BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598498.1| lanC-like protein 2 [Mus musculus]. 310 1e-84
Alignment gi|NP_001177913.1| lanC-like protein 1 [Mus musculus]. 238 9e-63
Alignment gi|NP_067270.1| lanC-like protein 1 [Mus musculus]. 238 9e-63
Alignment gi|NP_001177914.1| lanC-like protein 1 [Mus musculus]. 238 9e-63
Alignment gi|NP_775590.2| lanC-like protein 3 [Mus musculus]. 142 5e-34
>ref|NP_598498.1| lanC-like protein 2 [Mus musculus].
Length = 450
Score = 310 bits (795), Expect = 1e-84
Identities = 139/155 (89%), Positives = 151/155 (97%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH L+QAY+VFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGT+GNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGA+HFLSDIL PETARFPAFELG ++D
Sbjct: 416 SLFEGMAGAVHFLSDILVPETARFPAFELGFLQKD 450
>ref|NP_001177913.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 238 bits (607), Expect = 9e-63
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_067270.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 238 bits (607), Expect = 9e-63
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query
Animal-Genome cDNA SPL01_0057_B02
Animal-Genome cDNA SPL01_0057_B02
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095726.1| lanC-like protein 2 [Bos taurus]. 326 3e-89
Alignment gi|NP_001069695.1| lanC-like protein 1 [Bos taurus]. 245 8e-65
Alignment gi|NP_001193337.1| lanC-like protein 3 [Bos taurus]. 144 2e-34
>ref|NP_001095726.1| lanC-like protein 2 [Bos taurus].
Length = 433
Score = 326 bits (836), Expect = 3e-89
Identities = 150/161 (93%), Positives = 155/161 (96%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQA+KVFKEEKYL+DAVECSDVIW
Sbjct: 273 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLMQAHKVFKEEKYLKDAVECSDVIW 332
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLY +TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY
Sbjct: 333 QRGLLRKGYGICHGTAGNGYSFLSLYHITQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 392
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERDPKVQKD 484
SLFEGMAG IHFLSDILAPE +RFPAFEL SS+RD KVQKD
Sbjct: 393 SLFEGMAGTIHFLSDILAPEASRFPAFELSSSQRDTKVQKD 433
>ref|NP_001069695.1| lanC-like protein 1 [Bos taurus].
Length = 399
Score = 245 bits (625), Expect = 8e-65
Identities = 107/145 (73%), Positives = 123/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D L+HWCHGAPGVI+ L QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCVDDSRDLLIHWCHGAPGVIYMLTQAYKVFKEERYLNDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHGTAGN Y+FLSLY LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGTAGNAYAFLSLYSLTQDAKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_001193337.1| lanC-like protein 3 [Bos taurus].
Length = 420
Score = 144 bits (362), Expect = 2e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,984,499
Number of extensions: 1637028
Number of successful extensions: 5864
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5847
Number of HSP's successfully gapped: 3
Length of query: 470
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 364
Effective length of database: 14,174,046
Effective search space: 5159352744
Effective search space used: 5159352744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA SPL01_0057_B02
Animal-Genome cDNA SPL01_0057_B02
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061167.1| lanC-like protein 2 [Homo sapiens]. 315 5e-86
Alignment gi|NP_006046.1| lanC-like protein 1 [Homo sapiens]. 244 1e-64
Alignment gi|NP_001130047.1| lanC-like protein 1 [Homo sapiens]. 244 1e-64
Alignment gi|NP_001130046.1| lanC-like protein 1 [Homo sapiens]. 244 1e-64
Alignment gi|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens]. 142 6e-34
Alignment gi|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens]. 108 9e-24
>ref|NP_061167.1| lanC-like protein 2 [Homo sapiens].
Length = 450
Score = 315 bits (808), Expect = 5e-86
Identities = 143/155 (92%), Positives = 152/155 (98%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGAIHFLSD+L PET+RFPAFEL SS+RD
Sbjct: 416 SLFEGMAGAIHFLSDVLGPETSRFPAFELDSSKRD 450
>ref|NP_006046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 244 bits (623), Expect = 1e-64
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_001130047.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 244 bits (623), Expect = 1e-64
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_001130046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 244 bits (623), Expect = 1e-64
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens].
Length = 420
Score = 142 bits (359), Expect = 6e-34
Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
>ref|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens].
Length = 388
Score = 108 bits (271), Expect = 9e-24
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 295
KG GICHG AG+ Y FL LYRLT + KY+YRA
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,064,298
Number of extensions: 1628774
Number of successful extensions: 5466
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5439
Number of HSP's successfully gapped: 6
Length of query: 470
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 364
Effective length of database: 14,802,980
Effective search space: 5388284720
Effective search space used: 5388284720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361509.1| PREDICTED: lanC-like protein 2-like, partial... 327 1e-89
Alignment gi|XP_001926406.3| PREDICTED: lanC-like protein 1 [Sus scrofa]. 238 5e-63
Alignment gi|XP_003360315.1| PREDICTED: lanC-like protein 3-like [Sus scr... 144 2e-34
Alignment gi|XP_003359681.1| PREDICTED: lanC-like protein 1-like [Sus scr... 104 1e-22
>ref|XP_003361509.1| PREDICTED: lanC-like protein 2-like, partial [Sus scrofa].
Length = 626
Score = 327 bits (837), Expect = 1e-89
Identities = 152/154 (98%), Positives = 153/154 (99%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW
Sbjct: 434 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 493
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY
Sbjct: 494 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 553
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSER 463
SLFEG +GAIHFLSDILAPETARFPAFELGSSER
Sbjct: 554 SLFEGESGAIHFLSDILAPETARFPAFELGSSER 587
Score = 66.2 bits (160), Expect = 4e-11
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = +3
Query: 702 VGCSQRKPFSVHEPELAVHEGTQQPLLRTQ 791
VGCSQRKPFSVHEPELAVHEGTQQPLLRTQ
Sbjct: 597 VGCSQRKPFSVHEPELAVHEGTQQPLLRTQ 626
>ref|XP_001926406.3| PREDICTED: lanC-like protein 1 [Sus scrofa].
Length = 432
Score = 238 bits (608), Expect = 5e-63
Identities = 102/145 (70%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHG+PGVI+ L+QAYKVF+EE+YL DA +C+DVIW+ GL
Sbjct: 288 KFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGL 347
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHGTAGN Y+FL+L+ LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 348 LKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 407
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 408 GMAGTIYFLADLLVPTKAKFPAFEL 432
>ref|XP_003360315.1| PREDICTED: lanC-like protein 3-like [Sus scrofa].
Length = 242
Score = 144 bits (362), Expect = 2e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 97 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 156
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG G: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_001177914.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 238 bits (607), Expect = 9e-63
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_775590.2| lanC-like protein 3 [Mus musculus].
Length = 420
Score = 142 bits (359), Expect = 5e-34
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY + K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,171,549
Number of extensions: 1365090
Number of successful extensions: 4759
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4712
Number of HSP's successfully gapped: 5
Length of query: 470
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 365
Effective length of database: 12,463,779
Effective search space: 4549279335
Effective search space used: 4549279335
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
ICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 157 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 216
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 217 FSGTVCFLIDLLQPNQAEFPLFSV 240
>ref|XP_003359681.1| PREDICTED: lanC-like protein 1-like [Sus scrofa].
Length = 58
Score = 104 bits (260), Expect = 1e-22
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +2
Query: 278 KYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHFLSDILAPETARFPAFEL 448
KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+FL+D+L P A+FPAFEL
Sbjct: 2 KYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 58
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,941,482
Number of extensions: 1081580
Number of successful extensions: 3722
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3705
Number of HSP's successfully gapped: 5
Length of query: 470
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 367
Effective length of database: 8,779,541
Effective search space: 3222091547
Effective search space used: 3222091547
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 318 6e-87
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 236 3e-62
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 144 3e-34
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
adriamycin sensitivity protein) [Canis familiaris].
Length = 452
Score = 318 bits (816), Expect = 6e-87
Identities = 146/158 (92%), Positives = 152/158 (96%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL+DA+ECSDVIW
Sbjct: 295 VRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIW 354
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLY LTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY
Sbjct: 355 QRGLLRKGYGICHGTAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 414
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERDPKV 475
SLFEGMAGAIHFLSDILAPET+RFPAFEL +RD K+
Sbjct: 415 SLFEGMAGAIHFLSDILAPETSRFPAFELAPPQRDRKI 452
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris].
Length = 399
Score = 236 bits (603), Expect = 3e-62
Identities = 103/145 (71%), Positives = 121/145 (83%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHG+PGVI+ L+QAYK F+ E YL DA +C+DVIW+ GL
Sbjct: 255 KFPSGNYPPCVDDNRDLLVHWCHGSPGVIYMLIQAYKAFRGEHYLNDAHQCADVIWRYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
LRKGYG+CHGTAGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 315 LRKGYGLCHGTAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like
3 [Canis familiaris].
Length = 420
Score = 144 bits (362), Expect = 3e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,117,941
Number of extensions: 1661769
Number of successful extensions: 5797
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5786
Number of HSP's successfully gapped: 3
Length of query: 470
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 364
Effective length of database: 15,340,888
Effective search space: 5584083232
Effective search space used: 5584083232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0057_B02
(1410 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894522.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 989 0.0
>gb|GL894522.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3179
Length = 75245
Score = 989 bits (499), Expect = 0.0
Identities = 499/499 (100%)
Strand = Plus / Minus
Query: 496 ccgacgggaccacaggccgccaggttgcctggcgcctgacacagaagccaccgtgcatcc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27850 ccgacgggaccacaggccgccaggttgcctggcgcctgacacagaagccaccgtgcatcc 27791
Query: 556 tgaggaagggaggacggagggagcagagccccgcagacccccgccccgccagcctgctgt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27790 tgaggaagggaggacggagggagcagagccccgcagacccccgccccgccagcctgctgt 27731
Query: 616 gctcccctcgctggtgtcagcgtgacgtctccgtgtccagtgctgcgtaatgtttgcatg 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730 gctcccctcgctggtgtcagcgtgacgtctccgtgtccagtgctgcgtaatgtttgcatg 27671
Query: 676 tccctcggtgtttgctctccgtaggcgtaggttgttctcagcggaagcccttctctgtcc 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27670 tccctcggtgtttgctctccgtaggcgtaggttgttctcagcggaagcccttctctgtcc 27611
Query: 736 atgagcccgagctggccgtgcatgagggcacacagcagccccttctccgtacccaataaa 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27610 atgagcccgagctggccgtgcatgagggcacacagcagccccttctccgtacccaataaa 27551
Query: 796 gcggggtgcttctgtattggcagacaggacacaggcaggtggtgtctctcttatgtacca 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27550 gcggggtgcttctgtattggcagacaggacacaggcaggtggtgtctctcttatgtacca 27491
Query: 856 gaaagactctcttttaagatgccatcccagtgtgagacttttcccagcatttcctgtggg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27490 gaaagactctcttttaagatgccatcccagtgtgagacttttcccagcatttcctgtggg 27431
Query: 916 acccttttgggggagcttgagagaaagactgctccagaaatgaaaagaaatagcggaggt 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27430 acccttttgggggagcttgagagaaagactgctccagaaatgaaaagaaatagcggaggt 27371
Query: 976 agaggggctttcgctggag 994
|||||||||||||||||||
Sbjct: 27370 agaggggctttcgctggag 27352
Score = 355 bits (179), Expect = 4e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 123 aggtgtttaaggaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34373 aggtgtttaaggaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggc 34314
Query: 183 agcggggcctgctgcgcaagggctacggcatctgccacgggactgcgggcaacggctact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34313 agcggggcctgctgcgcaagggctacggcatctgccacgggactgcgggcaacggctact 34254
Query: 243 ccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaag 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34253 ccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaag 34195
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 1022 ggaccagcccctctgtgggtcttatgctcaccttcgtggttttaggaagcccgagggggc 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27251 ggaccagcccctctgtgggtcttatgctcaccttcgtggttttaggaagcccgagggggc 27192
Query: 1082 gcgtggcagctctgccgggctcccactcgcaggctcttagtgtgaagttccagacccttg 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27191 gcgtggcagctctgccgggctcccactcgcaggctcttagtgtgaagttccagacccttg 27132
Query: 1142 aaatccagggcagtccgtgccctggggagggg 1173
||||||||||||||||||||||||||||||||
Sbjct: 27131 aaatccagggcagtccgtgccctggggagggg 27100
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 1200 gggggaagccttgtcatggccacatgcgaaccaagcagtagtgccgtgtttgttactaaa 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26999 gggggaagccttgtcatggccacatgcgaaccaagcagtagtgccgtgtttgttactaaa 26940
Query: 1260 cagactgcacctcagttttatcagcatcgtaacgtcttgttccaagttcagcagatacag 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26939 cagactgcacctcagttttatcagcatcgtaacgtcttgttccaagttcagcagatacag 26880
Query: 1320 ttccggatgggcagtaag 1337
||||||||||||||||||
Sbjct: 26879 ttccggatgggcagtaag 26862
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 1 catgcgccacaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35797 catgcgccacaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacaga 35738
Query: 61 ccgcctggtacactggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35737 ccgcctggtacactggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgta 35678
Query: 121 caaggt 126
||||||
Sbjct: 35677 caaggt 35672
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 381 ccggcgccattcacttcctctccgacatcctggcccccgagacagcacggtttccagcat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28035 ccggcgccattcacttcctctccgacatcctggcccccgagacagcacggtttccagcat 27976
Query: 441 ttgaactcggctcttcagagaggga 465
|||||||||||||||||||||||||
Sbjct: 27975 ttgaactcggctcttcagagaggga 27951
Score = 155 bits (78), Expect = 8e-35
Identities = 81/82 (98%)
Strand = Plus / Minus
Query: 294 cttgcaagtttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgaca 353
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32067 cttgctagtttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgaca 32008
Query: 354 ggccctactctctcttcgaagg 375
||||||||||||||||||||||
Sbjct: 32007 ggccctactctctcttcgaagg 31986
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 1340 gaaagacattcagctgttcccatgtccctccaattaaacttatttc 1385
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26761 gaaagacattcagctgttcccatgtccctccaattaaacttatttc 26716
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,311,873
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 8
Length of query: 1410
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1389
Effective length of database: 2,808,413,156
Effective search space: 3900885873684
Effective search space used: 3900885873684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)