Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0104_H12
(2076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent ... 419 e-117
Alignment gi|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent ... 419 e-117
Alignment gi|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa]. 182 5e-46
Alignment gi|NP_001090991.1| cytochrome b561 [Sus scrofa]. 132 1e-30
>ref|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2
[Sus scrofa].
Length = 242
Score = 419 bits (1077), Expect = e-117
Identities = 206/235 (87%), Positives = 207/235 (88%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWH+GFA DGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFN HNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
FSLKNGTTSYSNLPDEAVFANSAGM YILQASSWKRPEPGLQAERQ
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQ 235
>ref|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 1
[Sus scrofa].
Length = 242
Score = 419 bits (1077), Expect = e-117
Identities = 206/235 (87%), Positives = 207/235 (88%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWH+GFA DGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFN HNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
FSLKNGTTSYSNLPDEAVFANSAGM YILQASSWKRPEPGLQAERQ
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQ 235
>ref|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa].
Length = 285
Score = 182 bits (463), Expect = 5e-46
Identities = 95/224 (42%), Positives = 130/224 (58%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ ++ EG DGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L AVF+ HN KIPN+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNARKIPNMYSLHSWVGLA 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYMLQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFAL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
+ + +YS LP E VF N+ G+ +I+ WKRP+
Sbjct: 187 Q--SPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 228
>ref|NP_001090991.1| cytochrome b561 [Sus scrofa].
Length = 252
Score = 132 bits (331), Expect = 1e-30
Identities = 83/220 (37%), Positives = 108/220 (49%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 24 LGLTVVAVTGAWLGAYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H++AF++ ++GL AVF+ H + I +LYSLHSW GI LF QW +G
Sbjct: 81 KRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVG 140
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
FL P AS LRS +P HVFF E L F L T YS
Sbjct: 141 LGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQL---GTKYSAFES 197
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
E V AN G+ YIL + WKRP LQAE Q
Sbjct: 198 EGVLANVLGLLLVAFGAVVLYILTRADWKRP---LQAEEQ 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 56,303,676
Number of extensions: 1772428
Number of successful extensions: 7575
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7548
Number of HSP's successfully gapped: 4
Length of query: 692
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 586
Effective length of database: 8,704,850
Effective search space: 5101042100
Effective search space used: 5101042100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0104_H12
(2076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 i... 339 5e-93
Alignment gi|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 i... 330 3e-90
Alignment gi|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isof... 330 3e-90
Alignment gi|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapien... 170 4e-42
Alignment gi|NP_001017916.1| cytochrome b561 [Homo sapiens]. 124 3e-28
Alignment gi|NP_001017917.1| cytochrome b561 [Homo sapiens]. 124 3e-28
Alignment gi|NP_001906.3| cytochrome b561 [Homo sapiens]. 124 3e-28
Alignment gi|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sap... 56 1e-07
Alignment gi|NP_872386.1| cytochrome b561 domain-containing protein 1 iso... 50 8e-06
>ref|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo sapiens].
Length = 259
Score = 339 bits (870), Expect = 5e-93
Identities = 167/240 (69%), Positives = 179/240 (74%)
Frame = +1
Query: 415 ECLIRMAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGM 594
EC+IRM G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GM
Sbjct: 13 ECVIRMVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGM 72
Query: 595 VVLYSAASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYS 774
VV Y ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF HNH + NLYS
Sbjct: 73 VVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYS 132
Query: 775 LHSWLGITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXX 954
LHSWLGITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF
Sbjct: 133 LHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGI 192
Query: 955 NEKLFFSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
NEKLFFSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ
Sbjct: 193 NEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQ 252
>ref|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 330 bits (846), Expect = 3e-90
Identities = 163/235 (69%), Positives = 174/235 (74%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF HNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
FSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ
Sbjct: 181 FSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQ 235
>ref|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 330 bits (846), Expect = 3e-90
Identities = 163/235 (69%), Positives = 174/235 (74%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF HNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
FSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ
Sbjct: 181 FSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQ 235
>ref|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapiens].
Length = 286
Score = 170 bits (431), Expect = 4e-42
Identities = 87/224 (38%), Positives = 124/224 (55%), Gaps = 1/224 (0%)
Frame = +1
Query: 442 WFYLSAL-ALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
W +L+ L + +G + ++ + W+ ++ EG DG+ L FNWHPVLMVTG V + A
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ + AVF +HN I N+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLI 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V + Q GF VFLLPWA + LR+ L PIHV+ EKL FSL
Sbjct: 127 AVICYLLQLLSGFSVFLLPWAPLSLRAFLMPIHVYSGIVIFGTVIATALMGLTEKLIFSL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
++ +YS P E VF N+ G+ +I+ WKRP+
Sbjct: 187 RD--PAYSTFPPEGVFVNTLGLLILVFGALIFWIVTRPQWKRPK 228
>ref|NP_001017916.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 124 bits (311), Expect = 3e-28
Identities = 78/220 (35%), Positives = 105/220 (47%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ A ++ ++GL AVF+ H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
E V AN G+ YIL + WKRP QAE Q
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQ 233
>ref|NP_001017917.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 124 bits (311), Expect = 3e-28
Identities = 78/220 (35%), Positives = 105/220 (47%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ A ++ ++GL AVF+ H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
E V AN G+ YIL + WKRP QAE Q
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQ 233
>ref|NP_001906.3| cytochrome b561 [Homo sapiens].
Length = 251
Score = 124 bits (311), Expect = 3e-28
Identities = 78/220 (35%), Positives = 105/220 (47%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ A ++ ++GL AVF+ H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
E V AN G+ YIL + WKRP QAE Q
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQ 233
>ref|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sapiens].
Length = 157
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 442 WFYLSAL-ALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
W +L+ L + +G + ++ + W+ ++ EG DG+ L FNWHPVLMVTG V + AS
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAS 66
Query: 619 LAYRLPQSWVGPKLPWKLGHA 681
+ + +G + HA
Sbjct: 67 FRFFSLSASMGSAFSPSISHA 87
>ref|NP_872386.1| cytochrome b561 domain-containing protein 1 isoform 2 [Homo
sapiens].
Length = 229
Score = 50.1 bits (118), Expect = 8e-06
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Frame = +1
Query: 544 GTILTFNWHPVLMVTGMVVLYSAASLAYRLPQS---WVGPKLPWKLGHAAMHLMAFILTV 714
GT L F+WHPV M + + A L + S + K +L H A +A +
Sbjct: 48 GTSL-FSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRL-HWAGQTLAILCAA 105
Query: 715 LGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPI 894
LGL + +S ++P+L S HSW+G T+ A Q G + A V + LK
Sbjct: 106 LGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLY 165
Query: 895 HV 900
H+
Sbjct: 166 HL 167
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 87,939,823
Number of extensions: 2622294
Number of successful extensions: 11602
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 11563
Number of HSP's successfully gapped: 9
Length of query: 692
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 583
Effective length of database: 14,704,088
Effective search space: 8572483304
Effective search space used: 8572483304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0104_H12
(2076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [... 374 e-103
Alignment gi|NP_001192978.1| cytochrome b reductase 1 [Bos taurus]. 188 1e-47
Alignment gi|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bo... 188 1e-47
Alignment gi|NP_777262.1| cytochrome b561 [Bos taurus]. 132 2e-30
>ref|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [Bos taurus].
Length = 265
Score = 374 bits (959), Expect = e-103
Identities = 191/271 (70%), Positives = 201/271 (74%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLS LAL SLGSMCIL TIYWMRYWH GFA DG++L FNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSVLALCSLGSMCILFTIYWMRYWHGGFAWDGSMLMFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWL 789
AASL YRLPQSWVGP+LPWK GHAAMHL+AF+LTVLGL AVF HNH KIP+LYSLHSWL
Sbjct: 61 AASLVYRLPQSWVGPRLPWKSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFSVFLLPWASMWLRSLLKPIHVFFGASILSLAIASVVSGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQVRPPA 1149
FSLKNGT +YSNLP EAVFAN AGM YIL ASSWKRPEPG+QAER
Sbjct: 181 FSLKNGTKTYSNLPSEAVFANCAGMLVVVFGLLVLYILLASSWKRPEPGMQAER------ 234
Query: 1150 LGCASSALVSIQPLRT*GGADTHAVEGEGPR 1242
+P RT G A T V EG R
Sbjct: 235 -----------EPTRTRGRAGTPEVMLEGER 254
>ref|NP_001192978.1| cytochrome b reductase 1 [Bos taurus].
Length = 285
Score = 188 bits (478), Expect = 1e-47
Identities = 98/224 (43%), Positives = 132/224 (58%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ + EG DGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L AVF+ HN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTEKLIFAL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
KN SYS+LP E +F N+ G+ +I+ WKRP+
Sbjct: 187 KN--PSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPK 228
>ref|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bos taurus].
Length = 285
Score = 188 bits (478), Expect = 1e-47
Identities = 98/224 (43%), Positives = 132/224 (58%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ + EG DGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L AVF+ HN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTEKLIFAL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
KN SYS+LP E +F N+ G+ +I+ WKRP+
Sbjct: 187 KN--PSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPK 228
>ref|NP_777262.1| cytochrome b561 [Bos taurus].
Length = 273
Score = 132 bits (331), Expect = 2e-30
Identities = 83/220 (37%), Positives = 107/220 (48%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + + T W+ + G A + L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 45 LGLIVVAMTGAWLGMYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 101
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ AF++ ++GL AVF H + +LYSLHSW GI LF QW +G
Sbjct: 102 KRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVG 161
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P HVFF E L F L T YS
Sbjct: 162 FSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFEL---GTKYSMFEP 218
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
E V AN G+ YIL + WKRP LQAE Q
Sbjct: 219 EGVLANVLGLLLATFATVILYILTRADWKRP---LQAEEQ 255
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 86,474,587
Number of extensions: 2654105
Number of successful extensions: 12045
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 12000
Number of HSP's successfully gapped: 4
Length of query: 692
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 583
Effective length of database: 14,074,782
Effective search space: 8205597906
Effective search space used: 8205597906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0104_H12
(2076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate d... 330 3e-90
Alignment gi|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 ... 176 1e-43
Alignment gi|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochro... 128 2e-29
>ref|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein
[Canis familiaris].
Length = 242
Score = 330 bits (846), Expect = 3e-90
Identities = 161/235 (68%), Positives = 174/235 (74%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLS +L+ LG MCI+ TIYW++ WH GFA DGT+L FN+HPV MV G VVLYS
Sbjct: 1 MAVGWFYLSFYSLWFLGLMCIILTIYWVQLWHGGFAWDGTLLMFNYHPVFMVVGSVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWL 789
AASL YRLPQSWVGPKLPWK+GHA +HL+AFILTVLGL AVF H +I NLYSLHSWL
Sbjct: 61 AASLLYRLPQSWVGPKLPWKIGHAMLHLLAFILTVLGLVAVFQLHRRSRITNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GI TVFLFACQWFLGFVVFLLPW SV LRSLLKPIHVFF NEKLF
Sbjct: 121 GIVTVFLFACQWFLGFVVFLLPWMSVWLRSLLKPIHVFFGVVILSLSIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
FSL N T YSNLP EA+FANS GM YIL SSWKRPEPG+ E Q
Sbjct: 181 FSLNNATQPYSNLPSEAIFANSLGMLVVVFGLLVLYILLVSSWKRPEPGILTEGQ 235
>ref|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris].
Length = 280
Score = 176 bits (445), Expect = 1e-43
Identities = 86/212 (40%), Positives = 122/212 (57%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ ++ W+ ++ EG DGT L FNWHPV MVTG V + A + YRLP +W
Sbjct: 17 VGFLAVVFSLVWVLHYREGLGWDGTALEFNWHPVFMVTGFVFIQGIAIIVYRLPWTWKCS 76
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
KL K HA +H +A IL ++ L +VF+ HN IPN+YSLHSW+G+T V L+ Q LG
Sbjct: 77 KLLMKSIHAGLHTVAAILVIISLVSVFDYHNAGNIPNMYSLHSWVGLTVVILYILQLLLG 136
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
+VFLLPWA + LR+L+ P+HV+ EKL F G + YS+ P
Sbjct: 137 VLVFLLPWAPLSLRALVMPMHVYSGLLIFGTVIATVLMGVTEKLIF----GVSGYSSFPP 192
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
E VFAN+ G+ +I+ W+RP+
Sbjct: 193 EGVFANTLGLLNVVFGALIFWIVTRPQWQRPK 224
>ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis
familiaris].
Length = 252
Score = 128 bits (321), Expect = 2e-29
Identities = 81/220 (36%), Positives = 106/220 (48%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A +G L FN HP+ MV G++ L A L YR+ ++
Sbjct: 24 LGLTVVAMTGAWLGLYRGGIAWEGA-LQFNVHPLCMVIGLIFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H++A I+ ++GL AVF+ H + +LYSLHSW GI L+ QW +G
Sbjct: 81 KRTTKVLHGLLHVLALIIALVGLVAVFDYHRQKGYADLYSLHSWCGILVFVLYFMQWLVG 140
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P HVFF E L F L YS
Sbjct: 141 FSFFLFPGASFSLRSRYRPQHVFFGATIFVLSLGTALLGLKEALLFKL---GAKYSTFEA 197
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
E V AN G+ YIL + WKRP QAE Q
Sbjct: 198 EGVLANVLGLLLASFGVTVLYILTRADWKRPP---QAEEQ 234
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 89,697,585
Number of extensions: 2695017
Number of successful extensions: 12012
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11965
Number of HSP's successfully gapped: 3
Length of query: 692
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 582
Effective length of database: 15,207,544
Effective search space: 8850790608
Effective search space used: 8850790608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0104_H12
(2076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus... 326 5e-89
Alignment gi|NP_082869.2| cytochrome b reductase 1 [Mus musculus]. 170 5e-42
Alignment gi|NP_031831.2| cytochrome b561 [Mus musculus]. 128 2e-29
>ref|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus musculus].
Length = 242
Score = 326 bits (835), Expect = 5e-89
Identities = 157/235 (66%), Positives = 173/235 (73%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MA GWFYLS + L SLGSMCIL T YWM+YW GFA DGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWL 789
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL AVF HNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTV LFACQWFLGF VFLLPWAS LRSLLKP+HVFF NEKLF
Sbjct: 121 GITTVVLFACQWFLGFAVFLLPWASQWLRSLLKPLHVFFGACILSLSITSVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
F LKN T YS+LP EAVFANS G+ Y+L ASSWKRP+PG +RQ
Sbjct: 181 FVLKNATKPYSSLPGEAVFANSTGLLVVAFGLLVLYVLLASSWKRPDPGALTDRQ 235
>ref|NP_082869.2| cytochrome b reductase 1 [Mus musculus].
Length = 290
Score = 170 bits (430), Expect = 5e-42
Identities = 93/258 (36%), Positives = 135/258 (52%), Gaps = 1/258 (0%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG +G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
KL K HA ++ +A IL ++ + AVF HN +K+P++YSLHSW+G+T + L+ Q +G
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQLVVG 138
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F VFLLPWA LR+++ PIHV+ EKLFF LK+ SY + P
Sbjct: 139 FFVFLLPWAPPSLRAIVMPIHVYSGLLLFGTVIATVLMGVTEKLFFVLKH--PSYHSFPP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRP-EPGLQAERQVRPPALGCASSALVSIQPL 1191
E VF N+ G+ +I+ WKRP EPG Q+ C ++I
Sbjct: 197 EGVFTNTLGLLILVFGALIFWIVTRPQWKRPREPG-SVPLQLNGGNAECRMEGAIAISSA 255
Query: 1192 RT*GGADTHAVEGEGPRA 1245
+ AD E A
Sbjct: 256 HSMDAADPADAESSSEGA 273
>ref|NP_031831.2| cytochrome b561 [Mus musculus].
Length = 250
Score = 128 bits (322), Expect = 2e-29
Identities = 81/220 (36%), Positives = 106/220 (48%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNSHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ AFI+ ++GL AVF+ H + +LYSLHSW GI L+ QW +G
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVG 138
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F L + YS
Sbjct: 139 FSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKL---GSKYSTFEP 195
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
E V AN G+ YIL + WKRP QAE Q
Sbjct: 196 EGVLANVLGLLLVCFGVVVLYILAQADWKRPS---QAEEQ 232
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 74,006,274
Number of extensions: 2160817
Number of successful extensions: 9646
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9609
Number of HSP's successfully gapped: 3
Length of query: 692
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 584
Effective length of database: 12,373,671
Effective search space: 7226223864
Effective search space used: 7226223864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPL01_0104_H12
(2076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1703 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1703 bits (859), Expect = 0.0
Identities = 902/916 (98%), Gaps = 4/916 (0%)
Strand = Plus / Plus
Query: 1132 caggtcaggccgcccgccctgggttgcgcttcttctgctctggtctccatccagcccctc 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703419 caggtcaggccgcccgccctgggttgcgcttcttctgctctggtctccatccagcccctc 9703478
Query: 1192 cggacgtgaggcggggcggacacgc----acgcggtggagggagaggggccaagggcaga 1247
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9703479 cagacgtgaggcggggcggacacgcgtgcacgcggtggagggagaggggccaagggcaga 9703538
Query: 1248 gctgctccgcagagaagctgagggccccctgctcccgctgcctcgtgtctacacacgtgc 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703539 gctgctccgcagagaagctgagggccccctgctcccgctgcctcgtgtctacacacgtgc 9703598
Query: 1308 ccttcttgctgctgctacagccggggcctggatcctggcctttccctgtgactgacacgc 1367
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9703599 ccttcttgctgctgctacagccggggcctggatcccggcctttccctgtgactgacacgc 9703658
Query: 1368 ccatcaccatcggacagctctctaaaccctggtggccctgtgtccgaaccctggaagcag 1427
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9703659 tcatcaccatcggacagctctctgaaccctggtggccctgtgtccgaaccctggaagcag 9703718
Query: 1428 cctttcccttccctcgcctcttcaggcccgggcaccttcaaccttgctgtctcggcaggg 1487
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 9703719 cctttcccttccctcccctcgtcaggcccgggcaccttcaaccttgctgtctcggcaggg 9703778
Query: 1488 cccttggccagctgttgtcacgtgccagctcaccatgaaacgtgccgaagatgtggtgtg 1547
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703779 cccttggccagcggttgtcacgtgccagctcaccatgaaacgtgccgaagatgtggtgtg 9703838
Query: 1548 tcgtgcccagcagagccctgggagcacggccgcttctggaggcttccttgctgagtgtca 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703839 tcgtgcccagcagagccctgggagcacggccgcttctggaggcttccttgctgagtgtca 9703898
Query: 1608 aagtgcctcacgtgcccgtacagcagccacccgcctggcaaacccagtctcaggtgtaat 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703899 aagtgcctcacgtgcccgtacagcagccacccgcctggcaaacccagtctcaggtgtaat 9703958
Query: 1668 gctgcagcgtgtgcccttgctcttttcccgacgagaccggggtggcgggtcttgcttctg 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703959 gctgcagcgtgtgcccttgctcttttcccgacgagaccggggtggcgggtcttgcttctg 9704018
Query: 1728 tgttggcatcgcggcttttcctgctctctgcaaaccagtgctgccaggccctgggctcag 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704019 tgttggcatcgcggcttttcctgctctctgcaaaccagtgctgccaggccctgggctcag 9704078
Query: 1788 tactgttgtgcttaggtgacaagcagcacaacaccaggggccccaagtgggcttactgct 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704079 tactgttgtgcttaggtgacaagcagcacaacaccaggggccccaagtgggcttactgct 9704138
Query: 1848 tggcaggtggccacaaagctggccgtccaccctgccccatgtggccagatgctggcggga 1907
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9704139 tggcaggtggccacaaagctggccgtccaccctgccccatgtggccagatgctggcagga 9704198
Query: 1908 ggctacggtggaacttcctgatccactggaatgactgccaggcactttggtcccaggacc 1967
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9704199 ggctacggtggaacttcctgatccactggaatgactgccaggcaccttggtcccaggacc 9704258
Query: 1968 acctacacccctttccacgtgggtaggcgtttcacttacgaagctggattttcattaaat 2027
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704259 acctacacccctttctacgtgggtaggcgtttcacttacgaagctggattttcattaaat 9704318
Query: 2028 gtgttttttaagaatc 2043
||||||||||||||||
Sbjct: 9704319 gtgttttttaagaatc 9704334
Score = 400 bits (202), Expect = e-108
Identities = 208/210 (99%)
Strand = Plus / Plus
Query: 613 gcgtcactggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 672
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700219 gcgtcgctggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 9700278
Query: 673 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700279 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 9700338
Query: 733 tttaactctcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 792
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700339 tttaactttcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 9700398
Query: 793 atcaccaccgtcttcctcttcgcctgccag 822
||||||||||||||||||||||||||||||
Sbjct: 9700399 atcaccaccgtcttcctcttcgcctgccag 9700428
Score = 391 bits (197), Expect = e-105
Identities = 203/205 (99%)
Strand = Plus / Plus
Query: 409 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9694957 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 9695016
Query: 469 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacgaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9695017 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacaaa 9695076
Query: 529 ggctttgcctgagatggcaccatactcacgttcaactggcacccggtgctcatggtgact 588
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9695077 ggctttgcctgggatggcaccatactcacgttcaactggcacccggtgctcatggtgact 9695136
Query: 589 ggcatggtggtgctctacagtgctg 613
|||||||||||||||||||||||||
Sbjct: 9695137 ggcatggtggtgctctacagtgctg 9695161
Score = 315 bits (159), Expect = 5e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 820 cagtggttcttgggctttgtggtctttctgctgccctgggcgtctgtgcggctgcgcagc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9701373 cagtggttcttgggctttgtggtctttctgctgccctgggcgtctgtgcggctgcgcagc 9701432
Query: 880 ctccttaaacccatccacgtcttctttggagcctccattctctctctggccattgcgtct 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9701433 ctccttaaacccatccacgtcttctttggagcctccattctctctctggccattgcgtct 9701492
Query: 940 gtcatttccggcatcaatgagaagctcttcttcagtttg 978
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9701493 gtcatttccggcatcaatgagaagctcttcttcagtttg 9701531
Score = 315 bits (159), Expect = 5e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 978 gaaaaatggcaccacttcatactccaacctgcccgatgaggccgtcttcgcgaacagtgc 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702230 gaaaaatggcaccacttcatactccaacctgcccgatgaggccgtcttcgcgaacagtgc 9702289
Query: 1038 ggggatgctggtggtggtctttgggctgctggtgctctatatcttacaggcctcgtcttg 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702290 ggggatgctggtggtggtctttgggctgctggtgctctatatcttacaggcctcgtcttg 9702349
Query: 1098 gaaacgcccagagccagggctccaggccgaaagacaggt 1136
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9702350 gaaacgcccagagccagggctccaggccgaaagacaggt 9702388
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 161 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690278 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 9690337
Query: 221 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690338 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 9690397
Query: 281 cggg 284
||||
Sbjct: 9690398 cggg 9690401
Score = 224 bits (113), Expect = 2e-55
Identities = 125/129 (96%)
Strand = Plus / Plus
Query: 283 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccaaccatctgtcaggaaa 342
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9691614 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccagccatctgtcaggaaa 9691673
Query: 343 gtgttcccactatggatttcaagtctgtctcaaagcagcagtccaggaccaggacctctt 402
|||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct: 9691674 gtgttcccactatggatttcaagtctgtctcagagcaacagtccaagaccaggacctctt 9691733
Query: 403 ctagggagg 411
|||||||||
Sbjct: 9691734 ctagggagg 9691742
Score = 174 bits (88), Expect = 1e-40
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 69 tctgggactctcgggagctgcggctccggcgccaggtggcaagacgcgggtctcggagac 128
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690032 tctgggaccctcgggagcggcggctccggcgccaggtggcaagacgcgggtctcggagac 9690091
Query: 129 gccagcctccgtgcatcccactgtggttcgggggtg 164
||||||||||||||||||||||||||||||||||||
Sbjct: 9690092 gccagcctccgtgcatcccactgtggttcgggggtg 9690127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,001,551
Number of extensions: 369
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 9
Length of query: 2076
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2054
Effective length of database: 2,808,408,574
Effective search space: 5768471210996
Effective search space used: 5768471210996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)