 1 atttagaattgcctactccaactttactgttcatttttactgttcatctttatagtaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998479 atttagaattgcctactccaactttactgttcatttttactgttcatctttatagtaccc 50998538
Query: 61 aactttggaaaaataacttaacttaggctattttcccatcatcttgaatttaaccatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998539 aactttggaaaaataacttaacttaggctattttcccatcatcttgaatttaaccatcac 50998598
Query: 121 tgaaacttgatgttgaaaactcctgtaaataatccataaccgtgtgtaacattatcgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998599 tgaaacttgatgttgaaaactcctgtaaataatccataaccgtgtgtaacattatcgttt 50998658
Query: 181 ttaagtaaaattgaccagccaagtttctacagtctgcacaattttgtatcctttttatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998659 ttaagtaaaattgaccagccaagtttctacagtctgcacaattttgtatcctttttatga 50998718
Query: 241 caatgaaaaatgattatgaagaaatgctgaacaaat---atatttatgtgcaatacttta 297
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 50998719 caatgaaaaatgattatgaagaaatgctgaacaaattttatatttatgtgcaatacttta 50998778
Query: 298 tagacctatgtatcaaaagcatgtttacactggcattagtannnnnnnnaaattaatatc 357
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 50998779 tagacctatgtatcaaaagcatgtttacactggcattagtattttttttaaattaatatc 50998838
Query: 358 ccgaagcataagtgcgatagaaccagcagaccaaaacccttcagtttacaaagcagctgg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998839 ccgaagcataagtgcgatagaaccagcagaccaaaacccttcagtttacaaagcagctgg 50998898
Query: 418 aaaatttatgtcccaatttcaacaatcacactctatttgaaagatgagccaaactcacag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998899 aaaatttatgtcccaatttcaacaatcacactctatttgaaagatgagccaaactcacag 50998958
Query: 478 acactaaattttcggtcatgccttaacctggagtcgagccatttggccacagctgcacaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998959 acactaaattttcggtcatgccttaacctggagtcgagccatttggccacagctgcacaa 50999018
Query: 538 cttctttagaaaccaaatgaaaggcagatggacaaatacacgaaacggttcatattctgc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999019 cttctttagaaaccaaatgaaaggcagatggacaaatacacgaaacggttcatattctgc 50999078
Query: 598 ctgcttgtgaattcgatcctgtcatggtagcactgtcagggctgtgggggaccgaagact 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999079 ctgcttgtgaattcgatcctgtcatggtagcactgtcagggctgtgggggaccgaagact 50999138
Query: 658 ggcccccagcatgtgtggttgactggaggagaactgcaaacagttcagagagtttgaggg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999139 ggcccccagcatgtgtggttgactggaggagaactgcaaacagttcagagagtttgaggg 50999198
Query: 718 tcgcacccccctccccacgaaggcctgcagtgttaggtgtctggggacagtggttcacag 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999199 tcgcacccccctccccacgaaggcctgcagtgttaggtgtctggggacagtggttcacag 50999258
Query: 778 ggaggtggctgcctatctcaaggagataacctgagggctatttctccaattgtgtcatgt 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999259 ggaggtggctgcctatctcaaggagataacctgagggctatttctccaattgtgtcatgt 50999318
Query: 838 acactggtctctctctgccccagctcttgtcatcatgcctgacttttggccaagagagaa 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999319 acactggtctctctctgccccagctcttgtcatcatgcctgacttttggccaagagagaa 50999378
Query: 898 taagtcctcaagatttttggtcctaaaggatccttgttgcctttcaagctcacctctgtg 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999379 taagtcctcaagatttttggtcctaaaggatccttgttgcctttcaagctcacctctgtg 50999438
Query: 958 aagggactcagaactcttagagtcaggtcatacagacagttggaggcaactccagatgcc 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999439 aagggactcagaactcttagagtcaggtcatacagacagttggaggcaactccagatgcc 50999498
Query: 1018 aggagcaagactgggatcccgcacagagcaagggatgagggctttaaaggcacactgcag 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999499 aggagcaagactgggatcccgcacagagcaagggatgagggctttaaaggcacactgcag 50999558
Query: 1078 catcctcataggctcacccaaaaatggtccccctactagggggacaggcactgctaccta 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999559 catcctcataggctcacccaaaaatggtccccctactagggggacaggcactgctaccta 50999618
Query: 1138 cagacatttcacagaggggggtcaaggtgcacggtggccttctctgccactttggatgtg 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999619 cagacatttcacagaggggggtcaaggtgcacggtggccttctctgccactttggatgtg 50999678
Query: 1198 caaatggagaaaggggggccaactgaggtcaggagaaccctccaatcatcagttctggag 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999679 caaatggagaaaggggggccaactgaggtcaggagaaccctccaatcatcagttctggag 50999738
Query: 1258 tgtccctccacatggagaatattctaatcacgcactgagtgaatctgctcatataaagcc 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999739 tgtccctccacatggagaatattctaatcacgcactgagtgaatctgctcatataaagcc 50999798
Query: 1318 attccctttcaa 1329
||||||||||||
Sbjct: 50999799 attccctttcaa 50999810
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,433,791
Number of extensions: 304
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 2
Length of query: 1469
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1448
Effective length of database: 2,808,413,156
Effective search space: 4066582249888
Effective search space used: 4066582249888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)