Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0022_H06
(1252 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230825.1| glutaredoxin 3 [Sus scrofa]. 627 e-180
Alignment gi|XP_001929028.1| PREDICTED: glutaredoxin-related protein 5, m... 100 1e-21
Alignment gi|NP_999478.1| thioredoxin [Sus scrofa]. 54 1e-07
Alignment gi|XP_003361328.1| PREDICTED: thioredoxin domain-containing pro... 48 1e-05
>ref|NP_001230825.1| glutaredoxin 3 [Sus scrofa].
Length = 334
Score = 627 bits (1616), Expect = e-180
Identities = 313/323 (96%), Positives = 313/323 (96%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA
Sbjct: 12 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 71
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 425
VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHA EHLKED
Sbjct: 72 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHASSSSFPSGGSEHLKED 131
Query: 426 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 605
LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK
Sbjct: 132 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 191
Query: 606 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 785
TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 192 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 251
Query: 786 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 965
KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV
Sbjct: 252 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 311
Query: 966 GGLDIVKGLKENGELLPILKGEN 1034
GGLDIVKGLKENGELLPILKGEN
Sbjct: 312 GGLDIVKGLKENGELLPILKGEN 334
>ref|XP_001929028.1| PREDICTED: glutaredoxin-related protein 5, mitochondrial-like [Sus
scrofa].
Length = 154
Score = 100 bits (250), Expect = 1e-21
Identities = 45/97 (46%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Frame = +3
Query: 738 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 914
E L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D ++RQG+K
Sbjct: 40 EHLDTLVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKD 99
Query: 915 YSNWPTYPQLYVKGELVGGLDIVKGLKENGELLPILK 1025
YSNWPT PQ+Y+ GE VGG DI+ + +NG+L+ LK
Sbjct: 100 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 136
Score = 91.3 bits (225), Expect = 1e-18
Identities = 35/80 (43%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Frame = +3
Query: 468 MLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTYSNWPTYPQPYV 644
++F+KGTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K YSNWPT PQ Y+
Sbjct: 52 VVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYL 111
Query: 645 SGELIGGLDIIKELEASKEL 704
+GE +GG DI+ ++ + +L
Sbjct: 112 NGEFVGGCDILLQMHQNGDL 131
>ref|NP_999478.1| thioredoxin [Sus scrofa].
Length = 105
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/96 (27%), Positives = 49/96 (51%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V ++ S F+E L + L+VV F A W C + L++++ V F++++ +
Sbjct: 2 VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPEL 353
+V+ + + +PTF FFK Q + GA+ +L
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
>ref|XP_003361328.1| PREDICTED: thioredoxin domain-containing protein 2-like [Sus
scrofa].
Length = 483
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +3
Query: 93 FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 272
F+ L+ + L+ V F W C M + L+ +H V F++++A+ E+ +
Sbjct: 389 FDVALKEAGERLVAVDFSTTWCRPCRAMKPIFRSLSVKHQDVLFLEVDADECEELVKDLK 448
Query: 273 ISSVPTFLFFKNSQSIDRLDGA 338
I +PTF F+K + + GA
Sbjct: 449 IVCIPTFHFYKKEEKVGEFSGA 470
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,946,888
Number of extensions: 879846
Number of successful extensions: 2597
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2584
Number of HSP's successfully gapped: 5
Length of query: 417
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,829,335
Effective search space: 2790069860
Effective search space used: 2790069860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA THY01_0022_H06
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0022_H06
(1252 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030273.1| glutaredoxin-3 [Bos taurus]. 602 e-172
Alignment gi|NP_001093773.1| glutaredoxin-related protein 5, mitochondria... 100 2e-21
Alignment gi|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus]. 55 1e-07
Alignment gi|NP_776393.1| thioredoxin [Bos taurus]. 54 3e-07
>ref|NP_001030273.1| glutaredoxin-3 [Bos taurus].
Length = 334
Score = 602 bits (1553), Expect = e-172
Identities = 302/323 (93%), Positives = 306/323 (94%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
VVEVGS+GQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEH QVSFVKLEAEA
Sbjct: 12 VVEVGSSGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEA 71
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 425
VPEVSEKY ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA EH KED
Sbjct: 72 VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFSPSGSEHPKED 131
Query: 426 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 605
LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK
Sbjct: 132 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 191
Query: 606 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 785
TYS+WPTYPQ YVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 192 TYSSWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 251
Query: 786 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 965
KGNKQEAKCGFSRQILEILNSTG++YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELV
Sbjct: 252 KGNKQEAKCGFSRQILEILNSTGIEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 311
Query: 966 GGLDIVKGLKENGELLPILKGEN 1034
GGLDIVK LKENGELLPILKGEN
Sbjct: 312 GGLDIVKELKENGELLPILKGEN 334
>ref|NP_001093773.1| glutaredoxin-related protein 5, mitochondrial [Bos taurus].
Length = 158
Score = 100 bits (250), Expect = 2e-21
Identities = 45/97 (46%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Frame = +3
Query: 738 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 914
E L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D ++RQG+K
Sbjct: 44 EHLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKD 103
Query: 915 YSNWPTYPQLYVKGELVGGLDIVKGLKENGELLPILK 1025
YSNWPT PQ+Y+ GE VGG DI+ + +NG+L+ LK
Sbjct: 104 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 140
Score = 91.7 bits (226), Expect = 1e-18
Identities = 38/93 (40%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = +3
Query: 429 SLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLK 605
S L L ++F+KGTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K
Sbjct: 43 SEHLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIK 102
Query: 606 TYSNWPTYPQPYVSGELIGGLDIIKELEASKEL 704
YSNWPT PQ Y++GE +GG DI+ ++ + +L
Sbjct: 103 DYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 135
>ref|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus].
Length = 289
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V VGS F+ L L VV F C ++ + ++ ++PQ F++++
Sbjct: 4 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 63
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 374
+ IS+ PTFLFF+N ID+ GA A L +K+++H
Sbjct: 64 CQGTAATNKISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106
>ref|NP_776393.1| thioredoxin [Bos taurus].
Length = 105
Score = 53.9 bits (128), Expect = 3e-07
Identities = 26/96 (27%), Positives = 49/96 (51%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V ++ S F+E L + L+VV F A W C + L++++ V F++++ +
Sbjct: 2 VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPEL 353
+V+ + + +PTF FFK Q + GA+ +L
Sbjct: 62 CQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,676,932
Number of extensions: 1255236
Number of successful extensions: 4051
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4036
Number of HSP's successfully gapped: 5
Length of query: 417
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,207,134
Effective search space: 4432625808
Effective search space used: 4432625808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0022_H06
(1252 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186797.1| glutaredoxin-3 [Homo sapiens]. 590 e-169
Alignment gi|NP_006532.2| glutaredoxin-3 [Homo sapiens]. 590 e-169
Alignment gi|NP_057501.2| glutaredoxin-related protein 5, mitochondrial p... 102 7e-22
Alignment gi|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens]. 56 6e-08
Alignment gi|NP_003320.2| thioredoxin [Homo sapiens]. 54 4e-07
Alignment gi|NP_115619.4| thioredoxin domain-containing protein 2 isoform... 53 5e-07
Alignment gi|NP_001091999.1| thioredoxin domain-containing protein 2 isof... 53 5e-07
>ref|NP_001186797.1| glutaredoxin-3 [Homo sapiens].
Length = 335
Score = 590 bits (1521), Expect = e-169
Identities = 295/323 (91%), Positives = 304/323 (94%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V EVGSAGQFEELLRL+AKSLLVVHFWAPWAPQCAQMN+VMAELAKE PQVSFVKLEAE
Sbjct: 13 VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG 72
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 425
VPEVSEKY ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA EHLKED
Sbjct: 73 VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKED 132
Query: 426 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 605
L+LRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLK
Sbjct: 133 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 192
Query: 606 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 785
YS+WPTYPQ YVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 193 AYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFM 252
Query: 786 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 965
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELV
Sbjct: 253 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 312
Query: 966 GGLDIVKGLKENGELLPILKGEN 1034
GGLDIVK LKENGELLPIL+GEN
Sbjct: 313 GGLDIVKELKENGELLPILRGEN 335
>ref|NP_006532.2| glutaredoxin-3 [Homo sapiens].
Length = 335
Score = 590 bits (1521), Expect = e-169
Identities = 295/323 (91%), Positives = 304/323 (94%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V EVGSAGQFEELLRL+AKSLLVVHFWAPWAPQCAQMN+VMAELAKE PQVSFVKLEAE
Sbjct: 13 VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG 72
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 425
VPEVSEKY ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA EHLKED
Sbjct: 73 VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKED 132
Query: 426 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 605
L+LRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLK
Sbjct: 133 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 192
Query: 606 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 785
YS+WPTYPQ YVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 193 AYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFM 252
Query: 786 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 965
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELV
Sbjct: 253 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 312
Query: 966 GGLDIVKGLKENGELLPILKGEN 1034
GGLDIVK LKENGELLPIL+GEN
Sbjct: 313 GGLDIVKELKENGELLPILRGEN 335
>ref|NP_057501.2| glutaredoxin-related protein 5, mitochondrial precursor [Homo
sapiens].
Length = 157
Score = 102 bits (254), Expect = 7e-22
Identities = 46/97 (47%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Frame = +3
Query: 738 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 914
E+L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D E+RQG+K
Sbjct: 43 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 102
Query: 915 YSNWPTYPQLYVKGELVGGLDIVKGLKENGELLPILK 1025
YSNWPT PQ+Y+ GE VGG DI+ + +NG+L+ LK
Sbjct: 103 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 139
Score = 92.8 bits (229), Expect = 6e-19
Identities = 38/91 (41%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Frame = +3
Query: 435 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTY 611
+L L ++F+KGTP++P+CGFS +V+IL H ++ ++++++ D E+RQG+K Y
Sbjct: 44 QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 103
Query: 612 SNWPTYPQPYVSGELIGGLDIIKELEASKEL 704
SNWPT PQ Y++GE +GG DI+ ++ + +L
Sbjct: 104 SNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 134
>ref|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens].
Length = 289
Score = 56.2 bits (134), Expect = 6e-08
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V VGS F+ L L VV F C ++ + ++ ++PQ F++++
Sbjct: 4 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 63
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 374
+ IS+ PTFLFF+N ID+ GA A L +K+++H
Sbjct: 64 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106
>ref|NP_003320.2| thioredoxin [Homo sapiens].
Length = 105
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V ++ S F+E L L+VV F A W C + L++++ V F++++ +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPEL 353
+V+ + + +PTF FFK Q + GA+ +L
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
>ref|NP_115619.4| thioredoxin domain-containing protein 2 isoform 1 [Homo sapiens].
Length = 486
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +3
Query: 81 SAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVS 260
S FE L+ + L+ V F A W C + L+ +H V F++++A+ EV
Sbjct: 388 SKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVV 447
Query: 261 EKYGISSVPTFLFFKNSQSIDRLDGA 338
+ I VPTF F+K + +D L GA
Sbjct: 448 RECAIMCVPTFQFYKKEEKVDELCGA 473
>ref|NP_001091999.1| thioredoxin domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 553
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +3
Query: 81 SAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVS 260
S FE L+ + L+ V F A W C + L+ +H V F++++A+ EV
Sbjct: 455 SKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVV 514
Query: 261 EKYGISSVPTFLFFKNSQSIDRLDGA 338
+ I VPTF F+K + +D L GA
Sbjct: 515 RECAIMCVPTFQFYKKEEKVDELCGA 540
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,511,853
Number of extensions: 1215906
Number of successful extensions: 3981
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3960
Number of HSP's successfully gapped: 8
Length of query: 417
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,835,944
Effective search space: 4628814528
Effective search space used: 4628814528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0022_H06
(1252 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protei... 595 e-170
Alignment gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ... 52 1e-06
Alignment gi|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein ... 49 8e-06
>ref|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protein (PKC-interacting
cousin of thioredoxin) (PKCq-interacting protein)
(PKC-theta-interacting protein) [Canis familiaris].
Length = 333
Score = 595 bits (1533), Expect = e-170
Identities = 297/323 (91%), Positives = 303/323 (93%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
VVEVGSA QFEELLRLRAKSL+VVHFWAPWAPQC QMNDVMAELAKEHPQVSFVKLEAEA
Sbjct: 11 VVEVGSAPQFEELLRLRAKSLVVVHFWAPWAPQCVQMNDVMAELAKEHPQVSFVKLEAEA 70
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 425
VPEVSEKY ISSVPTFL FKNSQ IDRLDGAHAPELTKKVQRHA EH KED
Sbjct: 71 VPEVSEKYEISSVPTFLLFKNSQKIDRLDGAHAPELTKKVQRHASSGSFPPSTNEHPKED 130
Query: 426 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 605
L +RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK
Sbjct: 131 LHVRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 190
Query: 606 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 785
TYSNWPTYPQ YVSGELIGGLDIIKELEAS ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 191 TYSNWPTYPQLYVSGELIGGLDIIKELEASDELDTICPKAPKLEERLKVLTNKASVMLFM 250
Query: 786 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 965
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV
Sbjct: 251 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 310
Query: 966 GGLDIVKGLKENGELLPILKGEN 1034
GGLDIVK LK+NGELLP+LKGEN
Sbjct: 311 GGLDIVKELKDNGELLPVLKGEN 333
>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
(Surface associated sulphydryl protein) (SASP) [Canis
familiaris].
Length = 219
Score = 52.0 bits (123), Expect = 1e-06
Identities = 24/87 (27%), Positives = 44/87 (50%)
Frame = +3
Query: 93 FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 272
F+E L L+VV F A W C + L++++ V F++++ + +V+ +
Sbjct: 125 FQEALNSAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 184
Query: 273 ISSVPTFLFFKNSQSIDRLDGAHAPEL 353
+ +PTF FFK Q + GA+ +L
Sbjct: 185 VKCMPTFQFFKKGQKVGEFSGANKEKL 211
>ref|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein 1 (32 kDa
thioredoxin-related protein) [Canis familiaris].
Length = 267
Score = 49.3 bits (116), Expect = 8e-06
Identities = 21/70 (30%), Positives = 40/70 (57%)
Frame = +3
Query: 165 CAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHA 344
C ++ + ++ ++PQ F++++ + IS+ PTFLFF+N ID+ GA A
Sbjct: 12 CLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADA 71
Query: 345 PELTKKVQRH 374
L +K+++H
Sbjct: 72 VGLEEKIKQH 81
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,515,903
Number of extensions: 1250709
Number of successful extensions: 4152
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4138
Number of HSP's successfully gapped: 3
Length of query: 417
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 312
Effective length of database: 15,374,224
Effective search space: 4796757888
Effective search space used: 4796757888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0022_H06
(1252 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075629.2| glutaredoxin-3 [Mus musculus]. 593 e-169
Alignment gi|NP_082695.1| glutaredoxin-related protein 5, mitochondrial [... 102 6e-22
Alignment gi|NP_058072.2| thioredoxin-like protein 1 [Mus musculus]. 56 5e-08
Alignment gi|NP_001139474.1| thioredoxin domain-containing protein 2 isof... 56 7e-08
Alignment gi|NP_705739.2| thioredoxin domain-containing protein 2 isoform... 56 7e-08
Alignment gi|NP_035790.1| thioredoxin [Mus musculus]. 51 2e-06
>ref|NP_075629.2| glutaredoxin-3 [Mus musculus].
Length = 337
Score = 593 bits (1528), Expect = e-169
Identities = 294/323 (91%), Positives = 304/323 (94%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
VVEVGSA QFEELLRL+ KSLLVVHFWAPWAPQC QMNDVMAELAKEHP VSFVKLEAEA
Sbjct: 15 VVEVGSAQQFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEA 74
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 425
VPEVSEKY ISSVPTFLFFKNSQ +DRLDGAHAPELTKKVQRH EHLKED
Sbjct: 75 VPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNEHLKED 134
Query: 426 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 605
LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLK
Sbjct: 135 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 194
Query: 606 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 785
TYSNWPTYPQ YVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 195 TYSNWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFM 254
Query: 786 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 965
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLKT+SNWPTYPQLYV+G+LV
Sbjct: 255 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLV 314
Query: 966 GGLDIVKGLKENGELLPILKGEN 1034
GGLDIVK LK+NGELLPILKGEN
Sbjct: 315 GGLDIVKELKDNGELLPILKGEN 337
>ref|NP_082695.1| glutaredoxin-related protein 5, mitochondrial [Mus musculus].
Length = 152
Score = 102 bits (254), Expect = 6e-22
Identities = 46/97 (47%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Frame = +3
Query: 738 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 914
E+L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D E+RQG+K
Sbjct: 39 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 98
Query: 915 YSNWPTYPQLYVKGELVGGLDIVKGLKENGELLPILK 1025
YSNWPT PQ+Y+ GE VGG DI+ + +NG+L+ LK
Sbjct: 99 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 135
Score = 92.8 bits (229), Expect = 5e-19
Identities = 38/91 (41%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Frame = +3
Query: 435 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTY 611
+L L ++F+KGTP++P+CGFS +V+IL H ++ ++++++ D E+RQG+K Y
Sbjct: 40 QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 99
Query: 612 SNWPTYPQPYVSGELIGGLDIIKELEASKEL 704
SNWPT PQ Y++GE +GG DI+ ++ + +L
Sbjct: 100 SNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 130
>ref|NP_058072.2| thioredoxin-like protein 1 [Mus musculus].
Length = 289
Score = 56.2 bits (134), Expect = 5e-08
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +3
Query: 66 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 245
V VGS F+ L L VV F C ++ + ++ ++PQ F++++
Sbjct: 4 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 63
Query: 246 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 374
+ IS+ PTFLFF+N ID+ GA A L +K+++H
Sbjct: 64 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106
>ref|NP_001139474.1| thioredoxin domain-containing protein 2 isoform 1 [Mus musculus].
Length = 550
Score = 55.8 bits (133), Expect = 7e-08
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +3
Query: 90 QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 269
+FEE+L+ + L+ V F A W C M + L+ +H V F++++ E ++ +
Sbjct: 455 EFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDC 514
Query: 270 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKV 365
I +PTF F+KN + + GA +L + +
Sbjct: 515 EIFHLPTFQFYKNEEKVGEFSGALVGKLERSI 546
>ref|NP_705739.2| thioredoxin domain-containing protein 2 isoform 2 [Mus musculus].
Length = 543
Score = 55.8 bits (133), Expect = 7e-08
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +3
Query: 90 QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 269
+FEE+L+ + L+ V F A W C M + L+ +H V F++++ E ++ +
Sbjct: 448 EFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDC 507
Query: 270 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKV 365
I +PTF F+KN + + GA +L + +
Sbjct: 508 EIFHLPTFQFYKNEEKVGEFSGALVGKLERSI 539
>ref|NP_035790.1| thioredoxin [Mus musculus].
Length = 105
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = +3
Query: 75 VGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPE 254
+ S F+E L L+VV F A W C + L ++ V F++++ + +
Sbjct: 5 IESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQD 64
Query: 255 VSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHA 377
V+ + +PTF F+K Q + GA+ +L + +A
Sbjct: 65 VAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,381,509
Number of extensions: 1017157
Number of successful extensions: 3219
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3203
Number of HSP's successfully gapped: 7
Length of query: 417
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 313
Effective length of database: 12,493,815
Effective search space: 3910564095
Effective search space used: 3910564095
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0022_H06
(1252 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 466 e-128
Sscrofa_ChrX 198 5e-48
>Sscrofa_Chr14
|| Length = 153851969
Score = 466 bits (235), Expect = e-128
Identities = 241/243 (99%)
Strand = Plus / Plus
Query: 989 actaaaagaaaacggtgagctgctgcctatcctgaaaggagaaaactaatcagtggggga 1048
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 151224529 actaaaagaaaacggtgagctgctgcctatcctgaaaggagaaaactaatcagtggggca 151224588
Query: 1049 cttggtgcccagctactgcaggaggccgtcactccgctgagtgaccagtccctgaggtgg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151224589 cttggtgcccagctactgcaggaggccgtcactccgctgagtgaccagtccctgaggtgg 151224648
Query: 1109 ccgaggagtaggagatgcttatccccggttacgctggtgtatttctcgaggctgcgctaa 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151224649 ccgaggagtaggagatgcttatccccggttacgctggtgtatttctcgaggctgcgctaa 151224708
Query: 1169 gtgagcggatgcgacgtgttttccacccaaatgagaacacaataaacatcttcaagttca 1228
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 151224709 gtgagcggatgcgacgtgttttccacccaaatgagaacgcaataaacatcttcaagttca 151224768
Query: 1229 att 1231
|||
Sbjct: 151224769 att 151224771
Score = 400 bits (202), Expect = e-109
Identities = 205/206 (99%)
Strand = Plus / Plus
Query: 304 agaattctcagagcattgaccggttagatggtgcacatgccccagagttgaccaaaaagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151206713 agaattctcagagcattgaccggttagatggtgcacatgccccagagttgaccaaaaagg 151206772
Query: 364 ttcagcgacatgcgtccagcagctctttcccatctggcggtagcgagcacctgaaagaag 423
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 151206773 ttcagcgacatgcgtccaggagctctttcccatctggcggtagcgagcacctgaaagaag 151206832
Query: 424 acctcagccttcgcctgaagaagctgacccacgctgccccctgcatgctgttcatgaagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151206833 acctcagccttcgcctgaagaagctgacccacgctgccccctgcatgctgttcatgaagg 151206892
Query: 484 gaacaccccaggagccgcgctgcggt 509
||||||||||||||||||||||||||
Sbjct: 151206893 gaacaccccaggagccgcgctgcggt 151206918
Score = 339 bits (171), Expect = 2e-90
Identities = 174/175 (99%)
Strand = Plus / Plus
Query: 507 ggtttcagcaagcagatggtggaaattcttaacaaacataatatccagtttagcagtttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151212680 ggtttcagcaagcagatggtggaaattcttaacaaacataatatccagtttagcagtttt 151212739
Query: 567 gatatcttctcagatgaagaagttcgccaaggcctcaaaacctattccaattggcccacc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151212740 gatatcttctcagatgaagaagttcgccaaggcctcaaaacctattccaattggcccacc 151212799
Query: 627 tacccccagccctatgtttctggagagctcataggaggacttgatataatcaagg 681
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151212800 tacccccagctctatgtttctggagagctcataggaggacttgatataatcaagg 151212854
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 122 gtccctgctggtggtccatttctgggcaccatgggccccacagtgtgctcagatgaacga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151196177 gtccctgctggtggtccatttctgggcaccatgggccccacagtgtgctcagatgaacga 151196236
Query: 182 tgtgatggccgagttagccaaggagcacccgcaagtttcctttgtgaag 230
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151196237 tgtgatggccgagttagccaaggagcacccgcaagtttcctttgtgaag 151196285
Score = 170 bits (86), Expect = 1e-39
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 894 gtccggcaggggttgaaaacctactccaactggccgacgtaccctcagctgtatgtgaaa 953
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151219960 gtccgacagggattgaaaacctactccaactggccgacgtaccctcagctgtatgtgaaa 151220019
Query: 954 ggggagctggtcggaggcctggatattgttaagg 987
||||||||||||||||||||||||||||||||||
Sbjct: 151220020 ggggagctggtcggaggcctggatattgttaagg 151220053
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 228 aagttggaggctgaagctgttcctgaagtgtctgaaaaatacggaattagttctgtaccc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151205897 aagttggaggctgaagctgttcctgaagtgtctgaaaaatacggaattagttctgtaccc 151205956
Query: 288 acctttctgtttttcaag 305
||||||||||||||||||
Sbjct: 151205957 acctttctgtttttcaag 151205974
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 679 aggagctagaagcatctaaagaactagatacaatttgccccaaagctcccaaattagagg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151213088 aggagctagaagcatctaaagaactagatacaatttgccccaaagctcccaaattagagg 151213147
Query: 739 aaagg 743
|||||
Sbjct: 151213148 aaagg 151213152
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 741 aggctcaaagtactgacaaataaagcttctgtgatgctctttatgaagggaaacaaacag 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151215155 aggctcaaagtactgacaaataaagcttctgtgatgctctttatgaagggaaacaaacag 151215214
Query: 801 g 801
|
Sbjct: 151215215 g 151215215
Score = 109 bits (55), Expect = 4e-21
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 65 tgtggtggaggtcggctccgccgggcagtttgaggagctgctgcgcctaagagccaagt 123
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 151189333 tgtggtggaggtcggctccgccgggcagtttgaggagctgctgcgcctcagagccaagt 151189391
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 799 aggaagccaagtgtggtttcagcagacaaatcctggaaattctaaatagtactgg 853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151217062 aggaagccaagtgtggtttcagcagacaaatcctggaaattctaaatagtactgg 151217116
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 853 gtgtcgactacgagacgttcgacatactggaggatgaggaagt 895
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151219828 gtgtcgactacgagacgttcgacatactggaggatgaggaagt 151219870
>Sscrofa_ChrX
|| Length = 144288218
Score = 198 bits (100), Expect = 5e-48
Identities = 210/240 (87%), Gaps = 5/240 (2%)
Strand = Plus / Minus
Query: 997 aaaacggtgagctgctgcctatcctgaaaggagaaaactaatcagtgggggacttggtgc 1056
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 51460448 aaaatggtgagctgctgcctatcctgaaaggagaaaactaatcagtgtgggacttagtgc 51460389
Query: 1057 ccagctactgcagg-aggccgtcactccgctgagtga-ccagtcc-ctgaggtggccgag 1113
|||||||||||||| ||| | ||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 51460388 ccagctactgcaggaaggacctcactccactgagtgatccagtcctctgaggtggccgag 51460329
Query: 1114 gagtaggagatgcttatccccggtt-acgc-tggtgtatttctcgaggctgcgctaagtg 1171
|||||| ||||||| ||||| |||| | || | ||||||||| | |||||| || |||||
Sbjct: 51460328 gagtagaagatgctcatccctggttaatgctttgtgtatttcacaaggctgtgccaagtg 51460269
Query: 1172 agcggatgcgacgtgttttccacccaaatgagaacacaataaacatcttcaagttcaatt 1231
| | ||| ||| | ||||||||| |||| ||||| ||||||||| ||||||||||||||
Sbjct: 51460268 aatgtatgtgactttttttccaccaaaattagaactcaataaacaccttcaagttcaatt 51460209
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,135,283
Number of extensions: 193
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 13
Length of query: 1252
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1231
Effective length of database: 2,808,413,156
Effective search space: 3457156595036
Effective search space used: 3457156595036
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)