Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0052_H06
(1096 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001824.1| clathrin light chain A isoform a [Homo sapiens]. 367 e-101
Alignment gi|NP_001171689.1| clathrin light chain A isoform d [Homo sapie... 356 2e-98
Alignment gi|NP_001070145.1| clathrin light chain A isoform c [Homo sapie... 355 3e-98
Alignment gi|NP_009027.1| clathrin light chain A isoform b [Homo sapiens]. 351 8e-97
Alignment gi|NP_001171690.1| clathrin light chain A isoform e [Homo sapie... 257 2e-68
Alignment gi|NP_001825.1| clathrin light chain B isoform a [Homo sapiens]. 242 5e-64
Alignment gi|NP_009028.1| clathrin light chain B isoform b [Homo sapiens]. 231 1e-60
Alignment gi|NP_001171691.1| clathrin light chain A isoform f [Homo sapie... 224 1e-58
>ref|NP_001824.1| clathrin light chain A isoform a [Homo sapiens].
Length = 218
Score = 367 bits (941), Expect = e-101
Identities = 191/218 (87%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 651
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 652 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001171689.1| clathrin light chain A isoform d [Homo sapiens].
Length = 230
Score = 356 bits (914), Expect = 2e-98
Identities = 190/230 (82%), Positives = 195/230 (84%), Gaps = 18/230 (7%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0052_H06
(1096 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 ... 384 e-107
Alignment gi|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 ... 373 e-104
Alignment gi|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 ... 372 e-103
Alignment gi|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 ... 368 e-102
Alignment gi|XP_003354235.1| PREDICTED: clathrin light chain B-like isofo... 239 2e-63
Alignment gi|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrof... 239 3e-63
Alignment gi|XP_003123718.2| PREDICTED: clathrin light chain B-like isofo... 228 5e-60
>ref|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 [Sus scrofa].
Length = 212
Score = 384 bits (985), Expect = e-107
Identities = 195/212 (91%), Positives = 196/212 (92%)
Frame = +1
Query: 130 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 309
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 310 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 489
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 490 NSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 669
NSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 180
Query: 670 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 212
>ref|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 [Sus scrofa].
Length = 224
Score = 373 bits (958), Expect = e-104
Identities = 194/224 (86%), Positives = 196/224 (87%), Gaps = 12/224 (5%)
Frame = +1
Query: 130 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 309
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 310 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 489
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 490 NSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANN------------RAAEEAFVNDIEE 633
NSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANN +AAEEAFVNDIEE
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQ
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANN------------RAAEEAF 615
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 616 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|NP_001070145.1| clathrin light chain A isoform c [Homo sapiens].
Length = 236
Score = 355 bits (912), Expect = 3e-98
Identities = 191/236 (80%), Positives = 195/236 (82%), Gaps = 24/236 (10%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------ 597
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 598 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_009027.1| clathrin light chain A isoform b [Homo sapiens].
Length = 248
Score = 351 bits (900), Expect = 8e-97
Identities = 191/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------ 597
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 598 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 741
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 742 LKQAPLVH 765
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_001171690.1| clathrin light chain A isoform e [Homo sapiens].
Length = 168
Score = 257 bits (656), Expect = 2e-68
Identities = 135/161 (83%), Positives = 138/161 (85%), Gaps = 6/161 (3%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANN 594
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANN
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
>ref|NP_001825.1| clathrin light chain B isoform a [Homo sapiens].
Length = 211
Score = 242 bits (617), Expect = 5e-64
Identities = 125/207 (60%), Positives = 1LQKTKANNSTNINHPCYSLEQAAEEAFVNDIEE 180
Query: 634 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 224
>ref|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 [Sus scrofa].
Length = 230
Score = 372 bits (956), Expect = e-103
Identities = 195/230 (84%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +1
Query: 130 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 309
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 310 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 489
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 490 NSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------AAEEAF 615
NSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR AAEEAF
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAF 180
Query: 616 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 [Sus scrofa].
Length = 242
Score = 368 bits (944), Expect = e-102
Identities = 195/242 (80%), Positives = 196/242 (80%), Gaps = 30/242 (12%)
Frame = +1
Query: 130 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 309
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 310 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 489
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 490 NSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------------ 597
NSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHP 180
Query: 598 ------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 759
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL
Sbjct: 181 CYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 240
Query: 760 VH 765
VH
Sbjct: 241 VH 242
>ref|XP_003354235.1| PREDICTED: clathrin light chain B-like isoform 2 [Sus scrofa].
Length = 211
Score = 239 bits (610), Expect = 2e-63
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 318
D FG + G EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62
Query: 319 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 498
+ + +NG+ +Q++NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 499 KQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 678
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 679 FNPKSSKQAKDVSRMRSVLISLKQAPL 759
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrofa].
Length = 160
Score = 239 bits (609), Expect = 3e-63
Identities = 137/212 (64%), Positives = 142/212 (66%)
Fr48/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 318
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 319 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 498
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 499 KQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 678
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 679 FNPKSSKQAKDVSRMRSVLISLKQAPL 759
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|NP_009028.1| clathrin light chain B isoform b [Homo sapiens].
Length = 229
Score = 231 bits (588), Expect = 1e-60
Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 318
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 319 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 498
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 499 KQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 624
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 625 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 759
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>ref|NP_001171691.1| clathrin light chain A isoform f [Homo sapiens].
Length = 166
Score = 224 bits (571), Expect = 1e-58
Identities = 134/218 (61%), Positives = 142/218 (65%), Gaps = 6/218 (2%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIA
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIA---------------- 44
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
G+ N E + +G + EP
Sbjct: 45 ----------------GIENDEAFAILDGGAPG-------PQPHGEPPG----------- 70
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 651
DANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 71 --GPDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 128
Query: 652 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 166
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,634,158
Number of extensions: 749865
Number of successful extensions: 3780
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3674
Number of HSP's successfully gapped: 9
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
ame = +1
Query: 130 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 309
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA---------------------- 38
Query: 310 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 489
G+ N E + +G + EP DA
Sbjct: 39 ----------GIENDEAFAILDGGAPG-------PQPHGEPPG-------------GPDA 68
Query: 490 NSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 669
NSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 69 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 128
Query: 670 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 160
>ref|XP_003123718.2| PREDICTED: clathrin light chain B-like isoform 1 [Sus scrofa].
Length = 229
Score = 228 bits (581), Expect = 5e-60
Identities = 123/225 (54%), Positives = 147/225 (65%), Gaps = 19/225 (8%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 318
D FG + G EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62
Query: 319 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 498
+ + +NG+ +Q++NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 499 KQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 624
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 625 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 759
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,067,068
Number of extensions: 566113
Number of successful extensions: 2247
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2206
Number of HSP's successfully gapped: 8
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA TCH01_0052_H06
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0052_H06
(1096 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073853.1| clathrin light chain A isoform a [Mus muscul... 368 e-102
Alignment gi|NP_001073855.1| clathrin light chain A isoform d [Mus muscul... 363 e-100
Alignment gi|NP_058040.2| clathrin light chain A isoform c [Mus musculus]. 357 1e-98
Alignment gi|NP_001073854.1| clathrin light chain A isoform b [Mus muscul... 352 3e-97
Alignment gi|NP_083146.1| clathrin light chain B [Mus musculus]. 238 6e-63
>ref|NP_001073853.1| clathrin light chain A isoform a [Mus musculus].
Length = 218
Score = 368 bits (944), Expect = e-102
Identities = 191/218 (87%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 651
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 652 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001073855.1| clathrin light chain A isoform d [Mus musculus].
Length = 216
Score = 363 bits (933), Expect = e-100
Identities = 191/218 (87%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPG--DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 118
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 651
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 119 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 178
Query: 652 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 179 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 216
>ref|NP_058040.2| clathrin light chain A isoform c [Mus musculus].
Length = 236
Score = 357 bits (915), Expect = 1e-98
Identities = 191/236 (80%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------ 597
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 598 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_001073854.1| clathrin light chain A isoform b [Mus musculus].
Length = 248
Score = 352 bits (903), Expect = 3e-97
Identities = 191/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +1
Query: 130 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------ 597
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 598 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 741
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 742 LKQAPLVH 765
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_083146.1| clathrin light chain B [Mus musculus].
Length = 211
Score = 238 bits (607), Expect = 6e-63
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 318
+ FG + G A EEDPAAAFLAQQESEIAGIEND F A
Sbjct: 3 EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62
Query: 319 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 498
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122
Query: 499 KQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 678
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 679 FNPKSSKQAKDVSRMRSVLISLKQAPL 759
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,668,831
Number of extensions: 629580
Number of successful extensions: 3043
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2981
Number of HSP's successfully gapped: 5
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0052_H06
(1096 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776447.1| clathrin light chain A [Bos taurus]. 354 7e-98
Alignment gi|NP_776702.1| clathrin light chain B [Bos taurus]. 246 3e-65
>ref|NP_776447.1| clathrin light chain A [Bos taurus].
Length = 243
Score = 354 bits (909), Expect = 7e-98
Identities = 189/243 (77%), Positives = 194/243 (79%), Gaps = 31/243 (12%)
Frame = +1
Query: 130 MADLDPFGAPAG-PSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXX 306
MA+LDPFG PAG P+LGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGVPAGGPALGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGSQPH 60
Query: 307 XXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 486
DAVDGV NG+YYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD
Sbjct: 61 GEPPGIPDAVDGVTNGDYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 120
Query: 487 ANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR----------------------- 597
ANSRKQEAEWKEKA+KEL+EWYARQDEQLQKTKANNR
Sbjct: 121 ANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINH 180
Query: 598 -------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 756
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP
Sbjct: 181 PCYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 240
Query: 757 LVH 765
LVH
Sbjct: 241 LVH 243
>ref|NP_776702.1| clathrin light chain B [Bos taurus].
Length = 210
Score = 246 bits (627), Expect = 3e-65
Identities = 124/206 (60%), Positives = 147/206 (71%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 321
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASG 62
Query: 322 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 501
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 ASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 122
Query: 502 QEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 681
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 123 MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 182
Query: 682 NPKSSKQAKDVSRMRSVLISLKQAPL 759
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 NPKSSKQCKDVSRLRSVLMSLKQTPL 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,084,965
Number of extensions: 784306
Number of successful extensions: 3465
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3432
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length o
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0052_H06
(1096 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866787.1| PREDICTED: similar to clathrin, light polypepti... 369 e-102
Alignment gi|XP_866825.1| PREDICTED: similar to Clathrin light chain A (L... 358 4e-99
Alignment gi|XP_866761.1| PREDICTED: similar to Clathrin light chain A (L... 358 7e-99
Alignment gi|XP_531996.2| PREDICTED: similar to Clathrin light chain A (L... 353 2e-97
Alignment gi|XP_866835.1| PREDICTED: similar to clathrin, light polypepti... 264 1e-70
Alignment gi|XP_866066.1| PREDICTED: similar to clathrin, light polypepti... 243 2e-64
Alignment gi|XP_866115.1| PREDICTED: similar to clathrin, light polypepti... 242 5e-64
Alignment gi|XP_866083.1| PREDICTED: similar to clathrin, light polypepti... 240 2e-63
Alignment gi|XP_866050.1| PREDICTED: similar to clathrin, light polypepti... 240 2e-63
Alignment gi|XP_866801.1| PREDICTED: similar to Clathrin light chain A (L... 234 8e-62
>ref|XP_866787.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 3 [Canis familiaris].
Length = 218
Score = 369 bits (947), Expect = e-102
Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 130 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 651
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 652 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|XP_866825.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 6 [Canis
familiaris].
Length = 230
Score = 358 bits (920), Expect = 4e-99
Identities = 191/230 (83%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +1
Quef database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
ry: 130 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANN------------RAAEEAF 615
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 616 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_866761.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 2 [Canis
familiaris].
Length = 236
Score = 358 bits (918), Expect = 7e-99
Identities = 192/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +1
Query: 130 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------ 597
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 598 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|XP_531996.2| PREDICTED: similar to Clathrin light chain A (Lca) isoform 1 [Canis
familiaris].
Length = 248
Score = 353 bits (906), Expect = 2e-97
Identities = 192/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +1
Query: 130 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNR------------------ 597
LEALDANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 598 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 741
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 742 LKQAPLVH 765
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|XP_866835.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 7 [Canis familiaris].
Length = 139
Score = 264 bits (675), Expect = 1e-70
Identities = 131/134 (97%), Positives = 134/134 (100%)
Frame = +1
Query: 364 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAMKELE 543
+ESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKA+KELE
Sbjct: 6 RESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 65
Query: 544 EWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRM 723
EWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRM
Sbjct: 66 EWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRM 125
Query: 724 RSVLISLKQAPLVH 765
RSVLISLKQAPLVH
Sbjct: 126 RSVLISLKQAPLVH 139
>ref|XP_866066.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
3 [Canis familiaris].
Length = 207
Score = 243 bits (620), Expect = 2e-64
Identities = 124/206 (60%), Positives = 149/206 (72%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 321
D FG + G A EEDPAAAFLAQQESEIAGIENDE F + +
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGLSNGYCHVFVLSLAGS- 61
Query: 322 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 501
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 62 --EDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 119
Query: 502 QEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 681
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 120 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 179
Query: 682 NPKSSKQAKDVSRMRSVLISLKQAPL 759
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 180 NPKSSKQCKDVSRLRSVLMSLKQTPL 205
>ref|XP_866115.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
5 [Canis familiaris].
Length = 211
Score = 242 bits (617), Expect = 5e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 318
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAQPGPAGG 62
Query: 319 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 498
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 499 KQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 678
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 679 FNPKSSKQAKDVSRMRSVLISLKQAPL 759
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|XP_866083.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
4 [Canis familiaris].
Length = 213
Score = 240 bits (613), Expect = 2e-63
Identities = 125/209 (59%), Positives = 148/209 (70%), Gaps = 3/209 (1%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF---AILDXXXXXXXXXXX 312
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAHASACPP 62
Query: 313 XXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDAN 492
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA
Sbjct: 63 STAGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA 122
Query: 493 SRKQEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARL 672
S+ E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+L
Sbjct: 123 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL 182
Query: 673 CDFNPKSSKQAKDVSRMRSVLISLKQAPL 759
CDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 CDFNPKSSKQCKDVSRLRSVLMSLKQTPL 211
>ref|XP_866050.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
2 [Canis familiaris].
Length = 208
Score = 240 bits (613), Expect = 2e-63
Identities = 124/206 (60%), Positives = 146/206 (70%)
Frame = +1
Query: 142 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 321
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGA--PAGNSGEEEGPRYG 60
Query: 322 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 501
+ +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 61 PLGDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 120
Query: 502 QEAEWKEKAMKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 681
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 121 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 180
Query: 682 NPKSSKQAKDVSRMRSVLISLKQAPL 759
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 181 NPKSSKQCKDVSRLRSVLMSLKQTPL 206
>ref|XP_866801.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 4 [Canis
familiaris].
Length = 178
Score = 234 bits (598), Expect = 8e-62
Identities = 143/230 (62%), Positives = 150/230 (65%), Gaps = 18/230 (7%)
Frame = +1
Query: 130 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 291
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAIL
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAIL----- 55
Query: 292 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 471
DG G + EP +
Sbjct: 56 ---------------DGGAPGP-------------------QPHGEPPGVP--------- 72
Query: 472 LEALDANSRKQEAEWKEKAMKELEEWYARQDEQLQKTKANN------------RAAEEAF 615
DANSRKQEAEWKEKA+KELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 73 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 128
Query: 616 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 765
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,282,281
Number of extensions: 764747
Number of successful extensions: 3823
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3740
Number of HSP's successfully gapped: 14
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0052_H06
(1096 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 634 e-179
Sscrofa_Chr14 125 5e-26
Sscrofa_Chr17 107 1e-20
Sscrofa_Chr02 66 4e-08
>Sscrofa_Chr01
|| Length = 315321322
Score = 634 bits (320), Expect = e-179
Identities = 320/320 (100%)
Strand = Plus / Plus
Query: 9 ctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgctgccgggcgcg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772795 ctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgctgccgggcgcg 264772854
Query: 69 gttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagttgaacgcctgc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772855 gttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagttgaacgcctgc 264772914
Query: 129 catggctgatttagatccgttcggcgcccccgccggcccctcgctggggaacggagtggc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772915 catggctgatttagatccgttcggcgcccccgccggcccctcgctggggaacggagtggc 264772974
Query: 189 cggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772975 cggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcat 264773034
Query: 249 cgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccgcacgg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264773035 cgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccgcacgg 264773094
Query: 309 cgagccgccggggggtccgg 328
||||||||||||||||||||
Sbjct: 264773095 cgagccgccggggggtccgg 264773114
Score = 561 bits (283), Expect = e-157
Identities = 354/375 (94%), Gaps = 7/375 (1%)
Strand = Plus / Plus
Query: 676 gactttaaccccaagtccagcaagcaggccaaagatgtctcccgcatgcgttctgtcctc 735
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 259949920 gactttaaccccaagtccagcaagcaggccaaagatgtctctcacatgtgttctgtcctc 259949979
Query: 736 atctccctcaagcagg-cccccctggtgcactgaagagccaccatgtggaaacactacat 794
| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 259949980 agctctctcaagcaggtcccccctggtgcactgaagagccacgctgtggaaacactacat 259950039
Query: 795 ctgcaatatcttaatcctactcagtgaagctcttcacagtaattggattaattatgttga 854
|| |||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 259950040 cttcaatatcttactcctacttagtgaagctcttcacagtaattggattaattttattga 259950099
Query: 855 gttcttttggaccaaacctttttgtctttagagttgatcattgtttgtgattgcatgttt 914
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 259950100 gttcttttggaccaaacctttt-gcctttagagttgatcattgtttgtgattgcatgttt 259950158
Query: 915 ccttcaactgtgttctccctggcattcagagaggagcggaggcgcccagggaagggaggg 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 259950159 ccttcaactgtgttctccctggcattcagagaggagaggaggcgcccagggaagggaggg 259950218
Query: 975 aggcctcccaagggcagcctcaacctctgcttttgtgc-----attattctgagaataaa 1029
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 259950219 aggcctcccaagggcagcctcaacctctgcttttgtgcataggattattctgagaataaa 259950278
Query: 1030 tttctgtttaaaact 1044
|||||||||||||||
Sbjct: 259950279 tttctgtttaaaact 259950293
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 365 aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783240 aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 264783299
Query: 425 cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783300 cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 264783359
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 328 gatgccgttgatggagtgatgaatggcgaatactaccagg 367
||||||||||||||||||||||||||||||||||||||||
Sbjct: 264780812 gatgccgttgatggagtgatgaatggcgaatactaccagg 264780851
>Sscrofa_Chr14
|| Length = 153851969
Score = 125 bits (63), Expect = 5e-26
Identities = 148/175 (84%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 782 ggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaattgga 841
|||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 141192918 ggaaacactacatctgcagtatcttaatcctacttagtgacgctcttcacagtaattagg 141192859
Query: 842 ttaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcattgtttg 901
| ||| ||||||| |||||| ||||| | || | |||||||| | || ||| |||||
Sbjct: 141192858 tgaatcatgttgaattctttcagaccaga-ctgtccgtctttagggctggtcagagtttg 141192800
Query: 902 tgattgcatgtttccttcaactgtgttctccctggcattcagagaggagcggagg 956
||||||||||||||| || ||||| || ||||||||||||||||||| |||||
Sbjct: 141192799 acattgcatgtttccttgaaatgtgtccttcctggcattcagagaggaggggagg 141192745
Score = 77.8 bits (39), Expect = 1e-11
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 640 ccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagcaag 699
|||||||| |||||| ||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 141193041 ccaggcactgagtgg-aacaggtggcccagctgtgtggctttaaccccaagtccagcaag 141192983
Query: 700 cag 702
|||
Sbjct: 141192982 cag 141192980
>Sscrofa_Chr17
|| Length = 69701581
Score = 107 bits (54), Expect = 1e-20
Identities = 113/129 (87%), Gaps = 4/129 (3%)
Strand = Plus / Minus
Query: 806 taatcctactcagtgaagctcttcacagtaattggattaattatgttgagttc-ttttgg 864
||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||| ||
Sbjct: 20461893 taatcctcctcagtgaagtgcttcacagtgattggattaattatgttgagttcatttcgg 20461834
Query: 865 accaaacctttttgtctttagagttgatcattgtttgtgattgcatgtttccttcaactg 924
|||||||| ||||||||| |||| |||||| |||||||||| ||| ||||||||| ||
Sbjct: 20461833 accaaacc-ttttgtcttcagagctgatcactgtttgtgatggca--cttccttcaagtg 20461777
Query: 925 tgttctccc 933
| |||||||
Sbjct: 20461776 tattctccc 20461768
>Sscrofa_Chr02
|| Length = 162569375
Score = 65.9 bits (33), Expect = 4e-08
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 192 cgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcga 251
||||||||||||||| || |||||| |||| ||||||||||| || || || ||||| ||
Sbjct: 83066821 cgaggaggacccggcggctgccttcctggcccagcaggagagtgaaatcgcgggcataga 83066880
Query: 252 gaacgacgaggccttcg 268
||| ||||||| |||||
Sbjct: 83066881 gaatgacgagggcttcg 83066897
Score = 65.9 bits (33), Expect = 4e-08
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 638 ccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagca 697
||||||| || |||||||| |||||||| |||||||||||| ||||||||| |||||
Sbjct: 83135914 ccccaggtacagagtgggagaaggtggcccagctgtgtgacttcaaccccaagagcagca 83135973
Query: 698 agcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcag 750
|||| |||||| || |||||| |||| || || ||||| ||||| ||||||
Sbjct: 83135974 agcaatgcaaagacgtgtcccgcctgcgctcggtgctcatgtccctgaagcag 83136026
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,190,053
Number of extensions: 255
Number of successful extensions: 255
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 10
Length of query: 1096
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1075
Effective length of database: 2,808,413,156
Effective search space: 3019044142700
Effective search space used: 3019044142700
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)