Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0059_C07
(1496 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001640.1| amine oxidase [flavin-containing] A [Sus scr... 363 e-100
Alignment gi|NP_001001864.1| amine oxidase [flavin-containing] B [Sus scr... 272 4e-73
>ref|NP_001001640.1| amine oxidase [flavin-containing] A [Sus scrofa].
Length = 527
Score = 363 bits (932), Expect = e-100
Identities = 177/204 (86%), Positives = 177/204 (86%)
Frame = +1
Query: 43 MERQEKANNAXXXXXXXXXXXXXXXLSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENX 222
MERQEKANNA LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNEN
Sbjct: 1 MERQEKANNAGHMVDVVVIGGGISGLSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENV 60
Query: 223 XXXXXXXXXXXPTQNRILRLSKELGLETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIA 402
PTQNRILRLSKELGLETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIA
Sbjct: 61 DYVDVGGAYVGPTQNRILRLSKELGLETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIA 120
Query: 403 YLDYNNLWRTMDDMGKKIPADAPWESPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNI 582
YLDYNNLWRTMDDMGKKIPADAPWESPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNI
Sbjct: 121 YLDYNNLWRTMDDMGKKIPADAPWESPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNI 180
Query: 583 NVTSEPHEVSALWFLWYVKQCGGT 654
NVTSEPHEVSALWFLWYVKQCGGT
Sbjct: 181 NVTSEPHEVSALWFLWYVKQCGGT 204
Score = 353 bits (907), Expect = 1e-97
Identities = 173/188 (92%), Positives = 174/188 (92%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDGSLPAIMGFILARKADRLAKVHKE+RKRKICELYAKVLGSQEA HPVHYEEKNWCE
Sbjct: 340 TKPDGSLPAIMGFILARKADRLAKVHKEVRKRKICELYAKVLGSQEASHPVHYEEKNWCE 399
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYM I
Sbjct: 400 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMEGAVEAGERAAREI 459
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY 1191
LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY
Sbjct: 460 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY 519
Query: 1192 KFRLLTRS 1215
KFRLLTRS
Sbjct: 520 KFRLLTRS 527
>ref|NP_001001864.1| amine oxidase [flavin-containing] B [Sus scrofa].
Length = 520
Score = 272 bits (695), Expect = 4e-73
Identities = 125/179 (69%), Positives = 152/179 (84%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
++AAKLL++ G+NV+VLEARDRVGGRTYTVRN+ PTQNRILRLSKELG
Sbjct: 17 MAAAKLLHDSGLNVIVLEARDRVGGRTYTVRNQQVKYVDLGGSYVGPTQNRILRLSKELG 76
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVN E L+ YVKGKSYPFRG PPV NPI +LD NNLWRT+DDMG++IP+DAPW+
Sbjct: 77 LETYKVNEVERLIHYVKGKSYPFRGPLPPVRNPITFLDLNNLWRTVDDMGREIPSDAPWK 136
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+P AE+WD+MTMK+L+DK+CWT+++K+ A+LFVN+ VT+E HEVSALWFLWYVKQCGGT
Sbjct: 137 APLAEQWDQMTMKELLDKLCWTESSKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGT 195
Score = 244 bits (624), Expect = 7e-65
Identities = 122/189 (64%), Positives = 144/189 (76%), Gaps = 2/189 (1%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
+KPDGS AI+GFILA KA +LA++ KE R +K+C+LYAKVLGS+EAL+PVHYEEKNWCE
Sbjct: 331 SKPDGSCAAIIGFILAHKARKLARLTKEERLKKLCDLYAKVLGSKEALNPVHYEEKNWCE 390
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYS GCYT YFPPGIMTQYGRV+RQPVGRI+FAGTETAT WSGYM I
Sbjct: 391 EQYSAGCYTTYFPPGIMTQYGRVLRQPVGRIYFAGTETATHWSGYMEGAVEAGERAAREI 450
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFST--SVTALWLA 1185
L+A+GK+ + +IW EPES DVPA IT TF ER+LPSV GLL++IG + S TAL
Sbjct: 451 LHAMGKIPEDEIWQSEPESVDVPAKPITTTFLERHLPSVPGLLRLIGLTAIFSATALGYL 510
Query: 1186 VYKFRLLTR 1212
+K LL R
Sbjct: 511 AHKRGLLVR 519
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,208,439
Number of extensions: 909837
Number of successful extensions: 2419
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2419
Number of HSP's successfully gapped: 4
Length of query: 498
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 395
Effective length of database: 8,779,541
Effective search space: 3467918695
Effective search space used: 3467918695
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA TCH01_0059_C07
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0059_C07
(1496 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000231.1| amine oxidase [flavin-containing] A [Homo sapie... 323 2e-88
Alignment gi|NP_000889.3| amine oxidase [flavin-containing] B [Homo sapie... 280 3e-75
>ref|NP_000231.1| amine oxidase [flavin-containing] A [Homo sapiens].
Length = 527
Score = 323 bits (829), Expect = 2e-88
Identities = 155/188 (82%), Positives = 168/188 (89%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDGSLPAIMGFILARKADRLAK+HKEIRK+KICELYAKVLGSQEALHPVHYEEKNWCE
Sbjct: 340 TKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCE 399
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETAT+WSGYM +
Sbjct: 400 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREV 459
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY 1191
LN LGKV++KDIW++EPES+DVPA EIT TFWERNLPSV+GLLKIIGFSTSVTAL +Y
Sbjct: 460 LNGLGKVTEKDIWVQEPESKDVPAVEITHTFWERNLPSVSGLLKIIGFSTSVTALGFVLY 519
Query: 1192 KFRLLTRS 1215
K++LL RS
Sbjct: 520 KYKLLPRS 527
Score = 322 bits (825), Expect = 6e-88
Identities = 154/204 (75%), Positives = 170/204 (83%)
Frame = +1
Query: 43 MERQEKANNAXXXXXXXXXXXXXXXLSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENX 222
ME QEKA+ A LSAAKLL EYG++VLVLEARDRVGGRTYT+RNE+
Sbjct: 1 MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHV 60
Query: 223 XXXXXXXXXXXPTQNRILRLSKELGLETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIA 402
PTQNRILRLSKELG+ETYKVNV+E LVQYVKGK+YPFRGAFPPVWNPIA
Sbjct: 61 DYVDVGGAYVGPTQNRILRLSKELGIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIA 120
Query: 403 YLDYNNLWRTMDDMGKKIPADAPWESPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNI 582
YLDYNNLWRT+D+MGK+IP DAPWE+ HA++WDKMTMK+LIDKICWTKTA+RFA LFVNI
Sbjct: 121 YLDYNNLWRTIDNMGKEIPTDAPWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNI 180
Query: 583 NVTSEPHEVSALWFLWYVKQCGGT 654
NVTSEPHEVSALWFLWYVKQCGGT
Sbjct: 181 NVTSEPHEVSALWFLWYVKQCGGT 204
>ref|NP_000889.3| amine oxidase [flavin-containing] B [Homo sapiens].
Length = 520
Score = 280 bits (715), Expect = 3e-75
Identities = 127/179 (70%), Positives = 153/179 (85%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
++AAKLL++ G+NV+VLEARDRVGGRTYT+RN+ PTQNRILRL+KELG
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVN E L+ +VKGKSYPFRG FPPVWNPI YLD+NN WRTMDDMG++IP+DAPW+
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+P AEEWD MTMK+L+DK+CWT++AK+ A+LFVN+ VT+E HEVSALWFLWYVKQCGGT
Sbjct: 137 APLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGT 195
Score = 245 bits (626), Expect = 7e-65
Identities = 123/189 (65%), Positives = 143/189 (75%), Gaps = 2/189 (1%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKP+G+ AIMGFILA KA +LA++ KE R +K+CELYAKVLGS EAL PVHYEEKNWCE
Sbjct: 331 TKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCE 390
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYT YFPPGI+TQYGRV+RQPV RI+FAGTETAT WSGYM I
Sbjct: 391 EQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREI 450
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFST--SVTALWLA 1185
L+A+GK+ + +IW EPES DVPA IT TF ER+LPSV GLL++IG +T S TAL
Sbjct: 451 LHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTTIFSATALGFL 510
Query: 1186 VYKFRLLTR 1212
+K LL R
Sbjct: 511 AHKRGLLVR 519
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,274,935
Number of extensions: 1454625
Number of successful extensions: 3804
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3803
Number of HSP's successfully gapped: 4
Length of query: 498
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 391
Effective length of database: 14,770,016
Effective search space: 5775076256
Effective search space used: 5775076256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0059_C07
(1496 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851357.2| amine oxidase [flavin-containing] A [Bos taurus]. 329 3e-90
Alignment gi|NP_808813.2| amine oxidase [flavin-containing] B [Bos taurus]. 273 4e-73
>ref|NP_851357.2| amine oxidase [flavin-containing] A [Bos taurus].
Length = 527
Score = 329 bits (844), Expect = 3e-90
Identities = 155/188 (82%), Positives = 170/188 (90%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDGSLPAIMGFILARKADRLAKVHK+IRKRKICELYAKVLGSQEALHPVHYEEKNWC+
Sbjct: 340 TKPDGSLPAIMGFILARKADRLAKVHKDIRKRKICELYAKVLGSQEALHPVHYEEKNWCQ 399
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRI+FAGTETATQWSGYM +
Sbjct: 400 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREV 459
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY 1191
LNALGK+S KDIW++EPE+EDVPA EIT +FWERNLPSV+GLLKI+GFSTS+TALW +Y
Sbjct: 460 LNALGKLSAKDIWIQEPEAEDVPAVEITPSFWERNLPSVSGLLKIVGFSTSITALWFVMY 519
Query: 1192 KFRLLTRS 1215
+FRLL+RS
Sbjct: 520 RFRLLSRS 527
Score = 319 bits (818), Expect = 4e-87
Identities = 154/204 (75%), Positives = 169/204 (82%)
Frame = +1
Query: 43 MERQEKANNAXXXXXXXXXXXXXXXLSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENX 222
ME +K ++A LSAAKLL E+ +NVLVLEAR+RVGGRTYTVRNE+
Sbjct: 1 MESLQKTSDAGQMFDVVVIGGGISGLSAAKLLAEHEVNVLVLEARERVGGRTYTVRNEHV 60
Query: 223 XXXXXXXXXXXPTQNRILRLSKELGLETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIA 402
PTQNRILRLSK+LGLETYKVNVNE LV YVKGK+YPFRGAFPPVWNPIA
Sbjct: 61 DYVDVGGAYVGPTQNRILRLSKQLGLETYKVNVNERLVHYVKGKTYPFRGAFPPVWNPIA 120
Query: 403 YLDYNNLWRTMDDMGKKIPADAPWESPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNI 582
YLDYNNLWRTMD+MGK+IPADAPWE+PHA EWDKMTMKDLI+KICWTKTA++FASLFVNI
Sbjct: 121 YLDYNNLWRTMDNMGKEIPADAPWEAPHAVEWDKMTMKDLIEKICWTKTARQFASLFVNI 180
Query: 583 NVTSEPHEVSALWFLWYVKQCGGT 654
NVTSEPHEVSALWFLWYVKQCGGT
Sbjct: 181 NVTSEPHEVSALWFLWYVKQCGGT 204
>ref|NP_808813.2| amine oxidase [flavin-containing] B [Bos taurus].
Length = 520
Score = 273 bits (697), Expect = 4e-73
Identities = 125/179 (69%), Positives = 151/179 (84%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
++AAKLL++ G+NV+VLEARDRVGGRTYT+RN+ PTQN ILRLSKELG
Sbjct: 17 MAAAKLLHDSGLNVIVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNHILRLSKELG 76
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVN E L+ + KGKSYPFRG+FP VWNPI YLD+NNLWRTMDDMG++IP+DAPW+
Sbjct: 77 LETYKVNEVERLIHHTKGKSYPFRGSFPSVWNPITYLDHNNLWRTMDDMGREIPSDAPWK 136
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+P AE+WD MTMK+L+DKICWT+++K+ A LFVN+ VT+E HEVSALWFLWYVKQCGGT
Sbjct: 137 APLAEQWDLMTMKELLDKICWTESSKQLAILFVNLCVTAEIHEVSALWFLWYVKQCGGT 195
Score = 260 bits (664), Expect = 3e-69
Identities = 129/189 (68%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDGS PAI+GFILA KA +LA++ KE R +K+C+LYAKVLGSQEALHPVHYEEKNWCE
Sbjct: 331 TKPDGSYPAIIGFILAHKARKLARLTKEERLKKLCDLYAKVLGSQEALHPVHYEEKNWCE 390
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYT+YFPPGIMTQYGRV+RQPVGRI+FAGTETAT WSGYM I
Sbjct: 391 EQYSGGCYTSYFPPGIMTQYGRVLRQPVGRIYFAGTETATHWSGYMEGAVEAGERAAREI 450
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFST--SVTALWLA 1185
L+A+GK+ + +IWL EPES DVPA IT TF +R+LPSV GLLK+IG +T S TAL
Sbjct: 451 LHAMGKIPEDEIWLPEPESVDVPAKPITTTFLQRHLPSVPGLLKLIGLTTIFSATALGYL 510
Query: 1186 VYKFRLLTR 1212
+K LL R
Sbjct: 511 AHKRGLLVR 519
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,732,086
Number of extensions: 1423481
Number of successful extensions: 3795
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3795
Number of HSP's successfully gapped: 4
Length of query: 498
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 392
Effective length of database: 14,174,046
Effective search space: 5556226032
Effective search space used: 5556226032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0059_C07
(1496 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776101.3| amine oxidase [flavin-containing] A [Mus muscul... 317 1e-86
Alignment gi|NP_766366.2| amine oxidase [flavin-containing] B [Mus muscul... 276 4e-74
>ref|NP_776101.3| amine oxidase [flavin-containing] A [Mus musculus].
Length = 526
Score = 317 bits (813), Expect = 1e-86
Identities = 149/179 (83%), Positives = 161/179 (89%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
L+AAKLL+EY INVLVLEARDRVGGRTYTVRNE+ PTQNRILRLSKELG
Sbjct: 26 LAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELG 85
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
+ETYKVNVNE LVQYVKGK+YPFRGAFPPVWNP+AYLDYNNLWRTMDDMGK+IP DAPW+
Sbjct: 86 IETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDDMGKEIPVDAPWQ 145
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+ HAEEWDK+TMKDLIDKICWTKTA+ FA LFVNINVTSEPHEVSALWFLWYV+QCGGT
Sbjct: 146 ARHAEEWDKITMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGT 204
Score = 302 bits (774), Expect = 4e-82
Identities = 146/183 (79%), Positives = 158/183 (86%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDGS+PAIMGFILARKA+RLAK+HK+IRKRKICELYAKVLGSQEAL PVHYEEKNWCE
Sbjct: 340 TKPDGSMPAIMGFILARKAERLAKLHKDIRKRKICELYAKVLGSQEALSPVHYEEKNWCE 399
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYTAYFPPGIMT YGRVIRQPVGRI+FAGTETATQWSGYM +
Sbjct: 400 EQYSGGCYTAYFPPGIMTLYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREV 459
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY 1191
LNALGKV+KKDIW++EPES+DVPA EIT TF ERNLPSV GLLKI GFSTSV L +Y
Sbjct: 460 LNALGKVAKKDIWVQEPESKDVPALEITHTFLERNLPSVPGLLKITGFSTSVALLCFVLY 519
Query: 1192 KFR 1200
KF+
Sbjct: 520 KFK 522
>ref|NP_766366.2| amine oxidase [flavin-containing] B [Mus musculus].
Length = 520
Score = 276 bits (705), Expect = 4e-74
Identities = 127/179 (70%), Positives = 152/179 (84%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
++AAKLL++ G++V+VLEARDRVGGRTYT+RN+N PTQNRILRL+KELG
Sbjct: 17 MAAAKLLHDCGLSVVVLEARDRVGGRTYTIRNKNVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVN E L+ +VKGKSY FRG FPPVWNPI YLD NNLWRTMD+MG++IP+DAPW+
Sbjct: 77 LETYKVNEVERLIHFVKGKSYAFRGPFPPVWNPITYLDNNNLWRTMDEMGQEIPSDAPWK 136
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+P AEEWD MTMK+L+DKICWTK+ K+ A+LFVN+ VT+E HEVSALWFLWYVKQCGGT
Sbjct: 137 APLAEEWDYMTMKELLDKICWTKSTKQIATLFVNLCVTAETHEVSALWFLWYVKQCGGT 195
Score = 244 bits (622), Expect = 2e-64
Identities = 121/183 (66%), Positives = 139/183 (75%), Gaps = 2/183 (1%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDG+ AIMGFILA KA +L ++ KE R RK+CELYAKVL SQEAL PVHYEEKNWCE
Sbjct: 331 TKPDGTYAAIMGFILAHKARKLVRLTKEERLRKLCELYAKVLNSQEALQPVHYEEKNWCE 390
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYT YFPPGI+TQYGRV+RQPVG+IFFAGTETA+ WSGYM I
Sbjct: 391 EQYSGGCYTTYFPPGILTQYGRVLRQPVGKIFFAGTETASHWSGYMEGAVEAGERAAREI 450
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFST--SVTALWLA 1185
L+A+GK+ + +IW EPES DVPA IT TF ER+LPSV GLLK+ G +T S TAL
Sbjct: 451 LHAIGKIPEDEIWQPEPESLDVPARPITSTFLERHLPSVPGLLKLFGLTTILSATALGFL 510
Query: 1186 VYK 1194
+K
Sbjct: 511 AHK 513
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,878,288
Number of extensions: 1231157
Number of successful extensions: 3378
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3377
Number of HSP's successfully gapped: 4
Length of query: 498
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 392
Effective length of database: 12,433,743
Effective search space: 4874027256
Effective search space used: 4874027256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0059_C07
(1496 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002969.1| amine oxidase [flavin-containing] A [Canis l... 326 4e-89
Alignment gi|XP_855548.1| PREDICTED: monoamine oxidase A [Canis familiari... 326 4e-89
Alignment gi|NP_001002970.1| amine oxidase [flavin-containing] B [Canis l... 283 4e-76
Alignment gi|XP_855549.1| PREDICTED: monoamine oxidase B [Canis familiari... 283 4e-76
>ref|NP_001002969.1| amine oxidase [flavin-containing] A [Canis lupus familiaris].
Length = 527
Score = 326 bits (835), Expect = 4e-89
Identities = 155/179 (86%), Positives = 164/179 (91%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
LSAAKLL E+ ++VLVLEARDRVGGRTYTVRNE+ PTQNRILRLSKELG
Sbjct: 26 LSAAKLLAEHEVDVLVLEARDRVGGRTYTVRNEHVDYVDVGGAYVGPTQNRILRLSKELG 85
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVNVNE LVQYVKGK+YPFRGAFPPVWNPIAYLDYNNLWRTMD+MGK+IPADAPWE
Sbjct: 86 LETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTMDNMGKEIPADAPWE 145
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+PHAEEWDKMTMKDLIDKICWTKTA+RFASLFVNINVTSEPHEVSALWFLWYVKQCGGT
Sbjct: 146 APHAEEWDKMTMKDLIDKICWTKTARRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 204
Score = 317 bits (813), Expect = 1e-86
Identities = 152/188 (80%), Positives = 164/188 (87%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDGSLPAIMGFILARKADRLAK+HKEIRKRKICELYAKVLGSQEAL PVHYEEKNWCE
Sbjct: 340 TKPDGSLPAIMGFILARKADRLAKLHKEIRKRKICELYAKVLGSQEALQPVHYEEKNWCE 399
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYTAYFPPGIMT YGRVIRQP GRI+FAGTETAT WSGYM +
Sbjct: 400 EQYSGGCYTAYFPPGIMTHYGRVIRQPFGRIYFAGTETATHWSGYMEGAVEAGERTAREV 459
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY 1191
LNALG+V++KD+ +EPES+DVPA EIT TFWERNLPSVTGLLK+IGF+TSVTALW+ Y
Sbjct: 460 LNALGRVAEKDLKTQEPESKDVPAMEITHTFWERNLPSVTGLLKLIGFTTSVTALWIVAY 519
Query: 1192 KFRLLTRS 1215
KFRLL RS
Sbjct: 520 KFRLLRRS 527
>ref|XP_855548.1| PREDICTED: monoamine oxidase A [Canis familiaris].
Length = 527
Score = 326 bits (835), Expect = 4e-89
Identities = 155/179 (86%), Positives = 164/179 (91%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
LSAAKLL E+ ++VLVLEARDRVGGRTYTVRNE+ PTQNRILRLSKELG
Sbjct: 26 LSAAKLLAEHEVDVLVLEARDRVGGRTYTVRNEHVDYVDVGGAYVGPTQNRILRLSKELG 85
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVNVNE LVQYVKGK+YPFRGAFPPVWNPIAYLDYNNLWRTMD+MGK+IPADAPWE
Sbjct: 86 LETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTMDNMGKEIPADAPWE 145
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+PHAEEWDKMTMKDLIDKICWTKTA+RFASLFVNINVTSEPHEVSALWFLWYVKQCGGT
Sbjct: 146 APHAEEWDKMTMKDLIDKICWTKTARRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 204
Score = 317 bits (813), Expect = 1e-86
Identities = 152/188 (80%), Positives = 164/188 (87%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDGSLPAIMGFILARKADRLAK+HKEIRKRKICELYAKVLGSQEAL PVHYEEKNWCE
Sbjct: 340 TKPDGSLPAIMGFILARKADRLAKLHKEIRKRKICELYAKVLGSQEALQPVHYEEKNWCE 399
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYTAYFPPGIMT YGRVIRQP GRI+FAGTETAT WSGYM +
Sbjct: 400 EQYSGGCYTAYFPPGIMTHYGRVIRQPFGRIYFAGTETATHWSGYMEGAVEAGERTAREV 459
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFSTSVTALWLAVY 1191
LNALG+V++KD+ +EPES+DVPA EIT TFWERNLPSVTGLLK+IGF+TSVTALW+ Y
Sbjct: 460 LNALGRVAEKDLKTQEPESKDVPAMEITHTFWERNLPSVTGLLKLIGFTTSVTALWIVAY 519
Query: 1192 KFRLLTRS 1215
KFRLL RS
Sbjct: 520 KFRLLRRS 527
>ref|NP_001002970.1| amine oxidase [flavin-containing] B [Canis lupus familiaris].
Length = 520
Score = 283 bits (723), Expect = 4e-76
Identities = 129/179 (72%), Positives = 155/179 (86%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
++AAKLL+++G+NV+VLEARDRVGGRTYT+RN+ PTQN ILRL+KELG
Sbjct: 17 MAAAKLLHDFGLNVVVLEARDRVGGRTYTIRNQKVKYLDLGGSYVGPTQNCILRLAKELG 76
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVN E L+ +VKGKSYPFRG FPPVWNPIAYLD+NNLWRTMDDMG++IP+DAPW+
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPIAYLDHNNLWRTMDDMGREIPSDAPWK 136
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+P AEEWD MTMK+L+DKICWT++AK+ A+LFVN+ VT+E HEVSALWFLWYVKQCGGT
Sbjct: 137 APLAEEWDHMTMKELLDKICWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGT 195
Score = 251 bits (641), Expect = 1e-66
Identities = 125/189 (66%), Positives = 145/189 (76%), Gaps = 2/189 (1%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDG+ AIMGFILA KA +LA++ K+ R +K+CELYAKVLGSQEAL PVHYEEKNWCE
Sbjct: 331 TKPDGNYAAIMGFILAHKARKLARLTKDERMKKLCELYAKVLGSQEALQPVHYEEKNWCE 390
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYT YFPPGIMTQYGRV+RQPVGRI+FAGTETAT WSGYM I
Sbjct: 391 EQYSGGCYTTYFPPGIMTQYGRVLRQPVGRIYFAGTETATHWSGYMEGAVEAGERAAREI 450
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFST--SVTALWLA 1185
L+A+GK+ + +IW EPES DVPA IT TF ER+LPSV GLL++IG + S TAL +
Sbjct: 451 LHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTAIFSATALGVL 510
Query: 1186 VYKFRLLTR 1212
+K LL R
Sbjct: 511 AHKRGLLVR 519
>ref|XP_855549.1| PREDICTED: monoamine oxidase B [Canis familiaris].
Length = 520
Score = 283 bits (723), Expect = 4e-76
Identities = 129/179 (72%), Positives = 155/179 (86%)
Frame = +1
Query: 118 LSAAKLLNEYGINVLVLEARDRVGGRTYTVRNENXXXXXXXXXXXXPTQNRILRLSKELG 297
++AAKLL+++G+NV+VLEARDRVGGRTYT+RN+ PTQN ILRL+KELG
Sbjct: 17 MAAAKLLHDFGLNVVVLEARDRVGGRTYTIRNQKVKYLDLGGSYVGPTQNCILRLAKELG 76
Query: 298 LETYKVNVNECLVQYVKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWE 477
LETYKVN E L+ +VKGKSYPFRG FPPVWNPIAYLD+NNLWRTMDDMG++IP+DAPW+
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPIAYLDHNNLWRTMDDMGREIPSDAPWK 136
Query: 478 SPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQCGGT 654
+P AEEWD MTMK+L+DKICWT++AK+ A+LFVN+ VT+E HEVSALWFLWYVKQCGGT
Sbjct: 137 APLAEEWDHMTMKELLDKICWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGT 195
Score = 251 bits (641), Expect = 1e-66
Identities = 125/189 (66%), Positives = 145/189 (76%), Gaps = 2/189 (1%)
Frame = +1
Query: 652 TKPDGSLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCE 831
TKPDG+ AIMGFILA KA +LA++ K+ R +K+CELYAKVLGSQEAL PVHYEEKNWCE
Sbjct: 331 TKPDGNYAAIMGFILAHKARKLARLTKDERMKKLCELYAKVLGSQEALQPVHYEEKNWCE 390
Query: 832 EQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMXXXXXXXXXXXXXI 1011
EQYSGGCYT YFPPGIMTQYGRV+RQPVGRI+FAGTETAT WSGYM I
Sbjct: 391 EQYSGGCYTTYFPPGIMTQYGRVLRQPVGRIYFAGTETATHWSGYMEGAVEAGERAAREI 450
Query: 1012 LNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTGLLKIIGFST--SVTALWLA 1185
L+A+GK+ + +IW EPES DVPA IT TF ER+LPSV GLL++IG + S TAL +
Sbjct: 451 LHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTAIFSATALGVL 510
Query: 1186 VYKFRLLTR 1212
+K LL R
Sbjct: 511 AHKRGLLVR 519
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,270,583
Number of extensions: 1469745
Number of successful extensions: 3732
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3732
Number of HSP's successfully gapped: 8
Length of query: 498
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 391
Effective length of database: 15,307,552
Effective search space: 5985252832
Effective search space used: 5985252832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0059_C07
(1496 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 811 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 811 bits (409), Expect = 0.0
Identities = 409/409 (100%)
Strand = Plus / Minus
Query: 1070 aggatgttccagcttttgagatcacccgcaccttctgggagagaaacctgccttccgtga 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43133150 aggatgttccagcttttgagatcacccgcaccttctgggagagaaacctgccttccgtga 43133091
Query: 1130 ccgggctgcttaagatcatcggattttccacctcggtaactgccctgtggcttgccgtgt 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43133090 ccgggctgcttaagatcatcggattttccacctcggtaactgccctgtggcttgccgtgt 43133031
Query: 1190 acaaattcaggctgctgacccgatcctgaagtttcggcctcatgctttctgcttatcctt 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43133030 acaaattcaggctgctgacccgatcctgaagtttcggcctcatgctttctgcttatcctt 43132971
Query: 1250 tcccagtatcatccaaagcaaaacgttgacaaattgacacctgtgtcatcagatcacctt 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43132970 tcccagtatcatccaaagcaaaacgttgacaaattgacacctgtgtcatcagatcacctt 43132911
Query: 1310 taagtgcaccgatttaactcctcagtttaatctcagtgtatcacttccttgatttcagta 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43132910 taagtgcaccgatttaactcctcagtttaatctcagtgtatcacttccttgatttcagta 43132851
Query: 1370 agatcaagttccaccttgcgatttgtctgtaaaccaactggtgttgattggtaggaaata 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43132850 agatcaagttccaccttgcgatttgtctgtaaaccaactggtgttgattggtaggaaata 43132791
Query: 1430 accttgtgatcagtttttcatttcaagaacttaaagttgatgtactcat 1478
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43132790 accttgtgatcagtttttcatttcaagaacttaaagttgatgtactcat 43132742
Score = 278 bits (140), Expect = 8e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 210 gaacgaaaatgttgattacgtggacgttggtggggcttatgtcggaccgacccagaatag 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43179406 gaacgaaaatgttgattacgtggacgttggtggggcttatgtcggaccgacccagaatag 43179347
Query: 270 gatcttaaggttatctaaggaactgggtttagaaacttacaaagtgaatgtaaatgagtg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43179346 gatcttaaggttatctaaggaactgggtttagaaacttacaaagtgaatgtaaatgagtg 43179287
Query: 330 tctcgttcagtatgtcaagg 349
||||||||||||||||||||
Sbjct: 43179286 tctcgttcagtatgtcaagg 43179267
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 893 gaagggtgatccgccagcccgtaggcaggatattctttgctggcaccgagactgccacac 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43134266 gaagggtgatccgccagcccgtaggcaggatattctttgctggcaccgagactgccacac 43134207
Query: 953 aatggagcggttacatggaaggagcagtagaagccggcgaacgggcggctagagag 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43134206 aatggagcggttacatggaaggagcagtagaagccggcgaacgggcggctagagag 43134151
Score = 222 bits (112), Expect = 4e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 1 cccactcctatccccacgccccgggagagcctcggccagagcatggagcgtcaggagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43208694 cccactcctatccccacgccccgggagagcctcggccagagcatggagcgtcaggagaag 43208635
Query: 61 gcgaacaacgcgggccacatggtcgacgtagtcgtggtaggaggcggcatctcagg 116
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 43208634 gcgaacaacgcgggccacatggtcgacgtagtcgtgataggaggcggcatctcagg 43208579
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 546 gactgctaaacggtttgcatctctctttgtaaatatcaatgtgacctccgaaccccacga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43155057 gactgctaaacggtttgcatctctctttgtaaatatcaatgtgacctccgaaccccacga 43154998
Query: 606 agtgtctgccctgtggtttttgtggtatgtgaagcagtgtggaggcacca 655
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43154997 agtgtctgccctgtggtttttgtggtatgtgaagcagtgtggaggcacca 43154948
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 347 aggggaaatcttatccatttcggggtgccttccctccagtctggaatcccattgcctatc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43161211 aggggaaatcttatccatttcggggtgccttccctccagtctggaatcccattgcctatc 43161152
Query: 407 tggattacaacaacctgtggcggacaatggatgacatgggaaagaag 453
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43161151 tggattacaacaacctgtggcggacaatggatgacatgggaaagaag 43161105
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 799 cccgtgcactatgaagagaagaactggtgtgaggagcagtactcggggggctgctacact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43138092 cccgtgcactatgaagagaagaactggtgtgaggagcagtactcggggggctgctacact 43138033
Query: 859 gcctacttcccccctgggatcatgactcagtatggaagg 897
|||||||||||||||||||||||||||||||||||||||
Sbjct: 43138032 gcctacttcccccctgggatcatgactcagtatggaagg 43137994
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 114 aggattatctgctgccaaactcttaaatgaatatggaattaatgttttggttttagaagc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43189970 aggattatctgctgccaaactcttaaatgaatatggaattaatgttttggttttagaagc 43189911
Query: 174 ccgggacagagttggaggaagaacatacacagtgagg 210
|||||||||||||||||||||||||||||||||||||
Sbjct: 43189910 ccgggacagagttggaggaagaacatacacagtgagg 43189874
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 452 agattccagctgatgcaccatgggagtctccgcatgcagaggaatgggataagatgacca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43160070 agattccagctgatgcaccatgggagtctccgcatgcagaggaatgggataagatgacca 43160011
Query: 512 tgaaagatctcatcgataaaatctgttggacaaag 546
|||||||||||||||||||||||||||||||||||
Sbjct: 43160010 tgaaagatctcatcgataaaatctgttggacaaag 43159976
Score = 165 bits (83), Expect = 9e-38
Identities = 95/99 (95%)
Strand = Plus / Minus
Query: 799 cccgtgcactatgaagagaagaactggtgtgaggagcagtactcggggggctgctacact 858
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 43362956 cccgtgcactatgaagagaagaactggtgcgaggagcagtactcggcgggctgctacacg 43362897
Query: 859 gcctacttcccccctgggatcatgactcagtatggaagg 897
||||||||||||||||||||||||||||||||||||||
Sbjct: 43362896 acctacttcccccctgggatcatgactcagtatggaagg 43362858
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1007 agatcttgaatgctttggggaaggtgtcaaagaaagacatatggcttcgagaacctgaat 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43133524 agatcttgaatgctttggggaaggtgtcaaagaaagacatatggcttcgagaacctgaat 43133465
Query: 1067 cagagg 1072
||||||
Sbjct: 43133464 cagagg 43133459
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 739 agaaagcggaaaatctgtgagctctacgccaaagtgctaggatctcaagaagctttacat 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43139853 agaaagcggaaaatctgtgagctctacgccaaagtgctaggatctcaagaagctttacat 43139794
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 686 gcttcatccttgctcgaaaagctgaccgccttgctaaggttcataaagaaataag 740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43144967 gcttcatccttgctcgaaaagctgaccgccttgctaaggttcataaagaaataag 43144913
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 651 caccaagccagatggatcgctgcccgccatcatggg 686
||||||||||||||||||||||||||||||||||||
Sbjct: 43149426 caccaagccagatggatcgctgcccgccatcatggg 43149391
Score = 60.0 bits (30), Expect = 4e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 626 tgtggtatgtgaagcagtgtggaggcacca 655
||||||||||||||||||||||||||||||
Sbjct: 43379239 tgtggtatgtgaagcagtgtggaggcacca 43379210
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,839,841
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 15
Length of query: 1496
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1475
Effective length of database: 2,808,413,156
Effective search space: 4142409405100
Effective search space used: 4142409405100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)