Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0014_E03
(2290 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_775089.1| E1A-binding protein p400 isoform 2 [Mus musculu... 726 0.0
Alignment gi|NP_083613.2| E1A-binding protein p400 isoform 1 [Mus musculu... 669 0.0
Alignment gi|XP_001480453.2| PREDICTED: helicase SRCAP isoform 1 [Mus mus... 138 2e-32
Alignment gi|XP_003084784.1| PREDICTED: helicase SRCAP [Mus musculus]. 138 2e-32
Alignment gi|XP_003086692.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRC... 138 2e-32
>ref|NP_775089.1| E1A-binding protein p400 isoform 2 [Mus musculus].
Length = 2999
Score = 726 bits (1875), Expect = 0.0
Identities = 405/675 (60%), Positives = 431/675 (63%), Gaps = 10/675 (1%)
Frame = +2
Query: 239 PPKPTPVPRHALCAIGQPIGTPVPWLPSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG 418
P +P+P P L + P + S+SPTGGFVDASVLVRQISLSPSSG HFVFQE
Sbjct: 135 PTQPSPGPGQTLQNVRAGAPGPGLGICSNSPTGGFVDASVLVRQISLSPSSGGHFVFQEA 194
Query: 419 SGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVRHLGPQSPA--GGAGLQPLSS 592
GL QMAQG QVQLQH+GAPI VRERRLSQPHAQSGGT+ HLGPQSPA GG GLQPL+S
Sbjct: 195 PGLTQMAQGAQVQLQHSGAPITVRERRLSQPHAQSGGTIHHLGPQSPAAAGGTGLQPLAS 254
Query: 593 PGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------SAFGMX 754
P HI SAFGM
Sbjct: 255 PNHITTASLPPQISSIIQGQLIQQQQQVLQGQPMNRSLGFERTPGVLLPGVGGPSAFGMT 314
Query: 755 XXXXXXXXXXXXXXXGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYR 934
GLSS+PLTS GS+G++K P+KLEEIPPASQE+AQMRKQCLDYHY+
Sbjct: 315 SPPPPTSPSRTTMPPGLSSVPLTSMGSSGMKKVPKKLEEIPPASQEMAQMRKQCLDYHYK 374
Query: 935 EMEALKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL-XXXXXXXX 1111
EMEALKE FKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLD+
Sbjct: 375 EMEALKEVFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEE 434
Query: 1112 XXXXSEVINDEQQALAGTLVAGAGSTVETDPFKRXXXXXXXXXXXXXXXXXXXXXXKQSQ 1291
SEVINDE Q+L G+LV G GS E DPFKR KQSQ
Sbjct: 435 EEGKSEVINDEHQSLTGSLVVGPGSATEADPFKRQQVMPPTGGMPPTPQATQLTGQKQSQ 494
Query: 1292 QQYDPSTGPPVQNAASLHTPPPQLPGRLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIP 1471
QQYDPSTGPPVQNAASLHTPPPQLP RLP A +P LP LQFSQQ QMVE QLQIP
Sbjct: 495 QQYDPSTGPPVQNAASLHTPPPQLPARLPPASVPATALPSTLQFSQQSQMVEASTQLQIP 554
Query: 1472 VKTXXXXXXXXXXXXXXXXXXXXXXXXXXLHVPMPGKAQMQAPPLSAQPQTVASS-XXXX 1648
VKT LHVPMPGKAQMQ LS+Q QTVAS+
Sbjct: 555 VKTQQLNAPIPAPLPSQLPAPSSQPAQPALHVPMPGKAQMQTSQLSSQTQTVASTRPPLD 614
Query: 1649 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRPSLATTKSLSPVTSRSPGAAVS 1828
VNRPS AT K+LSP+TSRSPG AVS
Sbjct: 615 SAQPCQRSLPTSSSSSSLVPVSGSGPGPSPARSSPVNRPSSATNKALSPITSRSPGVAVS 674
Query: 1829 ALPKPQSPAQNTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRP 2008
A PKPQSPAQN A QD SQDKLAEQI LENQIHQRIADLRKEGLWSLRRLPKLQEAPRP
Sbjct: 675 APPKPQSPAQNAASSQDGSQDKLAEQITLENQIHQRIADLRKEGLWSLRRLPKLQEAPRP 734
Query: 2009 KSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRR 2188
KSHWDYLLEEMQWMATDFAQERRWK+AAAKKLVRTVARHH Q+RLRR
Sbjct: 735 KSHWDYLLEEMQWMATDFAQERRWKLAAAKKLVRTVARHHEEKKLREERGKKEEQSRLRR 794
Query: 2189 IAASTAREIEYFWSN 2233
IAA+TAREIEYFWSN
Sbjct: 795 IAATTAREIEYFWSN 809
Score = 57.8 bits (138), Expect = 4e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 150 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAH 242
MHHGSGPQNVQHQLQRSR+F SE EEQPAH
Sbjct: 1 MHHGSGPQNVQHQLQRSRSFTGSE-EEQPAH 30
>ref|NP_083613.2| E1A-binding protein p400 isoform 1 [Mus musculus].
Length = 3035
Score = 669 bits (1725), Expect = 0.0
Identities = 391/711 (54%), Positives = 418/711 (58%), Gaps = 46/711 (6%)
Frame = +2
Query: 239 PPKPTPVPRHALCAIGQPIGTPVPWLPSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG 418
P +P+P P L + P + S+SPTGGFVDASVLVRQISLSPSSG HFVFQE
Sbjct: 135 PTQPSPGPGQTLQNVRAGAPGPGLGICSNSPTGGFVDASVLVRQISLSPSSGGHFVFQEA 194
Query: 419 SGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVRHLGPQSPA--GGAGLQPLSS 592
GL QMAQG QVQLQH+GAPI VRERRLSQPHAQSGGT+ HLGPQSPA GG GLQPL+S
Sbjct: 195 PGLTQMAQGAQVQLQHSGAPITVRERRLSQPHAQSGGTIHHLGPQSPAAAGGTGLQPLAS 254
Query: 593 PGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------SAFGMX 754
P HI SAFGM
Sbjct: 255 PNHITTASLPPQISSIIQGQLIQQQQQVLQGQPMNRSLGFERTPGVLLPGVGGPSAFGMT 314
Query: 755 XXXXXXXXXXXXXXXGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYR 934
GLSS+PLTS GS+G++K P+KLEEIPPASQE+AQMRKQCLDYHY+
Sbjct: 315 SPPPPTSPSRTTMPPGLSSVPLTSMGSSGMKKVPKKLEEIPPASQEMAQMRKQCLDYHYK 374
Query: 935 EMEALKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL-XXXXXXXX 1111
EMEALKE FKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLD+
Sbjct: 375 EMEALKEVFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEE 434
Query: 1112 XXXXSEVINDEQQALAGTLVAGAGSTVETDPFKRXXXXXXXXXXXXXXXXXXXXXXKQSQ 1291
SEVINDE Q+L G+LV G GS E DPFKR
Sbjct: 435 EEGKSEVINDEHQSLTGSLVVGPGSATEADPFKRQQVMPPTEQSKRPRLEVGHPGVVFQH 494
Query: 1292 ---------QQYDPSTG---PPVQNAASL------------------------HTPPPQL 1363
QQ P+ PP A L HTPPPQL
Sbjct: 495 PGVNAGVPLQQLMPTVQGGMPPTPQATQLTGQKQSQQQYDPSTGPPVQNAASLHTPPPQL 554
Query: 1364 PGRLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTXXXXXXXXXXXXXXXXXXXXX 1543
P RLP A +P LP LQFSQQ QMVE QLQIPVKT
Sbjct: 555 PARLPPASVPATALPSTLQFSQQSQMVEASTQLQIPVKTQQLNAPIPAPLPSQLPAPSSQ 614
Query: 1544 XXXXXLHVPMPGKAQMQAPPLSAQPQTVASS-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 1720
LHVPMPGKAQMQ LS+Q QTVAS+
Sbjct: 615 PAQPALHVPMPGKAQMQTSQLSSQTQTVASTRPPLDSAQPCQRSLPTSSSSSSLVPVSGS 674
Query: 1721 XXXXXXXXXXXVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLA 1900
VNRPS AT K+LSP+TSRSPG AVSA PKPQSPAQN A QD SQDKLA
Sbjct: 675 GPGPSPARSSPVNRPSSATNKALSPITSRSPGVAVSAPPKPQSPAQNAASSQDGSQDKLA 734
Query: 1901 EQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRW 2080
EQI LENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRW
Sbjct: 735 EQITLENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRW 794
Query: 2081 KVAAAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIEYFWSN 2233
K+AAAKKLVRTVARHH Q+RLRRIAA+TAREIEYFWSN
Sbjct: 795 KLAAAKKLVRTVARHHEEKKLREERGKKEEQSRLRRIAATTAREIEYFWSN 845
Score = 57.8 bits (138), Expect = 4e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 150 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAH 242
MHHGSGPQNVQHQLQRSR+F SE EEQPAH
Sbjct: 1 MHHGSGPQNVQHQLQRSRSFTGSE-EEQPAH 30
>ref|XP_001480453.2| PREDICTED: helicase SRCAP isoform 1 [Mus musculus].
Length = 3237
Score = 138 bits (348), Expect = 2e-32
Identities = 65/125 (52%), Positives = 82/125 (65%)
Frame = +2
Query: 1859 NTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEE 2038
N + S ++AEQ E +I RIA+LRKEG WSL+RLPK+ E PRPK HWDYL EE
Sbjct: 84 NRGQKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEE 143
Query: 2039 MQWMATDFAQERRWKVAAAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIE 2218
MQW++ DFAQERRWK A+K+VR V RHH Q +LRRIA++ A+++
Sbjct: 144 MQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVR 203
Query: 2219 YFWSN 2233
FWSN
Sbjct: 204 QFWSN 208
>ref|XP_003084784.1| PREDICTED: helicase SRCAP [Mus musculus].
Length = 3237
Score = 138 bits (348), Expect = 2e-32
Identities = 65/125 (52%), Positives = 82/125 (65%)
Frame = +2
Query: 1859 NTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEE 2038
N + S ++AEQ E +I RIA+LRKEG WSL+RLPK+ E PRPK HWDYL EE
Sbjct: 84 NRGQKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEE 143
Query: 2039 MQWMATDFAQERRWKVAAAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIE 2218
MQW++ DFAQERRWK A+K+VR V RHH Q +LRRIA++ A+++
Sbjct: 144 MQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVR 203
Query: 2219 YFWSN 2233
FWSN
Sbjct: 204 QFWSN 208
>ref|XP_003086692.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP [Mus musculus].
Length = 3231
Score = 138 bits (348), Expect = 2e-32
Identities = 65/125 (52%), Positives = 82/125 (65%)
Frame = +2
Query: 1859 NTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEE 2038
N + S ++AEQ E +I RIA+LRKEG WSL+RLPK+ E PRPK HWDYL EE
Sbjct: 84 NRGQKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEE 143
Query: 2039 MQWMATDFAQERRWKVAAAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIE 2218
MQW++ DFAQERRWK A+K+VR V RHH Q +LRRIA++ A+++
Sbjct: 144 MQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVR 203
Query: 2219 YFWSN 2233
FWSN
Sbjct: 204 QFWSN 208
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 76,071,910
Number of extensions: 2302048
Number of successful extensions: 16820
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 16323
Number of HSP's successfully gapped: 12
Length of query: 763
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 654
Effective length of database: 12,343,635
Effective search space: 8072737290
Effective search space used: 8072737290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0014_E03
(2290 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543352.2| PREDICTED: similar to E1A binding protein p400 ... 681 0.0
Alignment gi|XP_536900.2| PREDICTED: similar to Snf2-related CBP activato... 142 1e-33
>ref|XP_543352.2| PREDICTED: similar to E1A binding protein p400 (p400 kDa
SWI2/SNF2-related protein) (Domino homolog) (hDomino)
(CAG repeat protein 32) (Trinucleotide repeat-containing
gene 12 protein) [Canis familiaris].
Length = 3119
Score = 681 bits (1757), Expect = 0.0
Identities = 413/753 (54%), Positives = 432/753 (57%), Gaps = 88/753 (11%)
Frame = +2
Query: 239 PPKPTPVPRHALCAIGQPIGTPVPWLP--SSSPTGGFVDASVLVRQISLSPSSGSHFVFQ 412
P +P+P P L ++ GTP P L SSSPTGGFVDASVLVRQ+SLSPSSG HFVFQ
Sbjct: 136 PTQPSPGPGPGLQSMRT--GTPGPGLGLCSSSPTGGFVDASVLVRQMSLSPSSGGHFVFQ 193
Query: 413 EGSGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVRHLGPQSPA--GGAGLQPL 586
E SGLAQMA G QVQLQH GAPIAVRERRLSQPHAQSGGTV HLGPQSPA G A LQPL
Sbjct: 194 ESSGLAQMAPGTQVQLQHTGAPIAVRERRLSQPHAQSGGTVHHLGPQSPAAAGAASLQPL 253
Query: 587 SSPGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAFGMXXXXX 766
+SPGHI ASAFGM
Sbjct: 254 ASPGHITTASLPPQISSIIQGQLVQQQQVLQGPPLTRPLLPGVGVGVGGASAFGMTSPPP 313
Query: 767 XXXXXXXXXXXGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEA 946
GLSSLPLTSAGSAGVRKAP+KLEEIPPASQELAQMRKQCL+YHYREMEA
Sbjct: 314 PTSPSRTAVPPGLSSLPLTSAGSAGVRKAPKKLEEIPPASQELAQMRKQCLEYHYREMEA 373
Query: 947 LKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL----XXXXXXXXX 1114
LKEAF+EYL+ELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL
Sbjct: 374 LKEAFREYLVELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEEE 433
Query: 1115 XXXSEVINDE------------------------------------QQALAGTLVAGAGS 1186
SEVINDE QQAL G LVAGAGS
Sbjct: 434 EEKSEVINDEVKVVTGKDGQTGTPVAIATQLPPNVSAAFSSQQQPLQQALTGALVAGAGS 493
Query: 1187 TVETDPFKRXXXXXXXXXXXXXXXXXXXXXXKQ-----------------SQQQYDPSTG 1315
ETDPFKR + QQ P+
Sbjct: 494 AGETDPFKRQQAGTPAGMFWSTGSEQSKRPRLEVGHQGAVFQHPGANTGVPLQQLMPTAQ 553
Query: 1316 ---PPVQNAASL------------HTPPP------------QLPGRLPAAGLPTVPLPPA 1414
PP A L T PP QLPGRLP GLP PLPPA
Sbjct: 554 GGMPPAPQATQLAGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPGRLPPTGLPAAPLPPA 613
Query: 1415 LQFSQQPQMVEPQPQLQIPVKTXXXXXXXXXXXXXXXXXXXXXXXXXXLHVPMPGKAQMQ 1594
L FSQQPQ+VEP QLQ+P KT LH PMPGKAQMQ
Sbjct: 614 LHFSQQPQVVEPHAQLQVPAKTQQPNAPVPVPPPSQLPAPPPQPVPQALHAPMPGKAQMQ 673
Query: 1595 APPLSAQPQTVASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRPSLA 1774
A PLS QPQ + S+ NRPS A
Sbjct: 674 AAPLSTQPQVLTSTRPSVDLAQPCQRPPPATSSTSSIAPASGSGLSPARVSAG-NRPSSA 732
Query: 1775 TTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQIALENQIHQRIADLRK 1954
KSLSPVTSRSPGAAVSA PKPQSPAQN APPQDSSQDKL EQIALENQIHQRIADLRK
Sbjct: 733 ANKSLSPVTSRSPGAAVSAPPKPQSPAQNAAPPQDSSQDKLVEQIALENQIHQRIADLRK 792
Query: 1955 EGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVARHHXX 2134
EGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWK+AAA+KL+RTV RHH
Sbjct: 793 EGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKMAAARKLIRTVVRHHEE 852
Query: 2135 XXXXXXXXXXXXQNRLRRIAASTAREIEYFWSN 2233
QNRLRRIAASTAREIE FWSN
Sbjct: 853 KKLREERGRKEEQNRLRRIAASTAREIECFWSN 885
Score = 62.4 bits (150), Expect = 2e-09
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +3
Query: 150 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAH 242
MHHGSGPQ+VQHQLQRSRAF SSEGEEQ AH
Sbjct: 1 MHHGSGPQSVQHQLQRSRAFTSSEGEEQQAH 31
>ref|XP_536900.2| PREDICTED: similar to Snf2-related CBP activator protein [Canis
familiaris].
Length = 3104
Score = 142 bits (359), Expect = 1e-33
Identities = 75/158 (47%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +2
Query: 1769 LATTKSLSPVTSRSPGAAV--SALPKPQSP-AQNTAPPQDSSQDKLAEQIALENQIHQRI 1939
+A SL GA V L PQ+ N P + S ++AEQ E +I RI
Sbjct: 51 IAQDSSLDGPPGPPDGATVPLEGLSLPQAADLANKGPKWEKSHAEIAEQAKHEAEIETRI 110
Query: 1940 ADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVA 2119
A+LRKEG WSL+RLPK+ E PRPK HWDYL EEMQW++ DFAQERRWK A+K+VR V
Sbjct: 111 AELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVI 170
Query: 2120 RHHXXXXXXXXXXXXXXQNRLRRIAASTAREIEYFWSN 2233
RHH Q +LRRIA++ A+++ FWSN
Sbjct: 171 RHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSN 208
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 93,357,903
Number of extensions: 2922445
Number of successful extensions: 22788
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 22333
Number of HSP's successfully gapped: 7
Length of query: 763
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 652
Effective length of database: 15,174,208
Effective search space: 9893583616
Effective search space used: 9893583616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0014_E03
(2290 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056224.3| E1A-binding protein p400 [Homo sapiens]. 657 0.0
Alignment gi|NP_006653.2| helicase SRCAP [Homo sapiens]. 141 2e-33
>ref|NP_056224.3| E1A-binding protein p400 [Homo sapiens].
Length = 3123
Score = 657 bits (1696), Expect = 0.0
Identities = 387/712 (54%), Positives = 417/712 (58%), Gaps = 47/712 (6%)
Frame = +2
Query: 239 PPKPTPVPRHALCAIGQPIGTPVPWLPSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG 418
P +P+P P AL + P L SSSPTGGFVDASVLVRQISLSPSSG HFVFQ+G
Sbjct: 136 PTQPSPGPGQALQNVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGGHFVFQDG 195
Query: 419 SGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVRHLGPQSPA--GGAGLQPLSS 592
SGL Q+AQG QVQLQH G PI VRERR SQPH QSGGT+ HLGPQSPA GGAGLQPL+S
Sbjct: 196 SGLTQIAQGAQVQLQHPGTPITVRERRPSQPHTQSGGTIHHLGPQSPAAAGGAGLQPLAS 255
Query: 593 PGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----ASAFGMXX 757
P HI A+ FGM
Sbjct: 256 PSHITTANLPPQISSIIQGQLVQQQQVLQGPPLPRPLGFERTPGVLLPGAGGAAGFGMTS 315
Query: 758 XXXXXXXXXXXXXXGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYRE 937
GLSSLPLTS G+ G++K P+KLEEIPPAS E+AQMRKQCLDYHY+E
Sbjct: 316 PPPPTSPSRTAVPPGLSSLPLTSVGNTGMKKVPKKLEEIPPASPEMAQMRKQCLDYHYQE 375
Query: 938 MEALKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL-XXXXXXXXX 1114
M+ALKE FKEYLIELFFLQH QGNMMDFLAFKKKHYAPLQAYLRQNDLD+
Sbjct: 376 MQALKEVFKEYLIELFFLQHFQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEEE 435
Query: 1115 XXXSEVINDEQQALAGTLVAGAGSTVETDPFKRXXXXXXXXXXXXXXXXXXXXXXK---- 1282
SEVINDEQQALAG+LVAGAGSTVETD FKR +
Sbjct: 436 EEKSEVINDEQQALAGSLVAGAGSTVETDLFKRQQAMPSTGMAEQSKRPRLEVGHQGVVF 495
Query: 1283 ---------QSQQQYDPSTG--PPVQNAA------------------------SLHTPPP 1357
QQ + G PP AA SLHTP P
Sbjct: 496 QHPGADAGVPLQQLMPTAQGGMPPTPQAAQLAGQRQSQQQYDPSTGPPVQNAASLHTPLP 555
Query: 1358 QLPGRLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTXXXXXXXXXXXXXXXXXXX 1537
QLPGRLP AG+PT L ALQF+QQPQ+VE Q QLQIPVKT
Sbjct: 556 QLPGRLPPAGVPTAALSSALQFAQQPQVVEAQTQLQIPVKTQQPNVPIPAPPSSQLPIPP 615
Query: 1538 XXXXXXXLHVPMPGKAQMQAPPLSAQPQTVASSXXXXXXXXXXXXXXXXXXXXXXXXXXX 1717
LHVP PGK Q+QA LS+ PQ VAS+
Sbjct: 616 SQPAQLALHVPTPGKVQVQASQLSSLPQMVASTRLPVDPAPPCPRPLPTSSTSSLAPVSG 675
Query: 1718 XXXXXXXXXXXXVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKL 1897
VNRPS AT K+LSPVTSR+PG SA KPQSPAQN QDSSQD L
Sbjct: 676 SGPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPTKPQSPAQNATSSQDSSQDTL 735
Query: 1898 AEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR 2077
EQI LENQ+HQRIA+LRK GLWS RRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR
Sbjct: 736 TEQITLENQVHQRIAELRKAGLWSQRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR 795
Query: 2078 WKVAAAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIEYFWSN 2233
WKVAAAKKLVRTV RHH Q+RLRRIAASTAREIE FWSN
Sbjct: 796 WKVAAAKKLVRTVVRHHEEKQLREERGKKEEQSRLRRIAASTAREIECFWSN 847
Score = 61.2 bits (147), Expect = 4e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 150 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAH 242
MHHG+GPQNVQHQLQRSRA SEGEEQPAH
Sbjct: 1 MHHGTGPQNVQHQLQRSRACPGSEGEEQPAH 31
>ref|NP_006653.2| helicase SRCAP [Homo sapiens].
Length = 3230
Score = 141 bits (356), Expect = 2e-33
Identities = 66/125 (52%), Positives = 83/125 (66%)
Frame = +2
Query: 1859 NTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEE 2038
N P + S ++AEQ E +I RIA+LRKEG WSL+RLPK+ E PRPK HWDYL EE
Sbjct: 84 NKGPKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEE 143
Query: 2039 MQWMATDFAQERRWKVAAAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIE 2218
MQW++ DFAQERRWK A+K+VR V RHH Q +LRRIA++ A+++
Sbjct: 144 MQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVR 203
Query: 2219 YFWSN 2233
FWSN
Sbjct: 204 QFWSN 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 91,003,724
Number of extensions: 2823987
Number of successful extensions: 21396
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 20896
Number of HSP's successfully gapped: 6
Length of query: 763
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 653
Effective length of database: 14,671,124
Effective search space: 9580243972
Effective search space used: 9580243972
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0014_E03
(2290 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193788.1| E1A-binding protein p400 [Bos taurus]. 733 0.0
Alignment gi|XP_002701740.1| PREDICTED: hypothetical protein [Bos taurus]. 358 1e-98
>ref|NP_001193788.1| E1A-binding protein p400 [Bos taurus].
Length = 3092
Score = 733 bits (1891), Expect = 0.0
Identities = 428/707 (60%), Positives = 440/707 (62%), Gaps = 42/707 (5%)
Frame = +2
Query: 239 PPKPTPVPRHALCAIGQPIGTPVPWLPSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG 418
P +P+P P L ++ P L SSSPTGGFVDASVLVRQISLSPSSG HFVFQEG
Sbjct: 135 PTQPSPAPGPGLQSVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGGHFVFQEG 194
Query: 419 SGLAQMAQGGQVQLQHAGAPIAV-RERRLSQPHAQSGGTVRHLGPQSPA--GGAGLQPLS 589
SGLAQMA G QVQLQHAGAPI V RERRLSQPHAQSGGTV HLGPQSPA GGAGLQPLS
Sbjct: 195 SGLAQMAPGTQVQLQHAGAPITVSRERRLSQPHAQSGGTVHHLGPQSPAAAGGAGLQPLS 254
Query: 590 SPGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAFGMXXXXXX 769
SPGHI SAFGM
Sbjct: 255 SPGHITTTSLPPQISSIIQGQLIQQQQVLQGPPLTRPLLPGVGVGVGGTSAFGMTSPPPP 314
Query: 770 XXXXXXXXXXGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEAL 949
GLSSLPL+SAGS GVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEAL
Sbjct: 315 TSPSRTAVPPGLSSLPLSSAGSTGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEAL 374
Query: 950 KEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL--XXXXXXXXXXXX 1123
KEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL
Sbjct: 375 KEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEEEK 434
Query: 1124 SEVINDEQQALAGTLVAGAGSTVETDPFKRXXXXXXXXXXXXXXXXXXXXXXKQSQ---- 1291
SEVINDE QALAGTLVA AGS +ETDPFKR
Sbjct: 435 SEVINDE-QALAGTLVAAAGSAIETDPFKRQQAGPPAEQSKRPRLEVGHQGVVFQHPGVN 493
Query: 1292 -----QQYDPSTG---PPVQNAASL------------------------HTPPPQLPGRL 1375
QQ P+ PP A L HTPPPQLP RL
Sbjct: 494 TGVPLQQLMPTVQGGMPPAPQATQLAGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPSRL 553
Query: 1376 PAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTXXXXXXXXXXXXXXXXXXXXXXXXX 1555
P AGLP PLPPALQF QPQM EPQ QL +PVKT
Sbjct: 554 PQAGLPAAPLPPALQFPPQPQMAEPQTQLPVPVKTQPPNAPAPAPPPGPLPTAPPQPTPP 613
Query: 1556 XLHVPMPGKAQMQAPPLSAQPQTVA-SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1732
LH+PMPGKAQMQAPPL AQPQTVA +
Sbjct: 614 TLHIPMPGKAQMQAPPLPAQPQTVAPTRPPVDPTQSCLRPPPSTSTTSTVAPASGSGLGP 673
Query: 1733 XXXXXXXVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQIA 1912
VNRPSLAT KSLSPVT+R+PGAAVSA PKPQSPAQN APPQDSSQDKLAEQIA
Sbjct: 674 SPARASPVNRPSLATNKSLSPVTARAPGAAVSAPPKPQSPAQNAAPPQDSSQDKLAEQIA 733
Query: 1913 LENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAA 2092
LENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAA
Sbjct: 734 LENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAA 793
Query: 2093 AKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIEYFWSN 2233
AKKLVRTVARHH QNRLRRIAASTAREIEYFWSN
Sbjct: 794 AKKLVRTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIEYFWSN 840
Score = 57.4 bits (137), Expect = 5e-08
Identities = 28/31 (90%), Positives = 28/31 (90%)
Frame = +3
Query: 150 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAH 242
MHHGSGPQNVQHQLQRSRAFA SE EEQ AH
Sbjct: 1 MHHGSGPQNVQHQLQRSRAFAGSE-EEQQAH 30
>ref|XP_002701740.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 522
Score = 358 bits (918), Expect = 1e-98
Identities = 204/313 (65%), Positives = 211/313 (67%), Gaps = 5/313 (1%)
Frame = +2
Query: 239 PPKPTPVPRHALCAIGQPIGTPVPWLPSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG 418
P +P+P P L ++ P L SSSPTGGFVDASVLVRQISLSPSSG HFVFQEG
Sbjct: 135 PTQPSPAPGPGLQSVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGGHFVFQEG 194
Query: 419 SGLAQMAQGGQVQLQHAGAPIAV-RERRLSQPHAQSGGTVRHLGPQSPA--GGAGLQPLS 589
SGLAQMA G QVQLQHAGAPI V RERRLSQPHAQSGGTV HLGPQSPA GGAGLQPLS
Sbjct: 195 SGLAQMAPGTQVQLQHAGAPITVSRERRLSQPHAQSGGTVHHLGPQSPAAAGGAGLQPLS 254
Query: 590 SPGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAFGMXXXXXX 769
SPGHI SAFGM
Sbjct: 255 SPGHITTTSLPPQISSIIQGQLIQQQQVLQGPPLTRPLLPGVGVGVGGTSAFGMTSPPPP 314
Query: 770 XXXXXXXXXXGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEAL 949
GLSSLPL+SAGS GVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEAL
Sbjct: 315 TSPSRTAVPPGLSSLPLSSAGSTGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEAL 374
Query: 950 KEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL--XXXXXXXXXXXX 1123
KEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL
Sbjct: 375 KEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEEEK 434
Query: 1124 SEVINDEQQALAG 1162
SEVINDE + + G
Sbjct: 435 SEVINDEVKVVTG 447
Score = 57.4 bits (137), Expect = 5e-08
Identities = 28/31 (90%), Positives = 28/31 (90%)
Frame = +3
Query: 150 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAH 242
MHHGSGPQNVQHQLQRSRAFA SE EEQ AH
Sbjct: 1 MHHGSGPQNVQHQLQRSRAFAGSE-EEQQAH 30
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 89,570,383
Number of extensions: 2857668
Number of successful extensions: 21998
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 21481
Number of HSP's successfully gapped: 8
Length of query: 763
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 653
Effective length of database: 14,041,694
Effective search space: 9169226182
Effective search space used: 9169226182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0014_E03
(2290 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927177.3| PREDICTED: LOW QUALITY PROTEIN: e1A-binding ... 809 0.0
Alignment gi|XP_003124552.2| PREDICTED: helicase SRCAP [Sus scrofa]. 142 6e-34
>ref|XP_001927177.3| PREDICTED: LOW QUALITY PROTEIN: e1A-binding protein p400 [Sus
scrofa].
Length = 3091
Score = 809 bits (2089), Expect = 0.0
Identities = 459/708 (64%), Positives = 465/708 (65%), Gaps = 43/708 (6%)
Frame = +2
Query: 239 PPKPTPVPRHALCAIGQPIGTPVPWLPSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG 418
P +P+P P L ++ P L SSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG
Sbjct: 136 PTQPSPGPGPGLQSVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEG 195
Query: 419 SGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVRHLGPQSPAGGAGLQPLSSPG 598
SGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTV HLGPQSPAGGAGLQPLSSPG
Sbjct: 196 SGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVHHLGPQSPAGGAGLQPLSSPG 255
Query: 599 HIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAFGMXXXXXXXXX 778
HI ASAFGM
Sbjct: 256 HITTTSLPPQISSIIQGQLIQQQQVLQGPPLTRPLLPGVGVGVGGASAFGMTSPPPPTSP 315
Query: 779 XXXXXXXGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEALKEA 958
GLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEALKEA
Sbjct: 316 SRTAVPPGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEALKEA 375
Query: 959 FKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLXXXXXXXXXXXXSEVIN 1138
FKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDL SEVIN
Sbjct: 376 FKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEKSEVIN 435
Query: 1139 DEQQALAGTLVAGAGSTVETDPFKRXXXXXXXXXXXXXXXXXXXXXXKQSQ--------- 1291
DEQQALAGTLVAGAGSTVETDPFKR +
Sbjct: 436 DEQQALAGTLVAGAGSTVETDPFKRQQAGPPAGMSQLTAQQSKRPRLEVGHQGVVFQHPG 495
Query: 1292 -------QQYDPSTG---PPVQNAASL------------------------HTPPPQLPG 1369
QQ P+ PP AA L HTPPPQLPG
Sbjct: 496 VNTGVPLQQLMPTVQGGMPPAPQAAQLAGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPG 555
Query: 1370 RLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTXXXXXXXXXXXXXXXXXXXXXXX 1549
RLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKT
Sbjct: 556 RLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTQQPNAPVPAPPPSQLPAPPPQPT 615
Query: 1550 XXXLHVPMPGKAQMQAPPLSAQPQTVASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1729
LHVPMPGKAQMQAPPLSAQPQTVASS
Sbjct: 616 PPALHVPMPGKAQMQAPPLSAQPQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPG 675
Query: 1730 XXXXXXXXVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQI 1909
VNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQI
Sbjct: 676 PSPARASPVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQI 735
Query: 1910 ALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVA 2089
ALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVA
Sbjct: 736 ALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVA 795
Query: 2090 AAKKLVRTVARHHXXXXXXXXXXXXXXQNRLRRIAASTAREIEYFWSN 2233
AAKKLVRTVARHH QNRLRRIAASTAREIEYFWSN
Sbjct: 796 AAKKLVRTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIEYFWSN 843
Score = 69.3 bits (168), Expect = 9e-12
Identities = 35/58 (60%), Positives = 35/58 (60%)
Frame = +3
Query: 150 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAHXXXXXXXXXXXXXXXXXXXXXXXGYPV 323
MHHGSGPQNVQHQLQRSRAFASSEGEEQPAH GYPV
Sbjct: 1 MHHGSGPQNVQHQLQRSRAFASSEGEEQPAHPNPPQSPATPFAPSASPSAPQSPGYPV 58
>ref|XP_003124552.2| PREDICTED: helicase SRCAP [Sus scrofa].
Length = 3226
Score = 142 bits (359), Expect = 6e-34
Identities = 75/158 (47%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +2
Query: 1769 LATTKSLSPVTSRSPGAAV--SALPKPQSP-AQNTAPPQDSSQDKLAEQIALENQIHQRI 1939
+A SL GA V L PQ+ N P + S ++AEQ E +I RI
Sbjct: 51 IAQDSSLDGPPGPPDGATVPLEGLSLPQAADLANKGPKWEKSHAEIAEQAKHEAEIETRI 110
Query: 1940 ADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVA 2119
A+LRKEG WSL+RLPK+ E PRPK HWDYL EEMQW++ DFAQERRWK A+K+VR V
Sbjct: 111 AELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVI 170
Query: 2120 RHHXXXXXXXXXXXXXXQNRLRRIAASTAREIEYFWSN 2233
RHH Q +LRRIA++ A+++ FWSN
Sbjct: 171 RHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSN 208
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,347,238
Number of extensions: 1904868
Number of successful extensions: 14687
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14382
Number of HSP's successfully gapped: 6
Length of query: 763
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 656
Effective length of database: 8,679,953
Effective search space: 5694049168
Effective search space used: 5694049168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0014_E03
(2290 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1467 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1467 bits (740), Expect = 0.0
Identities = 760/769 (98%)
Strand = Plus / Minus
Query: 319 cagtagcagtcccactggcggctttgtggacgctagtgtgctggtgaggcagatcagcct 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24835278 cagtagcagtcccactggcggctttgtggacgctagtgtgctggtgaggcagatcagcct 24835219
Query: 379 cagcccgtccagtggcagccactttgtgttccaggagggctcgggcctggcacagatggc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24835218 cagcccgtccagtggcagccactttgtgttccaggagggctcgggcctggcacagatggc 24835159
Query: 439 ccaggggggccaggttcagctgcagcacgcgggggctcccattgctgttcgagaacggag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24835158 ccaggggggccaggttcagctgcagcacgcgggggctcccattgctgttcgagaacggag 24835099
Query: 499 actctcacagccccacgcacagtctgggggcaccgtccgccacctgggacctcagagccc 558
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24835098 actctcacagccccacgcacagtctgggggcaccgtccaccacctgggacctcagagccc 24835039
Query: 559 tgcaggcggggccgggctgcagcccctgtccagccctggccacatcaccacaacaagcct 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24835038 tgcaggcggggccgggctgcagcccctgtccagccctggccacatcaccacaacaagcct 24834979
Query: 619 gccgccccagatcagcagcatcatccaggggcagctgatccagcagcagcaggtgctgca 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24834978 gccgccccagatcagcagcatcatccaggggcagctgatccagcagcagcaggtgctgca 24834919
Query: 679 gggaccaccgctgaccagacctctgctccctggagtcggggtcggtgtcnnnnnnncttc 738
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24834918 gggaccaccgctgaccagacctctgctccctggagtcggggtcggtgtcgggggggcttc 24834859
Query: 739 agcatttgggatgacgtccccaccgccccctaccagcccttctaggactgcagtgccccc 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24834858 agcatttgggatgacgtccccaccgccccctaccagcccttctaggactgcagtgccccc 24834799
Query: 799 tggcctgtccagccttcctctcacgtctgcggggagtgcgggggtgagaaaggctcccag 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24834798 tggcctgtccagccttcctctcacgtctgcggggagtgcgggggtgagaaaggctcccag 24834739
Query: 859 gaagttggaggagatccccccagcctcccaggagctggctcagatgcggaaacagtgcct 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24834738 gaagttggaggagatccccccagcctcccaggagctggctcagatgcggaaacagtgcct 24834679
Query: 919 ggactatcactacagagagatggaggcgctgaaggaggccttcaaggagtatttgatcga 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24834678 ggactatcactacagagagatggaggcgctgaaggaggccttcaaggagtatttgatcga 24834619
Query: 979 actgttcttcttgcaacaccttcaagggaacatgatggatttcctagcttttaagaagaa 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24834618 actgttcttcttgcaacaccttcaagggaacatgatggatttcctagcttttaagaagaa 24834559
Query: 1039 acattacgccccgttacaagcttatcttaggcagaatgatttggacctt 1087
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24834558 acattatgccccgttacaagcttatcttaggcagaatgatttggacctt 24834510
Score = 589 bits (297), Expect = e-165
Identities = 297/297 (100%)
Strand = Plus / Minus
Query: 1620 agacggtggcatcatcgagaccacctgtggaccccgcccagccctgtcctcggcccccgc 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24816881 agacggtggcatcatcgagaccacctgtggaccccgcccagccctgtcctcggcccccgc 24816822
Query: 1680 cgtcctcttctacctcatccattgctcctgcgagtggctcaggcccgggaccttcaccgg 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24816821 cgtcctcttctacctcatccattgctcctgcgagtggctcaggcccgggaccttcaccgg 24816762
Query: 1740 cacgggcctccccagtgaacagaccctccttggccaccaccaagtcactgtctccagtca 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24816761 cacgggcctccccagtgaacagaccctccttggccaccaccaagtcactgtctccagtca 24816702
Query: 1800 cctcccgctcccctggggcggctgtgtcggcactgccaaaaccacagagcccggctcaga 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24816701 cctcccgctcccctggggcggctgtgtcggcactgccaaaaccacagagcccggctcaga 24816642
Query: 1860 atactgccccaccccaggacagttctcaggataagctggcagaacaaatagcactgg 1916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24816641 atactgccccaccccaggacagttctcaggataagctggcagaacaaatagcactgg 24816585
Score = 509 bits (257), Expect = e-141
Identities = 260/261 (99%)
Strand = Plus / Minus
Query: 1232 gcaggaggaatgcctcccgcccctcaggctgcttagctcgcgggacagaagcaaagccag 1291
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 24819273 gcaggaggaatgcctcccgcccctcaggctgctcagctcgcgggacagaagcaaagccag 24819214
Query: 1292 caacagtatgacccctccacggggcctccggtgcagaatgccgccagcttgcacacgcct 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24819213 caacagtatgacccctccacggggcctccggtgcagaatgccgccagcttgcacacgcct 24819154
Query: 1352 ccgccacagctccccggcaggctgcccgcagccggcctccccaccgtgcccctgccgccg 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24819153 ccgccacagctccccggcaggctgcccgcagccggcctccccaccgtgcccctgccgccg 24819094
Query: 1412 gcgctgcagttctcccagcagcctcagatggtagagccacagccccagctccagatcccg 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24819093 gcgctgcagttctcccagcagcctcagatggtagagccacagccccagctccagatcccg 24819034
Query: 1472 gtgaagacgcagcagccgaat 1492
|||||||||||||||||||||
Sbjct: 24819033 gtgaagacgcagcagccgaat 24819013
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Minus
Query: 115 ggagaacattaagttggataaaaaggagggcgataatgcaccatggcagcggccctcaga 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24835798 ggagaacattaagttggataaaaaggagggcgataatgcaccatggcagcggccctcaga 24835739
Query: 175 atgtccagcaccaactgcagaggtccagggccttcgccagcagcgaaggagaagagcagc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24835738 atgtccagcaccaactgcagaggtccagggccttcgccagcagcgaaggagaagagcagc 24835679
Query: 235 cggcccacccaaacccaccccagtcccccgccacgccctttgcgccatcggccagcccat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24835678 cggcccacccaaacccaccccagtcccccgccacgccctttgcgccatcggccagcccat 24835619
Query: 295 cggcaccccagtcccctggttacccagt 322
||||||||||||||||||||||||||||
Sbjct: 24835618 cggcaccccagtcccctggttacccagt 24835591
Score = 371 bits (187), Expect = 1e-99
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 1915 ggaaaaccagatccatcaacgaatagctgatttaaggaaggaaggcctgtggtctctcag 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24814997 ggaaaaccagatccatcaacgaatagctgatttaaggaaggaaggcctgtggtctctcag 24814938
Query: 1975 gcggctgccgaaactgcaggaggccccacggcccaaatcgcattgggactacctgctgga 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24814937 gcggctgccgaaactgcaggaggccccacggcccaaatcgcattgggactacctgctgga 24814878
Query: 2035 ggagatgcagtggatggccacggactttgcccaggagaggaggtggaaggtggccgctgc 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24814877 ggagatgcagtggatggccacggactttgcccaggagaggaggtggaaggtggccgctgc 24814818
Query: 2095 caagaag 2101
|||||||
Sbjct: 24814817 caagaag 24814811
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 2100 agcttgtcagaactgtagcacgtcatcatgaagaaaagaagcttcgtgaggaaaggggaa 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24812990 agcttgtcagaactgtagcacgtcatcatgaagaaaagaagcttcgtgaggaaaggggaa 24812931
Query: 2160 agaaagaggaacagaaccgactaagacgaatagctgcgtcaacggctagagaaatagaat 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24812930 agaaagaggaacagaaccgactaagacgaatagctgcgtcaacggctagagaaatagaat 24812871
Query: 2220 atttttggtcaaatattgaacaggt 2244
|||||||||||||||||||||||||
Sbjct: 24812870 atttttggtcaaatattgaacaggt 24812846
Score = 202 bits (102), Expect = 6e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 1 gcaggcgcgccgccgcttcctccgcccaggtcccggatgtttcgagcggaacggcgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24847538 gcaggcgcgccgccgcttcctccgcccaggtcccggatgtttcgagcggaacggcgcctc 24847479
Query: 61 caggacccagaccccagccccagttcgacgcggaggagcagg 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24847478 caggacccagaccccagccccagttcgacgcggaggagcagg 24847437
Score = 178 bits (90), Expect = 9e-42
Identities = 93/94 (98%)
Strand = Plus / Minus
Query: 1143 agcagcaagcccttgcagggaccctggtggcaggggctggaagtacagtagaaacggacc 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24821367 agcagcaagcccttgcagggaccctggtggcaggggctggaagtacagtagaaacggacc 24821308
Query: 1203 cctttaagaggcagcaggcgggacccccagcagg 1236
|||||||||||||||||||||||||||| |||||
Sbjct: 24821307 cctttaagaggcagcaggcgggacccccggcagg 24821274
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1556 gccctccacgtcccaatgcccgggaaggcacagatgcaggccccaccgctctcagctcag 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24818949 gccctccacgtcccaatgcccgggaaggcacagatgcaggccccaccgctctcagctcag 24818890
Query: 1616 ccgcag 1621
||||||
Sbjct: 24818889 ccgcag 24818884
Score = 65.9 bits (33), Expect = 9e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 2241 aggtcgtggaaataaaactacaagtagaattag 2273
|||||||||||||||||||||||||||||||||
Sbjct: 24812064 aggtcgtggaaataaaactacaagtagaattag 24812032
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,074,811
Number of extensions: 526
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 10
Length of query: 2290
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2268
Effective length of database: 2,808,408,574
Effective search space: 6369470645832
Effective search space used: 6369470645832
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)