Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0093_E11
(1562 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 347 8e-96
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 71 1e-12
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 64 3e-10
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 59 1e-08
Alignment gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l... 51 2e-06
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 347 bits (891), Expect = 8e-96
Identities = 214/483 (44%), Positives = 270/483 (55%), Gaps = 27/483 (5%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSL+LSCV SGF FS + WVR P
Sbjct: 1 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLKLSCVASGFIFSKYIVNWVRLVP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTR--- 417
GKGLEWLA+I + G+T YADS KGRFTISRDNSQNTAYLQMNSLR EDTA YYC R
Sbjct: 61 GKGLEWLASIWST-GSTHYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTALYYCAREVC 119
Query: 418 --------DWSYGIDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDFF 570
D YG+DLWGPG T+P ++PL + +G V + CL +F
Sbjct: 120 FRYNTGCWDGYYGMDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYF 179
Query: 571 PSEPLTVTWSPSREGVIVRNFPPA-QAGGLYTMSSQLTLPVEQCPADQILKCQVQH---L 738
P EP+T+TW+ V FP Q GLY++SS +T+P + + C V H
Sbjct: 180 P-EPVTMTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPATT 237
Query: 739 SKSSQSVNV-----XXXXXXXXXXXXSLSLQPPALAD-LLLGSNASLTCTLSGLKKSEG- 897
+K + V S+ + PP D L++ +TC + + K
Sbjct: 238 TKVDKRVGTKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAE 297
Query: 898 VSFTWQPSGGKDAVQASPTRDS----CGCYSVSSILPGCADPWNKGETFSCTAAHSELKS 1065
V F+W G + V + TR Y V S+LP W KG+ F C + +L +
Sbjct: 298 VQFSWYVDGVE--VHTAETRPKEEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPA 355
Query: 1066 ALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELP 1245
+T TI+K + PQV+ LPPP+EEL+ ++ VT+TCLV GF P D+ V W GQ P
Sbjct: 356 PITRTISKAIGQSREPQVYTLPPPAEELSRSK-VTVTCLVIGFYPPDIHVEWKSNGQPEP 414
Query: 1246 RDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQKTIDRL 1425
Y + P T+ + S L VD W G+TF C V HEAL +TQK+I +
Sbjct: 415 EGNY---RTTPPQQDVDGTFFLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKT 471
Query: 1426 AGK 1434
GK
Sbjct: 472 QGK 474
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 71.2 bits (173), Expect = 1e-12
Identities = 64/222 (28%), Positives = 89/222 (40%), Gaps = 8/222 (3%)
Frame = +1
Query: 94 LFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLAT 273
L +L G +L + G V GG+ ++C G +F Y +W +Q PG+ L
Sbjct: 10 LLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGG--NFGSYYAHWYKQKPGQS-PMLVI 66
Query: 274 ISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYC-TRDWSYGIDLWGP 450
+G D G S NTA L ++ + ED A YYC + D S L+G
Sbjct: 67 YEYNKRASGIPDRFSG------SKSGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGR 120
Query: 451 GXXXXXXXXXXTSP--KIFPLTLGSSEPAG--YVVIACLVRDFFPSEPLTVTWSPSREGV 618
G +P +FP SSE G + CL+ DF+P +TVTW V
Sbjct: 121 GTRLSVLRQPKAAPTVNLFP---PSSEELGTNKATLVCLISDFYPG-AVTVTWKAGGTTV 176
Query: 619 ---IVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQH 735
+ P Q+ Y SS L L + CQV H
Sbjct: 177 TQGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTH 218
Score = 63.2 bits (152), Expect = 4e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Frame = +1
Query: 1111 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 1290
P V+L PP SEEL N+ TL CL+ F P V V W GG + + E+ Q
Sbjct: 134 PTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGV----ETTKPSKQ 188
Query: 1291 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQKTI 1416
+ YA +S L + A DWK F+C V HE +KT+
Sbjct: 189 SNNKYAASSYLALSASDWKSSSGFTCQVTHEG---TIVEKTV 227
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 63.5 bits (153), Expect = 3e-10
Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 22/224 (9%)
Frame = +1
Query: 811 LQPPALADLLLGSNASLTCTLS-GLKKSEGVSFTWQPSGG---KDAVQASPTRDSCGCYS 978
+Q PA++ + LG +LTC S G S +Q + G + + ++ +R +
Sbjct: 23 IQEPAMS-VSLGGTVTLTCAFSSGSVTSSDYPGWFQQTPGQPPRTVIYSTNSRPTGVPSR 81
Query: 979 VSSILPGCADPWNKGETFSCTAAHSE---------LKSALTAT---------ITKPKVNT 1104
S + G NK T + T A +E KS T T + +PK
Sbjct: 82 FSGAISG-----NKA-TLTITGAQAEDEADYFCALRKSGGTVTFGGGTHVTVLGQPKA-- 133
Query: 1105 FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEP 1284
P V+L PP SEEL N+ TL CL+ F P V V W GG + + E+
Sbjct: 134 -APTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGV----ETTKPS 187
Query: 1285 GQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQKTI 1416
Q+ YA +S L + A DWK F+C V HE +KT+
Sbjct: 188 KQSNNKYAASSYLALSASDWKSSSGFTCQVTHEG---TIVEKTV 228
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 58.5 bits (140), Expect = 1e-08
Identities = 36/91 (39%), Positives = 46/91 (50%)
Frame = +1
Query: 1111 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 1290
P V L PP EEL+ N+ TL CL+ F P V V W GG + + V S P Q
Sbjct: 112 PTVTLFPPSPEELSTNK-ATLVCLISDFYPGAVTVTWKAGGTTITQG---VDTSQPSK-Q 166
Query: 1291 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1383
+ YA +S L + A DWK F+C V H+
Sbjct: 167 SNNKYAASSYLALSASDWKSSSGFTCQVTHQ 197
>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
Length = 179
Score = 51.2 bits (121), Expect = 2e-06
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 6/181 (3%)
Frame = +1
Query: 94 LFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLAT 273
L +L G KL + G V GG+ ++C G +F Y +W +Q PG+ L
Sbjct: 10 LLSLCTGYVASSKLTQPPGVSVSLGGTASIACQGD--NFGSYYAHWYQQKPGQS-PMLVI 66
Query: 274 ISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYC-TRDWSY--GIDLW 444
+G D G S NTA L ++ + ED A YYC + D SY D
Sbjct: 67 YEYNKRASGIPDRFSG------SKSGNTATLTISGAQAEDEADYYCQSSDDSYTPHSDTG 120
Query: 445 GPGXXXXXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSP---SREG 615
G G T P++ L L E G CL+ S P+ + SP S +G
Sbjct: 121 GGG------RGTQTPPQLGHLLLQHQEACGQSKNRCLLGSTDLSSPIFPSPSPQAGSAQG 174
Query: 616 V 618
V
Sbjct: 175 V 175
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,344,009
Number of extensions: 1425325
Number of successful extensions: 7270
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7154
Number of HSP's successfully gapped: 6
Length of query: 520
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 417
Effective length of database: 8,779,541
Effective search space: 3661068597
Effective search space used: 3661068597
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0093_E11
(1562 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848321.1| PREDICTED: similar to Ig heavy chain V-III regi... 178 1e-44
Alignment gi|XP_848845.1| PREDICTED: similar to Ig heavy chain V-III regi... 177 3e-44
Alignment gi|XP_848979.1| PREDICTED: similar to Ig heavy chain V-III regi... 176 6e-44
Alignment gi|XP_849242.1| PREDICTED: similar to Ig heavy chain V-III regi... 175 9e-44
Alignment gi|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III regi... 175 9e-44
Alignment gi|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III regi... 174 2e-43
Alignment gi|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III regi... 174 2e-43
Alignment gi|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III regi... 173 4e-43
Alignment gi|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III regi... 172 8e-43
Alignment gi|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III regi... 171 1e-42
>ref|XP_848321.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 296
Score = 178 bits (451), Expect = 1e-44
Identities = 85/127 (66%), Positives = 101/127 (79%)
Frame = +1
Query: 40 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGT 219
IR E+R ME L+WV L A L+GVQGE +LVESGG +V+PGGSLRLSCV SGF FS
Sbjct: 138 IRTEYRQLTMESVLSWVFLVATLKGVQGEVQLVESGGDMVKPGGSLRLSCVASGFTFSSY 197
Query: 220 YIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTA 399
Y+YW RQAPGKGL+W++ I+ G +T YAD+ KGRFTISRDN++NT YLQMNSLR EDTA
Sbjct: 198 YMYWARQAPGKGLQWVSHINKDGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 257
Query: 400 RYYCTRD 420
YYC +D
Sbjct: 258 VYYCAKD 264
>ref|XP_848845.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 159
Score = 177 bits (448), Expect = 3e-44
Identities = 84/124 (67%), Positives = 99/124 (79%)
Frame = +1
Query: 49 EHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIY 228
+ R ME L WV L A+L+GVQGE +LVESGG LV+PGGSLRLSCV SGF FS Y+
Sbjct: 21 QQRQTTMECVLGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYYMS 80
Query: 229 WVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYY 408
W+RQAPGKGL+W+A IS GG+TGYAD+ KGRFTISR+N++N YLQMNSLR EDTA YY
Sbjct: 81 WIRQAPGKGLQWVADISDSGGSTGYADAVKGRFTISRENAKNKLYLQMNSLRAEDTAVYY 140
Query: 409 CTRD 420
C +D
Sbjct: 141 CAKD 144
>ref|XP_848979.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 168
Score = 176 bits (446), Expect = 6e-44
Identities = 86/128 (67%), Positives = 101/128 (78%)
Frame = +1
Query: 37 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSG 216
+I+ E R ME L+W+ L A+L+GVQGE +LVESGG LV+PGGSLRLSCV SGF FS
Sbjct: 7 MIKTEDRHLTMETVLSWIFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSS 66
Query: 217 TYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDT 396
+ WVRQAPGKGL+WL IS G +TGYAD+ KGRFTISRDN++NT YLQMNSLR EDT
Sbjct: 67 NDMDWVRQAPGKGLQWLTRISNDGRSTGYADAVKGRFTISRDNAKNTLYLQMNSLRAEDT 126
Query: 397 ARYYCTRD 420
A YYC +D
Sbjct: 127 AVYYCAKD 134
>ref|XP_849242.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 121
Score = 175 bits (444), Expect = 9e-44
Identities = 84/118 (71%), Positives = 97/118 (82%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
ME WV L A+L+GVQGE +LVESGG LV+PGGSLRLSCV SGF FS Y+YWVRQAP
Sbjct: 1 MESVFCWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYYMYWVRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
GKGL+W+A IS+ G +T YAD+ KGRFTISRDN++NT YLQMNSLR EDTA YYC +D
Sbjct: 61 GKGLQWVARISSDGSSTYYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAMYYCAKD 118
>ref|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 250
Score = 175 bits (444), Expect = 9e-44
Identities = 86/128 (67%), Positives = 100/128 (78%)
Frame = +1
Query: 37 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSG 216
+IR + R ME L+WV L A+LQGVQGE +LVESGG LV+PGGSLRLSCV SGF FS
Sbjct: 108 LIRTQQRQTTMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSN 167
Query: 217 TYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDT 396
+ WVRQAPGKGL+W+A IS G +T Y D+ KGRFTISRDN++NT YLQMNSLR EDT
Sbjct: 168 YDMSWVRQAPGKGLQWVAAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAEDT 227
Query: 397 ARYYCTRD 420
A YYC +D
Sbjct: 228 AVYYCAKD 235
Score = 124 bits (310), Expect(2) = 2e-28
Identities = 60/92 (65%), Positives = 70/92 (76%)
Frame = +1
Query: 145 GGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGR 324
G LV+PGGSLRLSCV SGF FS + WV QAPGKGL+W+A IS+ G +T Y D+ KGR
Sbjct: 10 GEDLVKPGGSLRLSCVTSGFTFSRYAMSWVGQAPGKGLQWVAAISSSGSSTYYVDAVKGR 69
Query: 325 FTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
FTIS DN++N YLQMNSLR ED A YYC +D
Sbjct: 70 FTISIDNAKNMVYLQMNSLRAEDIAVYYCGKD 101
Score = 21.6 bits (44), Expect(2) = 2e-28
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 122 VRRSWWSLEEAWCSLGG 172
V+ SWWSL E GG
Sbjct: 2 VKCSWWSLGEDLVKPGG 18
>ref|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 162
Score = 174 bits (442), Expect = 2e-43
Identities = 86/127 (67%), Positives = 99/127 (77%)
Frame = +1
Query: 40 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGT 219
IR E+R M+ L WV L A+L+GVQGE +LVESGG LV+PGGSLRLSCV SGF FS
Sbjct: 4 IRTEYRQLTMKLVLGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSY 63
Query: 220 YIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTA 399
+ WVRQAPGKGL+W+A I G +T YAD+ KGRFTISRDN++NT YLQMNSLR EDTA
Sbjct: 64 NMGWVRQAPGKGLQWVAWIYDSGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 123
Query: 400 RYYCTRD 420
YYC RD
Sbjct: 124 VYYCARD 130
>ref|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 267
Score = 174 bits (442), Expect = 2e-43
Identities = 83/123 (67%), Positives = 99/123 (80%)
Frame = +1
Query: 49 EHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIY 228
EHR ME L+WV L +L+GVQGE +LVESGG LV+PGGSLRLSCV SGF FS ++
Sbjct: 104 EHRQRTMESALSWVFLVTILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYHMS 163
Query: 229 WVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYY 408
WVRQAPGKGL+W+A I++ G +T YAD+ KGRFTISRDN++NT YLQMNSLR EDTA YY
Sbjct: 164 WVRQAPGKGLQWVAYINSGGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYY 223
Query: 409 CTR 417
C +
Sbjct: 224 CAK 226
>ref|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 315
Score = 173 bits (439), Expect = 4e-43
Identities = 87/138 (63%), Positives = 103/138 (74%)
Frame = +1
Query: 34 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFS 213
SVIR +HR ME L WV L A+LQGVQGE +LVESGG L +PGGSLRLSCV SG FS
Sbjct: 156 SVIRTQHRQITMESVLGWVFLVAILQGVQGEVQLVESGGDLAKPGGSLRLSCVASGLTFS 215
Query: 214 GTYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIED 393
+ WVRQAPGKGL+W+ IS G +T Y D+ KGRFTISRDN++NT YLQMNSLR ED
Sbjct: 216 SYSMSWVRQAPGKGLQWVTAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAED 275
Query: 394 TARYYCTRDWSYGIDLWG 447
TA YYC ++ + I++ G
Sbjct: 276 TAVYYCAQE-QFQIEVMG 292
>ref|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 239
Score = 172 bits (436), Expect = 8e-43
Identities = 86/129 (66%), Positives = 100/129 (77%)
Frame = +1
Query: 34 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFS 213
S I EHR M L+WV L A+++GVQGE +LVESGG LV+PGGSLRLSCV SGF FS
Sbjct: 57 SGIWTEHRQLTMTSVLSWVFLAAIVKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 116
Query: 214 GTYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIED 393
+YWVRQAPGKGLEW+A I G TT YA++ KGRFTISRDN++N AYLQMNSLR ED
Sbjct: 117 NYEMYWVRQAPGKGLEWVARIYESGSTTYYAEAVKGRFTISRDNAKNMAYLQMNSLRAED 176
Query: 394 TARYYCTRD 420
TA YYC ++
Sbjct: 177 TAVYYCAQE 185
>ref|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 142
Score = 171 bits (434), Expect = 1e-42
Identities = 86/129 (66%), Positives = 102/129 (79%)
Frame = +1
Query: 34 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFS 213
S IR E+R ME + WV L A+L+GVQGE +LVESGG LV+PGGSLRLSCV SGF FS
Sbjct: 3 SGIRVENRRLNMESFVGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 62
Query: 214 GTYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIED 393
+ WVRQAPGKGL+W+A I++ G +T YAD+ KGRFTISRDN++NT YLQMNSLR ED
Sbjct: 63 SYAMSWVRQAPGKGLQWVAYINSGGSSTYYADAVKGRFTISRDNARNTLYLQMNSLRSED 122
Query: 394 TARYYCTRD 420
TA YYC +D
Sbjct: 123 TAVYYCPKD 131
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,024,811
Number of extensions: 2197732
Number of successful extensions: 11704
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 11347
Number of HSP's successfully gapped: 211
Length of query: 520
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 413
Effective length of database: 15,307,552
Effective search space: 6322018976
Effective search space used: 6322018976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0093_E11
(1562 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 412 e-115
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 410 e-114
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 410 e-114
Alignment gi|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361... 111 1e-24
Alignment gi|XP_923669.1| PREDICTED: putative V-set and immunoglobulin do... 106 6e-23
Alignment gi|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chai... 105 1e-22
Alignment gi|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002... 99 9e-21
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 88 2e-17
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 412 bits (1058), Expect = e-115
Identities = 207/341 (60%), Positives = 247/341 (72%), Gaps = 7/341 (2%)
Frame = +1
Query: 487 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 663
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 10 NPTIYPLTLPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69
Query: 664 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 825
MSSQLTLP +CP + +KC VQH S + Q +NV SLSLQ PA
Sbjct: 70 MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQPSLSLQRPA 129
Query: 826 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 1005
L DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSVSS+LPGCA
Sbjct: 130 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 189
Query: 1006 DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 1185
+ WN G +F CT H E LT TI K VNTF PQVHLLPPPSEELALNELV+LTCLV
Sbjct: 190 ERWNSGASFKCTVTHPE-SDTLTGTIAKITVNTFPPQVHLLPPPSEELALNELVSLTCLV 248
Query: 1186 RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1365
R F+PK+VLVRWL G +EL + YLV+E L EPG+ TY VTSVLRV AE WKQGD +S
Sbjct: 249 RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAEIWKQGDQYS 308
Query: 1366 CMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVMAEAEGICY 1488
CMVGHEALP+ FTQKTIDRL+GKPT+V+VSV+M+E +GICY
Sbjct: 309 CMVGHEALPMNFTQKTIDRLSGKPTNVSVSVIMSEGDGICY 349
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 410 bits (1053), Expect = e-114
Identities = 205/341 (60%), Positives = 246/341 (72%), Gaps = 7/341 (2%)
Frame = +1
Query: 487 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 663
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 15 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74
Query: 664 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 825
MSSQLTLP +CP + +KC VQH S Q ++V SLSLQ PA
Sbjct: 75 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 134
Query: 826 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 1005
L DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSVSS+LPGCA
Sbjct: 135 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 194
Query: 1006 DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 1185
+ WN G +F CT H E LT TI K VNTF PQVHLLPPPSEELALNEL++LTCLV
Sbjct: 195 ERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELALNELLSLTCLV 253
Query: 1186 RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1365
R F+PK+VLVRWL G +EL + YLV+E L EPG+ TY VTSVLRV AE WKQGD +S
Sbjct: 254 RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYS 313
Query: 1366 CMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVMAEAEGICY 1488
CMVGHEALP+ FTQKTIDRL+GKPT+V+VSV+M+E +GICY
Sbjct: 314 CMVGHEALPMNFTQKTIDRLSGKPTNVSVSVIMSEGDGICY 354
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 410 bits (1053), Expect = e-114
Identities = 205/341 (60%), Positives = 246/341 (72%), Gaps = 7/341 (2%)
Frame = +1
Query: 487 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 663
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 74 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133
Query: 664 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 825
MSSQLTLP +CP + +KC VQH S Q ++V SLSLQ PA
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 193
Query: 826 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 1005
L DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSVSS+LPGCA
Sbjct: 194 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 253
Query: 1006 DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 1185
+ WN G +F CT H E LT TI K VNTF PQVHLLPPPSEELALNEL++LTCLV
Sbjct: 254 ERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELALNELLSLTCLV 312
Query: 1186 RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1365
R F+PK+VLVRWL G +EL + YLV+E L EPG+ TY VTSVLRV AE WKQGD +S
Sbjct: 313 RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYS 372
Query: 1366 CMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVMAEAEGICY 1488
CMVGHEALP+ FTQKTIDRL+GKPT+V+VSV+M+E +GICY
Sbjct: 373 CMVGHEALPMNFTQKTIDRLSGKPTNVSVSVIMSEGDGICY 413
Score = 103 bits (256), Expect = 5e-22
Identities = 51/76 (67%), Positives = 55/76 (72%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
M+ LNWV L LL G+Q E KLVESGGGLVQPGGSLRLSC SGF FS Y+ WVRQ P
Sbjct: 1 MKLWLNWVFLLTLLHGIQCEVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPP 60
Query: 247 GKGLEWLATISTRGGT 294
GK LEW+A S R T
Sbjct: 61 GKRLEWIAAKSARNPT 76
>ref|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361 [Mus musculus].
Length = 411
Score = 111 bits (278), Expect = 1e-24
Identities = 55/106 (51%), Positives = 72/106 (67%)
Frame = +1
Query: 103 LLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLATIST 282
LL G+ + +L ESG GLV P SL ++C SGF +G + WVRQ PGKGLEWL I
Sbjct: 253 LLPGILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMI-W 311
Query: 283 RGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
G+T Y + K R +IS+DNS++ +L+MNSL+ +DTARYYC RD
Sbjct: 312 GDGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCARD 357
Score = 75.1 bits (183), Expect = 1e-13
Identities = 39/94 (41%), Positives = 58/94 (61%)
Frame = +1
Query: 115 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLATISTRGGT 294
V + ++ ESG LVQP +L L+C SGF S ++W R+ P KGLEWL I + GG+
Sbjct: 17 VLSQVQMKESGPDLVQPSQTLSLTCTVSGFSLSSYGVHWFRKPPRKGLEWLGGIWS-GGS 75
Query: 295 TGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDT 396
Y + R ++SRD S++ + +M+SL+ EDT
Sbjct: 76 IYYNPALSSRLSVSRDISKSQVFFKMSSLQSEDT 109
>ref|XP_923669.1| PREDICTED: putative V-set and immunoglobulin domain-containing
protein 6-like [Mus musculus].
Length = 208
Score = 106 bits (264), Expect = 6e-23
Identities = 53/112 (47%), Positives = 72/112 (64%)
Frame = +1
Query: 85 WVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEW 264
++ L A V + +L ESG GLV P SL ++C SGF + ++WVRQ PGKGLEW
Sbjct: 7 FLCLVAFPSCVLSQVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEW 66
Query: 265 LATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
L I GG+T Y + R +IS+DNS++ +L+MNSL+ +DTA YYC RD
Sbjct: 67 LGVI-WAGGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARD 117
>ref|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].
Length = 124
Score = 105 bits (261), Expect = 1e-22
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +1
Query: 82 NWVVLFAL--LQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKG 255
+W+ LF L GV E +L +SG LV+PG S+++SC SG+ F+ Y++WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLHQSGPELVKPGASVKMSCKASGYTFTNYYMHWVKQSHGKS 63
Query: 256 LEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTR 417
+EW+ I G T Y KG+ T++ D S +TAY+++ SL ED+A YYC R
Sbjct: 64 IEWIGYIYPNNGDTSYNQKFKGKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR 117
>ref|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002 [Mus musculus].
Length = 302
Score = 99.0 bits (245), Expect = 9e-21
Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +1
Query: 82 NWVVLFAL--LQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKG 255
+W+ LF L GV E +L +SG L++PG S+++SC SG+ F+ ++WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLQQSGPELLKPGASVKISCKASGYTFTDYTMHWVKQSHGKS 63
Query: 256 LEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTR 417
LEW+ I+ G T Y + K + T++ D S +TAY+++ SL ED+A YYC R
Sbjct: 64 LEWIGGINPNYGGTSYNEKFKDKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR 117
Score = 81.3 bits (199), Expect = 2e-15
Identities = 40/102 (39%), Positives = 64/102 (62%)
Frame = +1
Query: 112 GVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLATISTRGG 291
GV E L +S +V+ G S+++SC SG+ F+G Y++WV+Q+ GK L+ + I+ G
Sbjct: 179 GVHSEVHLQQSLPKVVKAGPSVKISCKASGYSFTGYYMHWVKQSHGKILQRVEYINPYNG 238
Query: 292 TTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTR 417
TGY + K + T++ D S +TAY+ ++SL ED+ Y C R
Sbjct: 239 GTGYIEKFKDKATLTADKSFSTAYMHLSSLTSEDSEVYSCAR 280
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +1
Query: 91 VLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLA 270
V + V E +L +SG LV+PG S+++SC SG+ F+G Y++WV+Q+ GK LEW+
Sbjct: 112 VYYCARHSVNSEVQLQQSGPELVKPGASVKISCKASGYSFTGYYMHWVKQSHGKSLEWIG 171
Query: 271 TISTRGG 291
I+ G
Sbjct: 172 EINPYNG 178
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 88.2 bits (217), Expect = 2e-17
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Frame = +1
Query: 103 LLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLATIST 282
LL G + +L +SG LV+PG S+++SC SG+ F+ +++WV+Q PG+GLEW+ I
Sbjct: 4 LLAGFNSQVQLQQSGAELVRPGASVKMSCKASGYTFTSYWMHWVKQRPGQGLEWIGAIDP 63
Query: 283 RGGTTGYAD---SAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYC 411
T Y ++ + T++ D S + AY+Q +SL ED+ YYC
Sbjct: 64 SDSETIYNQKFKDSRDKATLTVDKSSSIAYMQFSSLTSEDSVVYYC 109
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,297,325
Number of extensions: 1773367
Number of successful extensions: 8968
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8824
Number of HSP's successfully gapped: 12
Length of query: 520
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 414
Effective length of database: 12,433,743
Effective search space: 5147569602
Effective search space used: 5147569602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0093_E11
(1562 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-... 174 2e-43
Alignment gi|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-... 172 8e-43
Alignment gi|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-... 171 2e-42
Alignment gi|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941... 171 2e-42
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 171 2e-42
Alignment gi|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-... 170 3e-42
Alignment gi|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-... 168 1e-41
Alignment gi|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917... 162 6e-40
Alignment gi|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797... 162 6e-40
Alignment gi|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-... 160 2e-39
>ref|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 231
Score = 174 bits (441), Expect = 2e-43
Identities = 87/125 (69%), Positives = 102/125 (81%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV+L A+L+ VQ E +LVESGGGLVQPGGSLRLSC SGF FS ++WVRQAP
Sbjct: 1 MEFWLSWVLLVAILKDVQCEVQLVESGGGLVQPGGSLRLSCSASGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRDWS 426
GKGLE+++ IS+ GG+T YADS KGRFTISRDNS+NT YLQM+SLR EDTA YYC +D
Sbjct: 61 GKGLEYVSAISSNGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCVKDTV 120
Query: 427 YGIDL 441
GI L
Sbjct: 121 RGIVL 125
>ref|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 172 bits (436), Expect = 8e-43
Identities = 85/118 (72%), Positives = 97/118 (82%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV L A+L+GVQ E +LV+SGGGLVQPGGSLRLSC GSGF FS ++WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVQPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
GKGLEW++ I T GGT YADS KGRFTISRDN++N+ YLQMNSLR ED A YYC RD
Sbjct: 61 GKGLEWVSAIGTGGGTY-YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 186
Score = 171 bits (433), Expect = 2e-42
Identities = 81/118 (68%), Positives = 96/118 (81%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV L A+++GVQ + +LVESGGGLV+PGGSLRLSC SGF FS Y+ W+RQAP
Sbjct: 1 MEFGLSWVFLVAIIKGVQCQVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
GKGLEW++ IS+ T YADS KGRFTISRDN++N+ YLQMNSLR EDTA YYC RD
Sbjct: 61 GKGLEWVSYISSSSSYTNYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARD 118
>ref|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].
Length = 297
Score = 171 bits (432), Expect = 2e-42
Identities = 85/123 (69%), Positives = 98/123 (79%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV L A+L+GVQ E +LV+SGGGLV PGGSLRLSC GSGF FS ++WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRDWS 426
GKGLEW++ I T GGT YADS KGRFTISRDN++N+ YLQMNSLR ED A YYC RD
Sbjct: 61 GKGLEWVSAIGTGGGTY-YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARDTV 119
Query: 427 YGI 435
G+
Sbjct: 120 RGM 122
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 171 bits (432), Expect = 2e-42
Identities = 83/118 (70%), Positives = 96/118 (81%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV L A+L+GVQ E +LVESGG +VQPGGSLRLSC SGF F ++WVRQAP
Sbjct: 1 MEFGLSWVFLVAILKGVQCEVQLVESGGVVVQPGGSLRLSCAASGFTFDDYAMHWVRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
GKGLEW++ IS GG+T YADS KGRFTISRDNS+N+ YLQMNSLR EDTA YYC +D
Sbjct: 61 GKGLEWVSLISWDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRAEDTALYYCAKD 118
Score = 87.4 bits (215), Expect = 3e-17
Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = +1
Query: 163 PGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLATISTRGG--TTGYADSAKGRFTIS 336
PG S + SGF FS +++W+RQA GKGLEW+ I T+ TT A S KGRFTIS
Sbjct: 123 PGESWQGEGYSSGFTFSDFWMHWIRQASGKGLEWVGRIRTKRNSYTTECAASVKGRFTIS 182
Query: 337 RDNSQNTAYLQMNSLRIEDTARYY 408
RD+S+NT Y+QMN+L+ + TA YY
Sbjct: 183 RDDSKNTLYMQMNTLKTKYTAIYY 206
Score = 58.5 bits (140), Expect = 2e-08
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = +1
Query: 217 TYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDT 396
T IY+ +PG+GLEW+ I T G Y GRF S D S + AYLQ++SL+ EDT
Sbjct: 202 TAIYY---SPGQGLEWMGWIITYTGNPMYTHGFTGRFVFSMDTSVSMAYLQISSLKAEDT 258
Query: 397 ARYYCTRD 420
A Y RD
Sbjct: 259 AVYDSMRD 266
>ref|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 170 bits (431), Expect = 3e-42
Identities = 84/118 (71%), Positives = 96/118 (81%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV L A+L+GVQ E +LV+SGGGLV PGGSLRLSC GSGF FS ++WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
GKGLEW++ I T GGT YADS KGRFTISRDN++N+ YLQMNSLR ED A YYC RD
Sbjct: 61 GKGLEWVSAIGTGGGTY-YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 173
Score = 168 bits (426), Expect = 1e-41
Identities = 84/118 (71%), Positives = 93/118 (78%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV L ALL+GVQ + +LVESGGG+VQPG SLRLSC SGF FS ++WVRQAP
Sbjct: 1 MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
GKGLEW+A IS G YADS KGRFTISRDNS+NT YLQMNSLR DTA YYC RD
Sbjct: 61 GKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAGDTAVYYCARD 118
>ref|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].
Length = 295
Score = 162 bits (411), Expect = 6e-40
Identities = 81/126 (64%), Positives = 97/126 (76%)
Frame = +1
Query: 40 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGT 219
+ K + E L+W+ L A+L+GVQ E +LVESGGGLV+PGGSLRLSC SGF FS
Sbjct: 13 LHKSEKRTTKESWLSWLFLVAILKGVQCEVQLVESGGGLVKPGGSLRLSCAASGFTFSDY 72
Query: 220 YIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTA 399
Y+ WVRQAPGKGLEW+++IS+ T YADS KGRFTISRDN++N+ YLQMNSLR EDTA
Sbjct: 73 YMNWVRQAPGKGLEWVSSISS-SSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTA 131
Query: 400 RYYCTR 417
YYC R
Sbjct: 132 VYYCAR 137
Score = 81.3 bits (199), Expect = 2e-15
Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Frame = +1
Query: 115 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFS--GTYIYWVRQAPGKGLEWLATISTRG 288
V + L ESG LV+P +L L+C SGF S G + W+RQ PGK LEWLA I
Sbjct: 164 VLSQVTLKESGPALVKPTQTLTLTCTFSGFSLSTSGMRVSWIRQPPGKALEWLARIDWDD 223
Query: 289 GTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTR 417
Y+ S K R TIS+D S+N L M ++ DTA YYC R
Sbjct: 224 DKF-YSTSLKTRLTISKDTSKNQVVLTMTNMDPVDTATYYCAR 265
>ref|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].
Length = 309
Score = 162 bits (411), Expect = 6e-40
Identities = 87/141 (61%), Positives = 101/141 (71%), Gaps = 4/141 (2%)
Frame = +1
Query: 10 RSPAPGS----RSVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSL 177
RSP+ G SVIR EH EF L+WV L A+L+ VQ E++LVESGGGLVQPGGSL
Sbjct: 108 RSPSLGIPKCLHSVIRTEHTGLTREFVLSWVFLVAILKCVQCEDQLVESGGGLVQPGGSL 167
Query: 178 RLSCVGSGFDFSGTYIYWVRQAPGKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNT 357
R SC SGF FS ++WVR+APGKG EW++ I T GG T YADS GRFTISRDN++ +
Sbjct: 168 RPSCAASGFAFSSYVLHWVRRAPGKGPEWVSAIGT-GGDTYYADSVMGRFTISRDNAKKS 226
Query: 358 AYLQMNSLRIEDTARYYCTRD 420
YLQMNSL ED A YYC RD
Sbjct: 227 LYLQMNSLIAEDMAVYYCARD 247
>ref|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 148
Score = 160 bits (406), Expect = 2e-39
Identities = 78/118 (66%), Positives = 90/118 (76%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAP 246
MEF L+WV L A+LQGV E +LVESG GL QPGG L+LS SGF Y+ W+ QAP
Sbjct: 1 MEFELSWVFLVAILQGVHCEVQLVESGRGLAQPGGYLKLSGAASGFTVGSWYMSWIHQAP 60
Query: 247 GKGLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
GKGLEW++ IS+ G +T YADS KGRFTIS DNS+NT YLQMNSLR+EDTA YYC RD
Sbjct: 61 GKGLEWVSYISSSGCSTNYADSVKGRFTISTDNSKNTLYLQMNSLRVEDTAVYYCARD 118
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,438,516
Number of extensions: 2147319
Number of successful extensions: 11298
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 11129
Number of HSP's successfully gapped: 23
Length of query: 520
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,770,016
Effective search space: 6100016608
Effective search space used: 6100016608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0093_E11
(1562 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 601 e-172
Alignment gi|XP_002696847.1| PREDICTED: IgM [Bos taurus]. 108 1e-23
Alignment gi|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos... 99 1e-20
Alignment gi|XP_002696848.1| PREDICTED: IgM [Bos taurus]. 97 5e-20
Alignment gi|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus]. 85 2e-16
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 66 1e-10
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 60 5e-09
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 56 8e-08
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 54 5e-07
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 54 5e-07
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 601 bits (1549), Expect = e-172
Identities = 309/485 (63%), Positives = 355/485 (73%), Gaps = 17/485 (3%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF S I WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKAL 64
Query: 259 EWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTR------- 417
E LA I T GG T Y + K R I++D S++ L ++S+ EDTA YYC +
Sbjct: 65 ECLACI-TGGGNTAYNPALKSRLNITKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCA 123
Query: 418 ---DWSYGIDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLT 588
+ +Y ID WG G TSP IFPL+LG+++PAG VVI CLV+ FFPS PL+
Sbjct: 124 CSSERNY-IDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLS 182
Query: 589 VTWSPSREGVIVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVX 768
VTW+ + + V VRNFP AG LYTMSSQLTLP CP Q + CQVQHLSK+S++V V
Sbjct: 183 VTWNQNGDSVSVRNFPAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVP 242
Query: 769 XXXXXXXXXXX-----SLSLQPPALADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKD 933
SLS+QPPAL DLLLGSNASLTCTLSGLK +EG SFTW P+GGK
Sbjct: 243 CIIQDSSSCCVPNCEPSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKT 302
Query: 934 AVQASPTRDSCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRP 1113
AVQ SP RDSCGCYSVSS+LPGCADPWN G+TFSC+ H E KS+LTATI K NTFRP
Sbjct: 303 AVQGSPKRDSCGCYSVSSVLPGCADPWNSGQTFSCSVTHPESKSSLTATIKKDLGNTFRP 362
Query: 1114 QVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQA 1293
QVHLLPPPSEELALNELVTLTCLVRGFSPK+VLVRWLQG QELPR+KYL W LPE GQ+
Sbjct: 363 QVHLLPPPSEELALNELVTLTCLVRGFSPKEVLVRWLQGNQELPREKYLTWGPLPEAGQS 422
Query: 1294 IPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVMAEA 1473
+ T+AVTSVLRVDAE WKQGDTFSCMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVM+E
Sbjct: 423 VTTFAVTSVLRVDAEVWKQGDTFSCMVGHEALPLAFTQKTIDRLAGKPTHVNVSVVMSEV 482
Query: 1474 EGICY 1488
+G+CY
Sbjct: 483 DGVCY 487
>ref|XP_002696847.1| PREDICTED: IgM [Bos taurus].
Length = 193
Score = 108 bits (270), Expect = 1e-23
Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF S + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSDNSVGWVRQAPGKAL 64
Query: 259 EWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRDWSYGID 438
EWL I + GG+TGY + K R +I++DNS++ L ++S+ EDTA YYC RD G +
Sbjct: 65 EWLGVIYS-GGSTGYNPALKSRLSITKDNSKSQVSLSLSSVTTEDTATYYCARDTVRGSE 123
Query: 439 LWGPG 453
G G
Sbjct: 124 GAGVG 128
>ref|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos taurus].
Length = 121
Score = 99.0 bits (245), Expect = 1e-20
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF S + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTISGFSLSSYAVGWVRQAPGKAL 64
Query: 259 EWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
EW+ IS+ GG+T + K R +I++DNS++ L ++S+ EDTA YYC +D
Sbjct: 65 EWVGGISS-GGSTCLNPALKSRLSITKDNSKSQVSLSVSSVTTEDTATYYCAKD 117
>ref|XP_002696848.1| PREDICTED: IgM [Bos taurus].
Length = 259
Score = 96.7 bits (239), Expect = 5e-20
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF S + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSSNGVGWVRQAPGKAL 64
Query: 259 EWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRD 420
EW+ I G T Y + K R +I++DNS++ L ++S+ EDTA YYC +D
Sbjct: 65 EWVGGID-NDGDTYYNPALKSRLSITKDNSKSQVSLSVSSVTPEDTATYYCAKD 117
>ref|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 226
Score = 84.7 bits (208), Expect = 2e-16
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Frame = +1
Query: 85 WVVLFALLQGVQG---EEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTY-IYWVRQAPGK 252
W +L L+ G QG + +L ESG L++ +L L+C GSG+ + Y W+RQAPGK
Sbjct: 4 WGLLLCLVTGPQGVLSQVQLQESGPELIKSSQTLSLTCAGSGYSITSDYGRNWIRQAPGK 63
Query: 253 GLEWLATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRDWSYG 432
GLE + + G T Y+ S K +I RD +N LQ++S+ EDTA Y R+ +
Sbjct: 64 GLEQMGCMYYNGDTY-YSPSIKSHTSICRDTPKNQFSLQLSSVPTEDTAMCYLARNTALS 122
Query: 433 IDLW 444
+D+W
Sbjct: 123 LDIW 126
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 65.9 bits (159), Expect = 1e-10
Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 6/222 (2%)
Frame = +1
Query: 88 VVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWL 267
+ L AL G + L + G + ++C GS + + W +Q PG GL+ +
Sbjct: 8 LTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGVNWYQQVPGSGLKTI 67
Query: 268 ATISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTR-DWSYGIDLW 444
+ +G D G S NTA L +NSL+ ED A Y+C D+S ++
Sbjct: 68 I-YEDKYRPSGVPDRFSG------SKSGNTATLTINSLQAEDEADYFCAAGDYSVNTAVF 120
Query: 445 GPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDFFPSEPLTVTWSPSREGVI 621
G G + P + + E G + CL+ DF+P +TV W + I
Sbjct: 121 GGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGS-VTVVWK-ADGSTI 178
Query: 622 VRNFPPA----QAGGLYTMSSQLTLPVEQCPADQILKCQVQH 735
RN Q+ Y SS L+L + C+V H
Sbjct: 179 TRNVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTH 220
Score = 58.2 bits (139), Expect = 2e-08
Identities = 36/100 (36%), Positives = 49/100 (49%)
Frame = +1
Query: 1111 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 1290
P V L PP +EEL N+ TL CL+ F P V V W G + R+ E+ Q
Sbjct: 136 PSVTLFPPSTEELNGNK-ATLVCLISDFYPGSVTVVWKADGSTITRNV----ETTRASKQ 190
Query: 1291 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1410
+ YA +S L + + DWK ++SC V HE + T K
Sbjct: 191 SNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKTVK 230
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 60.1 bits (144), Expect = 5e-09
Identities = 37/101 (36%), Positives = 48/101 (47%)
Frame = +1
Query: 1111 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 1290
P V L PP EEL+ N+ TL CL+ F P V V W G + R+ S Q
Sbjct: 137 PSVTLFPPSKEELSANK-ATLVCLISDFYPGSVTVAWKADGSTITRNVKTTRASK----Q 191
Query: 1291 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQKT 1413
+ YA +S L + DWK ++SC V HE + T KT
Sbjct: 192 SNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKT 232
Score = 52.4 bits (124), Expect = 1e-06
Identities = 56/223 (25%), Positives = 84/223 (37%), Gaps = 9/223 (4%)
Frame = +1
Query: 94 LFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLAT 273
L L G +L + V G + ++C G + + W +Q PG+ A
Sbjct: 10 LLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAH--WYQQKPGQ-----AP 62
Query: 274 ISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYC-TRDWSYGI---DL 441
+ A RF+ S+ S TA L + + ED A YYC + D S + DL
Sbjct: 63 VLVIYADDNLASGIPDRFSGSK--SDTTATLTIRGAQAEDEADYYCQSADISGPVSLCDL 120
Query: 442 WGPGXXXXXXXXXXTSPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGV 618
+G G + P + E A + CL+ DF+P +TV W +
Sbjct: 121 FGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGS-VTVAWK-ADGST 178
Query: 619 IVRNFPPA----QAGGLYTMSSQLTLPVEQCPADQILKCQVQH 735
I RN Q+ Y SS L+L + C+V H
Sbjct: 179 ITRNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTH 221
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 56.2 bits (134), Expect = 8e-08
Identities = 36/110 (32%), Positives = 49/110 (44%)
Frame = +1
Query: 1081 ITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYL 1260
+T P F P V L PP +EEL+ TL CL+ F P +V V W G + R
Sbjct: 151 VTIPDQPKFPPSVTLFPPSTEELS-TYTATLVCLISDFYPGNVTVAWKADGSPVTRGVVT 209
Query: 1261 VWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1410
S Q+ Y +S L + +WK ++SC V HE + T K
Sbjct: 210 SQAS----QQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKTVK 255
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 53.5 bits (127), Expect = 5e-07
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Frame = +1
Query: 814 QPPALADLLLGSNASLTCTLSGLKKSEGVSFTW-QPSGGKD------AVQASPT----RD 960
Q P+ LG S+TC S +S W Q GK A+ SP+ +
Sbjct: 26 QSPSSLSASLGDRVSITCQAS---QSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82
Query: 961 SCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPS 1140
S + L + + T+ C + + + + T + K + P V L P
Sbjct: 83 SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAEPSVFLFKPSD 142
Query: 1141 EELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSV 1320
E+L V++ CLV F PKD+ V+W G + S + TY+++S+
Sbjct: 143 EQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNF--QNSFTDQDSKKSTYSLSSI 199
Query: 1321 LRVDAEDWKQGDTFSCMVGHEAL 1389
L + + +++ D ++C V H++L
Sbjct: 200 LTLPSSEYQSHDAYTCEVSHKSL 222
Score = 50.4 bits (119), Expect = 4e-06
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 6/229 (2%)
Frame = +1
Query: 91 VLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLA 270
+L L G +G+ ++ +S L G R+S T + W +Q PGK + L
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGD-RVSITCQASQSIDTKLAWYQQKPGKAPKLLI 68
Query: 271 TISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRDWSYGIDLWGP 450
R + +F+ S + T L ++SL+ +D A YYC + ++ +G
Sbjct: 69 YAIPRSPSW-----FPSQFSGSGFGADFT--LTISSLKADDIATYYCLSR-NCCVNTFGQ 120
Query: 451 GXXXXXXXXXXTSPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVR 627
G P +F + G V + CLV DF+P + + V W
Sbjct: 121 GTKVEIKRSD-AEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSS 178
Query: 628 NFPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 759
NF + Y++SS LTLP + + C+V H S ++ V
Sbjct: 179 NFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 53.5 bits (127), Expect = 5e-07
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Frame = +1
Query: 814 QPPALADLLLGSNASLTCTLSGLKKSEGVSFTW-QPSGGKD------AVQASPT----RD 960
Q P+ LG S+TC S +S W Q GK A+ SP+ +
Sbjct: 26 QSPSSLSASLGDRVSITCQAS---QSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82
Query: 961 SCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPS 1140
S + L + + T+ C + + + + T + K + P V L P
Sbjct: 83 SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAEPSVFLFKPSD 142
Query: 1141 EELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSV 1320
E+L V++ CLV F PKD+ V+W G + S + TY+++S+
Sbjct: 143 EQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNF--QNSFTDQDSKKSTYSLSSI 199
Query: 1321 LRVDAEDWKQGDTFSCMVGHEAL 1389
L + + +++ D ++C V H++L
Sbjct: 200 LTLPSSEYQSHDAYTCEVSHKSL 222
Score = 50.4 bits (119), Expect = 4e-06
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 6/229 (2%)
Frame = +1
Query: 91 VLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFDFSGTYIYWVRQAPGKGLEWLA 270
+L L G +G+ ++ +S L G R+S T + W +Q PGK + L
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGD-RVSITCQASQSIDTKLAWYQQKPGKAPKLLI 68
Query: 271 TISTRGGTTGYADSAKGRFTISRDNSQNTAYLQMNSLRIEDTARYYCTRDWSYGIDLWGP 450
R + +F+ S + T L ++SL+ +D A YYC + ++ +G
Sbjct: 69 YAIPRSPSW-----FPSQFSGSGFGADFT--LTISSLKADDIATYYCLSR-NCCVNTFGQ 120
Query: 451 GXXXXXXXXXXTSPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVR 627
G P +F + G V + CLV DF+P + + V W
Sbjct: 121 GTKVEIKRSD-AEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSS 178
Query: 628 NFPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 759
NF + Y++SS LTLP + + C+V H S ++ V
Sbjct: 179 NFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,229,142
Number of extensions: 2159037
Number of successful extensions: 11366
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 11160
Number of HSP's successfully gapped: 17
Length of query: 520
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,140,958
Effective search space: 5840215654
Effective search space used: 5840215654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TCH01_0093_E11
(1562 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 595 e-167
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 230 2e-57
>gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffold764
Length = 7672
Score = 595 bits (300), Expect = e-167
Identities = 303/304 (99%)
Strand = Plus / Plus
Query: 472 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 1944
Query: 532 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 2004
Query: 592 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 2064
Query: 652 ggcctgtacaccatgagcagccagctgaccttgccagtcgagcagtgcccagccgatcag 711
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2065 ggcctgtacaccatgagcagccaggtgaccttgccagtcgagcagtgcccagccgatcag 2124
Query: 712 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 2184
Query: 772 aaag 775
||||
Sbjct: 2185 aaag 2188
Score = 563 bits (284), Expect = e-157
Identities = 287/288 (99%)
Strand = Plus / Plus
Query: 774 agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 2405
Query: 834 cctgctcctgggctccaatgccagcctcacgtgcacactcagtggcctgaaaaaatccga 893
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2406 cctgctcctgggctccaatgccagcctcacctgcacactcagtggcctgaaaaaatccga 2465
Query: 894 gggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtccaggcgtcccccac 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 gggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtccaggcgtcccccac 2525
Query: 954 gcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctgtgctgatccttg 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 gcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctgtgctgatccttg 2585
Query: 1014 gaacaaaggagagacattctcctgcaccgccgcccactctgagttgaa 1061
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 gaacaaaggagagacattctcctgcaccgccgcccactctgagttgaa 2633
Score = 365 bits (184), Expect = 5e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 1095 agtgaacacgttccggccccaggtccacctgctgccgccgccgtcggaggagctggccct 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 agtgaacacgttccggccccaggtccacctgctgccgccgccgtcggaggagctggccct 2928
Query: 1155 caatgagctggtgacactgacatgcctggtgcggggcttcagccccaaggatgtgctggt 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 caatgagctggtgacactgacatgcctggtgcggggcttcagccccaaggatgtgctggt 2988
Query: 1215 gcgatggctgcaagggggccaggaactgccccgtgacaagtacctcgtctgggaatccct 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 gcgatggctgcaagggggccaggaactgccccgtgacaagtacctcgtctgggaatccct 3048
Query: 1275 gcca 1278
||||
Sbjct: 3049 gcca 3052
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1295 tccccacctacgccgtgaccagcgtgctgcgcgtggacgccgaggactggaagcagggag 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 tccccacctacgccgtgaccagcgtgctgcgcgtggacgccgaggactggaagcagggag 3212
Query: 1355 acaccttctcctgcatggtgggccacgaggccctgcccctggccttcacccagaagacca 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 acaccttctcctgcatggtgggccacgaggccctgcccctggccttcacccagaagacca 3272
Query: 1415 t 1415
|
Sbjct: 3273 t 3273
Score = 93.7 bits (47), Expect = 3e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 1489 tgagccgccccgcccactcgcccctcgaataaactccgtgctcgctt 1535
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 tgagccgccccgcccactcgcccctcgaataaactccgtgctcgctt 3420
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 230 bits (116), Expect = 2e-57
Identities = 158/172 (91%)
Strand = Plus / Minus
Query: 247 gggaaggggctggagtggctggcaactattagtacacgtggtggtaccaccggctacgca 306
|||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||
Sbjct: 2633 gggaaggggctggagtggctggcatatattactagtagtggtggtagcacctactacgca 2574
Query: 307 gactctgcgaagggccgattcaccatctccagagacaactcccagaacacggcctatctg 366
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2573 gactctgtgaagggccgattcaccatctccagcgacaactcccagaacacggcctatctg 2514
Query: 367 caaatgaacagcctgagaattgaagacacggcccgctattactgtacaagag 418
||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 2513 caaatgaacagcctgagaaccgaagacacggcccgctattactgtgcaagag 2462
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,349,940
Number of extensions: 270
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 6
Length of query: 1562
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1541
Effective length of database: 2,808,413,156
Effective search space: 4327764673396
Effective search space used: 4327764673396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)