Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0039_B08
(1257 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 215 6e-56
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 83 4e-16
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 75 2e-13
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 70 4e-12
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 70 4e-12
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 61 2e-09
Alignment gi|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus]. 54 2e-07
Alignment gi|NP_001180225.1| MHC class I heavy chain [Bos taurus]. 50 5e-06
Alignment gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp... 50 5e-06
Alignment gi|NP_001099086.1| non-classical MHC class I antigen [Bos tauru... 49 7e-06
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 215 bits (548), Expect = 6e-56
Identities = 141/390 (36%), Positives = 201/390 (51%), Gaps = 19/390 (4%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDL-------------GWGPGVEVVVSSAPKT 143
++D S++ + ++S+ TEDTA YYCA WG G+ V VSS +T
Sbjct: 89 TKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCACSSERNYIDAWGQGLLVTVSSESET 148
Query: 144 APSVYPLAPCGRDVSGPNVALGCLASSYFPE-PVTVTWNSGALTSGVHTFPSVLQPSGLY 320
+PS++PL+ D +G V +GCL +FP P++VTWN + V FP+VL S LY
Sbjct: 149 SPSIFPLSLGNNDPAG-QVVIGCLVQGFFPSAPLSVTWNQNGDSVSVRNFPAVLAGS-LY 206
Query: 321 SLSSMVTVPASSL-SSKSYTCNVNHPATTTKVDKRVGIHQPQTCPICPGCEVAGPSVFIF 497
++SS +T+PAS +S TC V H + +K I Q + P CE PS+ +
Sbjct: 207 TMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPCIIQDSSSCCVPNCE---PSLSVQ 263
Query: 498 PPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTYRVV 677
PP +D L++ +TC + + K F+W G + + PK + Y V
Sbjct: 264 PPALED-LLLGSNASLTCTLSGL-KSAEGASFTWNPTGGKT-AVQGSPKRDSC-GCYSVS 319
Query: 678 SVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSRSK- 854
SVLP W G+ F C V + + + +T TI K +G + PQV+ LPPP+EEL+ ++
Sbjct: 320 SVLPGCADPWNSGQTFSCSVTHPESKSSLTATIKKDLGNTFRPQVHLLPPPSEELALNEL 379
Query: 855 VTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVD---GTFFLYSKLAVDKARW 1025
VTLTCLV GF P ++ V W Q P Y T P + TF + S L VD W
Sbjct: 380 VTLTCLVRGFSPKEVLVRWLQGNQELPREKYLTWGPLPEAGQSVTTFAVTSVLRVDAEVW 439
Query: 1026 DHGDKFECAVMHEALHNHYTQKSISKTQGK 1115
GD F C V HEAL +TQK+I + GK
Sbjct: 440 KQGDTFSCMVGHEALPLAFTQKTIDRLAGK 469
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 83.2 bits (204), Expect = 4e-16
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLG-----WGPGVEVVVSSAPKTAPSVYPLA 167
S S NTA + +NSL+ ED A Y+CA D +G G + V PK+ PSV
Sbjct: 83 SGSKSGNTATLTINSLQAEDEADYFCAAGDYSVNTAVFGGGTTLTVLGQPKSPPSVTLFP 142
Query: 168 PCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVT 341
P +++G L CL S ++P VTV W + +T V T + Q + Y+ SS ++
Sbjct: 143 PSTEELNGNKATLVCLISDFYPGSVTVVWKADGSTITRNVETTRASKQSNSKYAASSYLS 202
Query: 342 VPASSLSSK-SYTCNVNHPATT 404
+ +S SK SY+C V H +T
Sbjct: 203 LTSSDWKSKGSYSCEVTHEGST 224
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 771 TISKAIGQSREPQVYTL-PPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTY 947
T +GQ + P TL PP EEL+ +K TL CL+ FYP + V WK++G N
Sbjct: 124 TTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGSVTVVWKADGSTITRNV- 182
Query: 948 RTTPPQQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
TT + + + S L++ + W + C V HE
Sbjct: 183 ETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHE 221
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 74.7 bits (182), Expect = 2e-13
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLG--------WGPGVEVVVSSAPKTAPSVY 158
S S TA + + + ED A YYC D+ +G G V V PK+ PSV
Sbjct: 81 SGSKSDTTATLTIRGAQAEDEADYYCQSADISGPVSLCDLFGGGTRVTVLGQPKSPPSVT 140
Query: 159 PLAPCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSS 332
P ++S L CL S ++P VTV W + +T V T + Q + Y+ SS
Sbjct: 141 LFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGSTITRNVKTTRASKQSNSKYAASS 200
Query: 333 MVTVPASSLSSK-SYTCNVNHPATT 404
+++ S SK SY+C V H +T
Sbjct: 201 YLSLTDSDWKSKGSYSCEVTHEGST 225
Score = 62.4 bits (150), Expect = 8e-10
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSREPQVYTL-PPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P TL PP EELS +K TL CL+ FYP + V WK++G N +TT
Sbjct: 130 LGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGSTITRNV-KTTRA 188
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ + W + C V HE
Sbjct: 189 SKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHE 222
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 70.1 bits (170), Expect = 4e-12
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Frame = +3
Query: 39 MNSLRTEDTARYYCAGRD-----LGWGPGVEVVVSSAPKTAPSVYPLAPCGRDVSGPNVA 203
++SL+ +D A YYC R+ G G VE+ S A PSV+ P + V+
Sbjct: 95 ISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAE---PSVFLFKPSDEQLKTGTVS 151
Query: 204 LGCLASSYFPEPVTVTWNSGALTSGVHTFPSVL----QPSGLYSLSSMVTVPASSLSS-K 368
+ CL + ++P+ + V W +T F + YSLSS++T+P+S S
Sbjct: 152 VVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHD 211
Query: 369 SYTCNVNHPATTTKVDK 419
+YTC V+H + TT + K
Sbjct: 212 AYTCEVSHKSLTTTLVK 228
Score = 61.6 bits (148), Expect = 1e-09
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +3
Query: 801 EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQD-VD 977
EP V+ P E+L V++ CLV FYP DI+V+WK +G + + ++ + QD
Sbjct: 132 EPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 978 GTFFLYSKLAVDKARWDHGDKFECAVMHEALHNHYTQKSISKTQ 1109
T+ L S L + + + D + C V H++L KS SK +
Sbjct: 192 STYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV-KSFSKNE 234
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 70.1 bits (170), Expect = 4e-12
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Frame = +3
Query: 39 MNSLRTEDTARYYCAGRD-----LGWGPGVEVVVSSAPKTAPSVYPLAPCGRDVSGPNVA 203
++SL+ +D A YYC R+ G G VE+ S A PSV+ P + V+
Sbjct: 95 ISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAE---PSVFLFKPSDEQLKTGTVS 151
Query: 204 LGCLASSYFPEPVTVTWNSGALTSGVHTFPSVL----QPSGLYSLSSMVTVPASSLSS-K 368
+ CL + ++P+ + V W +T F + YSLSS++T+P+S S
Sbjct: 152 VVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHD 211
Query: 369 SYTCNVNHPATTTKVDK 419
+YTC V+H + TT + K
Sbjct: 212 AYTCEVSHKSLTTTLVK 228
Score = 61.6 bits (148), Expect = 1e-09
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +3
Query: 801 EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQD-VD 977
EP V+ P E+L V++ CLV FYP DI+V+WK +G + + ++ + QD
Sbjct: 132 EPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 978 GTFFLYSKLAVDKARWDHGDKFECAVMHEALHNHYTQKSISKTQ 1109
T+ L S L + + + D + C V H++L KS SK +
Sbjct: 192 STYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV-KSFSKNE 234
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 60.8 bits (146), Expect = 2e-09
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = +3
Query: 99 WGPGVEVVVSSAPKTAPSVYPLAPCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALT 272
+G G +V + PK PSV P ++S L CL S ++P VTV W + +T
Sbjct: 145 FGSGTKVTIPDQPKFPPSVTLFPPSTEELSTYTATLVCLISDFYPGNVTVAWKADGSPVT 204
Query: 273 SGVHTFPSVLQPSGLYSLSSMVTVPASSLSSK-SYTCNVNHPATTTKVDKRVGIHQPQTC 449
GV T + Q S Y SS +T+ S K SY+C V H +T V K V +P C
Sbjct: 205 RGVVTSQASQQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGST--VTKTV---KPSAC 259
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/87 (33%), Positives = 39/87 (44%)
Frame = +3
Query: 804 PQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGT 983
P V PP EELS TL CL+ FYP ++ V WK++G P T+ Q
Sbjct: 161 PSVTLFPPSTEELSTYTATLVCLISDFYPGNVTVAWKADGSPVTRGVV-TSQASQQSSSK 219
Query: 984 FFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ S L + + W + C V HE
Sbjct: 220 YVASSYLTLTGSEWKPKSSYSCEVTHE 246
>ref|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus].
Length = 386
Score = 54.3 bits (129), Expect = 2e-07
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 7/216 (3%)
Frame = +3
Query: 471 VAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEE 650
V+GP+V P QT TC S + + W+ +G E+ ++T E
Sbjct: 151 VSGPAVRATP---------EQTVSFTCTSHGFSPRN--ISLKWFKNGNELSASQTSVDPE 199
Query: 651 QFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNVDL----PAPITRTISKAIGQSREPQVYT 818
+ TY + S + + C+V +V L P T ++SK I +V
Sbjct: 200 EDGVTYSITSTTELLLAPGDVHSQVSCEVAHVTLQGSRPLRGTASLSKTIRVPPTLEVTQ 259
Query: 819 LPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYS 998
P +++ +TCLV FYP + + W NG T + ++ DGTF S
Sbjct: 260 QPMAGNQVN----IITCLVNKFYPQQLQLTWLENG--NMSRTEAASTLIENKDGTFNYMS 313
Query: 999 KLAVDKARWDHGDKFECAVMHE---ALHNHYTQKSI 1097
L V + F C V H+ A+ + T+ S+
Sbjct: 314 WLLVISSAHRKAVVFTCQVEHDGQPAVTKNSTETSV 349
>ref|NP_001180225.1| MHC class I heavy chain [Bos taurus].
Length = 359
Score = 49.7 bits (117), Expect = 5e-06
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +3
Query: 822 PPPAE----ELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFF 989
PP A +S +VTL C +GFYP DI + W+ NG+ + ++ + DG F
Sbjct: 204 PPKAHVTHHSISGHEVTLRCWALGFYPEDISLTWQRNGEDQTQD-MELVETRPSGDGNFQ 262
Query: 990 LYSKLAVDKARWDHGDKFECAVMHEALHNHYTQK 1091
++ L V K+ C V HE L T K
Sbjct: 263 KWAALVVPSG---EEQKYTCRVQHEGLQEPLTLK 293
>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
[Bos taurus].
Length = 360
Score = 49.7 bits (117), Expect = 5e-06
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 822 PPPAE----ELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFF 989
PP A +S +VTL C +GFYP +I + W+ NG+ + ++ + DGTF
Sbjct: 205 PPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQD-MELVETRPSGDGTFQ 263
Query: 990 LYSKLAVDKARWDHGDKFECAVMHEALHNHYTQK 1091
++ L V K+ C V HE L T K
Sbjct: 264 KWAALVVPSG---EEQKYTCRVQHEGLQEPLTLK 294
>ref|NP_001099086.1| non-classical MHC class I antigen [Bos taurus].
Length = 342
Score = 49.3 bits (116), Expect = 7e-06
Identities = 26/82 (31%), Positives = 41/82 (50%)
Frame = +3
Query: 840 LSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKA 1019
+S +VTL C +GFYP +I + W+ NG+ + ++ + DGTF ++ LAV
Sbjct: 215 ISEREVTLRCWALGFYPEEISLTWQRNGEDQTQD-MELVETRPSGDGTFQKWAALAVPSG 273
Query: 1020 RWDHGDKFECAVMHEALHNHYT 1085
++ C V HE L T
Sbjct: 274 ---EEQRYTCRVQHEGLQEPLT 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,570,303
Number of extensions: 1625179
Number of successful extensions: 7315
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7229
Number of HSP's successfully gapped: 16
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA THY01_0039_B08
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0039_B08
(1257 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 148 1e-35
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 142 7e-34
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 142 7e-34
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 58 2e-08
Alignment gi|NP_001171117.1| tyrosine-protein phosphatase non-receptor ty... 55 2e-07
Alignment gi|NP_031573.2| tyrosine-protein phosphatase non-receptor type ... 55 2e-07
Alignment gi|NP_034517.2| class II histocompatibility antigen, M beta 1 c... 52 1e-06
Alignment gi|XP_003086107.1| PREDICTED: class II histocompatibility antig... 52 1e-06
Alignment gi|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus ... 52 1e-06
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 148 bits (373), Expect = 1e-35
Identities = 107/333 (32%), Positives = 166/333 (49%), Gaps = 10/333 (3%)
Frame = +3
Query: 147 PSVYPLAPCGRDVSGPNVALGCLASSYFPE-PVTVTWNSGALTSGVHTFPSVLQPSGLYS 323
P++YPL R +S V +GCL YFP + VTW FP L G Y+
Sbjct: 11 PTIYPLT-LPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69
Query: 324 LSSMVTVPASSL-SSKSYTCNVNHPATTTK-VDKRVGIHQPQTCPICPGCEVAGPSVFIF 497
+SS +T+PA +S C+V H + + ++ + P T P P C+ PS+ +
Sbjct: 70 MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQ---PSLSLQ 126
Query: 498 PPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNST---Y 668
P +D L++ +TC + + V F+W E T + +++ ++ Y
Sbjct: 127 RPALED-LLLGSDASITCTLNGLRNPEGAV-FTW-----EPSTGKDAVQKKAVQNSCGCY 179
Query: 669 RVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSR 848
V SVLP + W G FKC V + + +T TI+K + PQV+ LPPP+EEL+
Sbjct: 180 SVSSVLPGCAERWNSGASFKCTVTHPESDT-LTGTIAKITVNTFPPQVHLLPPPSEELAL 238
Query: 849 SK-VTLTCLVIGFYPPDIHVEW-KSNGQPEPENTYRTTPPQQDVDG--TFFLYSKLAVDK 1016
++ V+LTCLV F P ++ V W N + PE+ P ++ +G T+ + S L V
Sbjct: 239 NELVSLTCLVRAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSA 298
Query: 1017 ARWDHGDKFECAVMHEALHNHYTQKSISKTQGK 1115
W GD++ C V HEAL ++TQK+I + GK
Sbjct: 299 EIWKQGDQYSCMVGHEALPMNFTQKTIDRLSGK 331
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 142 bits (357), Expect = 7e-34
Identities = 105/333 (31%), Positives = 162/333 (48%), Gaps = 10/333 (3%)
Frame = +3
Query: 147 PSVYPLAPCGRDVSGPNVALGCLASSYFPE-PVTVTWNSGALTSGVHTFPSVLQPSGLYS 323
P++YPL S P V +GCL YFP + VTW FP L G Y+
Sbjct: 16 PTIYPLTLPPALSSDP-VIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74
Query: 324 LSSMVTVPASSL-SSKSYTCNVNHPATTTK-VDKRVGIHQPQTCPICPGCEVAGPSVFIF 497
+SS +T+PA +S C+V H + + +D P P C+ PS+ +
Sbjct: 75 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQ---PSLSLQ 131
Query: 498 PPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNST---Y 668
P +D L++ +TC + + V F+W E T + +++ ++ Y
Sbjct: 132 RPALED-LLLGSDASITCTLNGLRNPEGAV-FTW-----EPSTGKDAVQKKAVQNSCGCY 184
Query: 669 RVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSR 848
V SVLP + W G FKC V + + +T TI+K + PQV+ LPPP+EEL+
Sbjct: 185 SVSSVLPGCAERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELAL 243
Query: 849 SKV-TLTCLVIGFYPPDIHVEW-KSNGQPEPENTYRTTPPQQDVDG--TFFLYSKLAVDK 1016
+++ +LTCLV F P ++ V W N + PE+ P ++ +G T+ + S L V
Sbjct: 244 NELLSLTCLVRAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSA 303
Query: 1017 ARWDHGDKFECAVMHEALHNHYTQKSISKTQGK 1115
W GD++ C V HEAL ++TQK+I + GK
Sbjct: 304 ETWKQGDQYSCMVGHEALPMNFTQKTIDRLSGK 336
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 142 bits (357), Expect = 7e-34
Identities = 105/333 (31%), Positives = 162/333 (48%), Gaps = 10/333 (3%)
Frame = +3
Query: 147 PSVYPLAPCGRDVSGPNVALGCLASSYFPE-PVTVTWNSGALTSGVHTFPSVLQPSGLYS 323
P++YPL S P V +GCL YFP + VTW FP L G Y+
Sbjct: 75 PTIYPLTLPPALSSDP-VIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133
Query: 324 LSSMVTVPASSL-SSKSYTCNVNHPATTTK-VDKRVGIHQPQTCPICPGCEVAGPSVFIF 497
+SS +T+PA +S C+V H + + +D P P C+ PS+ +
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQ---PSLSLQ 190
Query: 498 PPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNST---Y 668
P +D L++ +TC + + V F+W E T + +++ ++ Y
Sbjct: 191 RPALED-LLLGSDASITCTLNGLRNPEGAV-FTW-----EPSTGKDAVQKKAVQNSCGCY 243
Query: 669 RVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSR 848
V SVLP + W G FKC V + + +T TI+K + PQV+ LPPP+EEL+
Sbjct: 244 SVSSVLPGCAERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELAL 302
Query: 849 SKV-TLTCLVIGFYPPDIHVEW-KSNGQPEPENTYRTTPPQQDVDG--TFFLYSKLAVDK 1016
+++ +LTCLV F P ++ V W N + PE+ P ++ +G T+ + S L V
Sbjct: 303 NELLSLTCLVRAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSA 362
Query: 1017 ARWDHGDKFECAVMHEALHNHYTQKSISKTQGK 1115
W GD++ C V HEAL ++TQK+I + GK
Sbjct: 363 ETWKQGDQYSCMVGHEALPMNFTQKTIDRLSGK 395
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 57.8 bits (138), Expect = 2e-08
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + +P V P + L +K TL CLV FYP + V+WK +G P + TT P
Sbjct: 103 LGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGTLVVDWKVDGVPVTQGV-ETTQP 161
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHEALHNHYTQKSISKTQ 1109
+ + + + S L + +W ++ C V HE + +KS+S +
Sbjct: 162 SKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHE---GNTVEKSVSPAE 207
Score = 48.9 bits (115), Expect = 8e-06
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +3
Query: 99 WGPGVEVVVSSAPKTAPSVYPLAPCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALT 272
+G G ++ + PK+ P V P +++ L CL S ++P + V W + +T
Sbjct: 94 FGGGTQLTILGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGTLVVDWKVDGVPVT 153
Query: 273 SGVHTFPSVLQPSGLYSLSSMVTVPASS-LSSKSYTCNVNHPATTTK 410
GV T Q + Y +SS +T+ + + Y+C V H T +
Sbjct: 154 QGVETTQPSKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHEGNTVE 200
>ref|NP_001171117.1| tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1
[Mus musculus].
Length = 509
Score = 54.7 bits (130), Expect = 2e-07
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 3/192 (1%)
Frame = +3
Query: 498 PPK---PKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTY 668
PP+ P D + Q TC S + + W+ DG E+H ET N +Y
Sbjct: 151 PPEVSGPADRGIPDQKVNFTCKSHGFSPRN--ITLKWFKDGQELHPLETTVNPSGKNVSY 208
Query: 669 RVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSR 848
+ S + + + C+V ++ L R I+ R + + S
Sbjct: 209 NISSTVRVVLNSMDVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPT-SM 267
Query: 849 SKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKARWD 1028
++V LTC FYP D+ + W NG +T + ++ DGT+ S V+ +
Sbjct: 268 NQVNLTCRAERFYPEDLQLIWLENGNVSRNDTPKNL--TKNTDGTYNYTSLFLVNSSAHR 325
Query: 1029 HGDKFECAVMHE 1064
F C V H+
Sbjct: 326 EDVVFTCQVKHD 337
>ref|NP_031573.2| tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1
[Mus musculus].
Length = 509
Score = 54.7 bits (130), Expect = 2e-07
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 3/192 (1%)
Frame = +3
Query: 498 PPK---PKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTY 668
PP+ P D + Q TC S + + W+ DG E+H ET N +Y
Sbjct: 151 PPEVSGPADRGIPDQKVNFTCKSHGFSPRN--ITLKWFKDGQELHPLETTVNPSGKNVSY 208
Query: 669 RVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSR 848
+ S + + + C+V ++ L R I+ R + + S
Sbjct: 209 NISSTVRVVLNSMDVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPT-SM 267
Query: 849 SKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKARWD 1028
++V LTC FYP D+ + W NG +T + ++ DGT+ S V+ +
Sbjct: 268 NQVNLTCRAERFYPEDLQLIWLENGNVSRNDTPKNL--TKNTDGTYNYTSLFLVNSSAHR 325
Query: 1029 HGDKFECAVMHE 1064
F C V H+
Sbjct: 326 EDVVFTCQVKHD 337
>ref|NP_034517.2| class II histocompatibility antigen, M beta 1 chain precursor [Mus
musculus].
Length = 261
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +3
Query: 843 SRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKAR 1022
+R V L C V GFYP D+ + W NGQ P ++ + Q + D T+ S LA+ +
Sbjct: 127 TREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSYLALTPS- 185
Query: 1023 WDHGDKFECAVMH 1061
+GD + C V H
Sbjct: 186 --YGDVYTCVVQH 196
>ref|XP_003086107.1| PREDICTED: class II histocompatibility antigen, M beta 1 chain-like
[Mus musculus].
Length = 261
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +3
Query: 843 SRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKAR 1022
+R V L C V GFYP D+ + W NGQ P ++ + Q + D T+ S LA+ +
Sbjct: 127 TREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSYLALTPS- 185
Query: 1023 WDHGDKFECAVMH 1061
+GD + C V H
Sbjct: 186 --YGDVYTCVVQH 196
>ref|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus musculus].
Length = 261
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +3
Query: 843 SRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKAR 1022
+R V L C V GFYP D+ + W NGQ P ++ + Q + D T+ S LA+ +
Sbjct: 127 TREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSYLALTPS- 185
Query: 1023 WDHGDKFECAVMH 1061
+GD + C V H
Sbjct: 186 --YGDVYTCVVQH 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,843,118
Number of extensions: 1336140
Number of successful extensions: 6183
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6030
Number of HSP's successfully gapped: 10
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0039_B08
(1257 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858078.1| PREDICTED: similar to immunoglobulin iota chain... 88 2e-17
Alignment gi|XP_859163.1| PREDICTED: similar to immunoglobulin iota chain... 87 4e-17
Alignment gi|XP_859352.1| PREDICTED: similar to immunoglobulin iota chain... 86 6e-17
Alignment gi|XP_859282.1| PREDICTED: similar to immunoglobulin iota chain... 84 2e-16
Alignment gi|XP_858398.1| PREDICTED: similar to Immunoglobulin omega chai... 84 2e-16
Alignment gi|XP_858035.1| PREDICTED: similar to immunoglobulin iota chain... 84 3e-16
Alignment gi|XP_859464.1| PREDICTED: similar to immunoglobulin iota chain... 83 5e-16
Alignment gi|XP_859427.1| PREDICTED: similar to immunoglobulin iota chain... 83 6e-16
Alignment gi|XP_858789.1| PREDICTED: similar to immunoglobulin iota chain... 83 6e-16
Alignment gi|XP_858161.1| PREDICTED: similar to immunoglobulin iota chain... 83 6e-16
>ref|XP_858078.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 18 [Canis familiaris].
Length = 242
Score = 87.8 bits (216), Expect = 2e-17
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGR-----DLGWGPGVEVVVSSAPKTAPSVYPLA 167
S+D ++NT Y+ ++ L+ ED A Y+CA R DL +G G+E+ V PK +PSV
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCASREGVGADLVFGEGIELTVLGQPKASPSVTLFL 149
Query: 168 PCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVT 341
P ++ L CL S ++P VTV W + +T GV T Q + Y+ SS ++
Sbjct: 150 PLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYLS 209
Query: 342 V-PASSLSSKSYTCNVNHPATTTKVDKRV 425
+ P S S++C V H +T V+K+V
Sbjct: 210 LTPDKWKSHSSFSCLVTHEGST--VEKKV 236
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 136 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 194
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 195 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 228
>ref|XP_859163.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 45 [Canis familiaris].
Length = 243
Score = 86.7 bits (213), Expect = 4e-17
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLGWGP------GVEVVVSSAPKTAPSVYPL 164
S+D ++NT Y+ ++ L+ ED A Y+CAG W P G+E+ V PK +PSV
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCAGWGQTWSPWFVFSEGIELTVLGQPKASPSVTLF 149
Query: 165 APCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMV 338
P ++ L CL S ++P VTV W + +T GV T Q + Y+ SS +
Sbjct: 150 LPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYL 209
Query: 339 TV-PASSLSSKSYTCNVNHPATTTKVDKRV 425
++ P S S++C V H +T V+K+V
Sbjct: 210 SLTPDKWKSHSSFSCLVTHEGST--VEKKV 237
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 137 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 195
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 196 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 229
>ref|XP_859352.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 50 [Canis familiaris].
Length = 243
Score = 86.3 bits (212), Expect = 6e-17
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLGWGP------GVEVVVSSAPKTAPSVYPL 164
S+D ++NT Y+ ++ L+ ED A Y+CA D G P G+E+ V PK +PSV
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCASADCGGSPWFVFSEGIELTVLGQPKASPSVTLF 149
Query: 165 APCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMV 338
P ++ L CL S ++P VTV W + +T GV T Q + Y+ SS +
Sbjct: 150 LPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYL 209
Query: 339 TV-PASSLSSKSYTCNVNHPATTTKVDKRV 425
++ P S S++C V H +T V+K+V
Sbjct: 210 SLTPDKWKSHSSFSCLVTHEGST--VEKKV 237
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 137 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 195
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 196 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 229
>ref|XP_859282.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 48 [Canis familiaris].
Length = 240
Score = 84.3 bits (207), Expect = 2e-16
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLG-W--GPGVEVVVSSAPKTAPSVYPLAPC 173
S+D ++NT Y+ ++ L+ ED A Y+CAG G W G G+E+ V PK +PSV P
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCAGWWKGRWVGGGGIELTVLGQPKASPSVTLFLPL 149
Query: 174 GRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVTV- 344
++ L CL S ++P VTV W + +T GV T Q + Y+ SS +++
Sbjct: 150 SGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYLSLT 209
Query: 345 PASSLSSKSYTCNVNHPATTTKVDKRV 425
P S S++C V H +T V+K+V
Sbjct: 210 PDKWKSHSSFSCLVTHEGST--VEKKV 234
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 134 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 192
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 193 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 226
>ref|XP_858398.1| PREDICTED: similar to Immunoglobulin omega chain precursor (VpreB2
protein) isoform 26 [Canis familiaris].
Length = 242
Score = 84.3 bits (207), Expect = 2e-16
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDL---GW--GPGVEVVVSSAPKTAPSVYPLA 167
S+D ++NT Y+ ++ L+ ED A Y+CA RD W G G+E+ V PK +PSV
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCATRDRIPRRWVGGGGIELTVLGQPKASPSVTLFL 149
Query: 168 PCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVT 341
P ++ L CL S ++P VTV W + +T GV T Q + Y+ SS ++
Sbjct: 150 PLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYLS 209
Query: 342 V-PASSLSSKSYTCNVNHPATTTKVDKRV 425
+ P S S++C V H +T V+K+V
Sbjct: 210 LTPDKWKSHSSFSCLVTHEGST--VEKKV 236
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 136 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 194
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 195 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 228
>ref|XP_858035.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 17 [Canis familiaris].
Length = 250
Score = 84.0 bits (206), Expect = 3e-16
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 16/157 (10%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCA-----------GRDLGW--GPGVEVVVSSAPKT 143
S+D ++NT Y+ ++ L+ ED A Y+CA G +GW G G+E+ V PK
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCAAHHVPACETVSGATVGWIDGEGIELTVLGQPKA 149
Query: 144 APSVYPLAPCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGL 317
+PSV P ++ L CL S ++P VTV W + +T GV T Q +
Sbjct: 150 SPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNK 209
Query: 318 YSLSSMVTV-PASSLSSKSYTCNVNHPATTTKVDKRV 425
Y+ SS +++ P S S++C V H +T V+K+V
Sbjct: 210 YAASSYLSLTPDKWKSHSSFSCLVTHEGST--VEKKV 244
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 144 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 202
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 203 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 236
>ref|XP_859464.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 53 [Canis familiaris].
Length = 240
Score = 83.2 bits (204), Expect = 5e-16
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLGW---GPGVEVVVSSAPKTAPSVYPLAPC 173
S+D ++NT Y+ ++ L+ ED A Y+C D W G+E+ V PK +PSV P
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCFSYDSPWFVFSEGIELTVLGQPKASPSVTLFLPL 149
Query: 174 GRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVTV- 344
++ L CL S ++P VTV W + +T GV T Q + Y+ SS +++
Sbjct: 150 SGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYLSLT 209
Query: 345 PASSLSSKSYTCNVNHPATTTKVDKRV 425
P S S++C V H +T V+K+V
Sbjct: 210 PDKWKSHSSFSCLVTHEGST--VEKKV 234
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 134 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 192
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 193 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 226
>ref|XP_859427.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 52 [Canis familiaris].
Length = 241
Score = 82.8 bits (203), Expect = 6e-16
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRD----LGWGPGVEVVVSSAPKTAPSVYPLAP 170
S+D ++NT Y+ ++ L+ ED A Y+CA R+ + G+E+ V PK +PSV P
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCASREGSPWFVFSEGIELTVLGQPKASPSVTLFLP 149
Query: 171 CGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVTV 344
++ L CL S ++P VTV W + +T GV T Q + Y+ SS +++
Sbjct: 150 LSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYLSL 209
Query: 345 -PASSLSSKSYTCNVNHPATTTKVDKRV 425
P S S++C V H +T V+K+V
Sbjct: 210 TPDKWKSHSSFSCLVTHEGST--VEKKV 235
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 135 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 193
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 194 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 227
>ref|XP_858789.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 35 [Canis familiaris].
Length = 240
Score = 82.8 bits (203), Expect = 6e-16
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLGW---GPGVEVVVSSAPKTAPSVYPLAPC 173
S+D ++NT Y+ ++ L+ ED A Y+CA W G+E+ V PK +PSV P
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCASYGSPWFVFSEGIELTVLGQPKASPSVTLFLPL 149
Query: 174 GRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVTV- 344
++ L CL S ++P VTV W + +T GV T Q + Y+ SS +++
Sbjct: 150 SGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYLSLT 209
Query: 345 PASSLSSKSYTCNVNHPATTTKVDKRV 425
P S S++C V H +T V+K+V
Sbjct: 210 PDKWKSHSSFSCLVTHEGST--VEKKV 234
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 134 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 192
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 193 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 226
>ref|XP_858161.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 20 [Canis familiaris].
Length = 242
Score = 82.8 bits (203), Expect = 6e-16
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAG-----RDLGWGPGVEVVVSSAPKTAPSVYPLA 167
S+D ++NT Y+ ++ L+ ED A Y+CA +G G+E+ V PK +PSV
Sbjct: 90 SKDVAKNTGYLSISELQPEDEATYFCAAWPSSLSKFSYGEGIELTVLGQPKASPSVTLFL 149
Query: 168 PCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALTSGVHTFPSVLQPSGLYSLSSMVT 341
P ++ L CL S ++P VTV W + +T GV T Q + Y+ SS ++
Sbjct: 150 PLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGVETTKPSRQSNNKYAASSYLS 209
Query: 342 V-PASSLSSKSYTCNVNHPATTTKVDKRV 425
+ P S S++C V H +T V+K+V
Sbjct: 210 LTPDKWKSHSSFSCLVTHEGST--VEKKV 236
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V P + EL K TL CL+ FYP + V WK++G P + TT P
Sbjct: 136 LGQPKASPSVTLFLPLSGELGADKATLVCLISDFYPSGVTVAWKADGSPVTQGV-ETTKP 194
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S L++ +W F C V HE
Sbjct: 195 SRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 228
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,608,030
Number of extensions: 1654665
Number of successful extensions: 7583
Number of sequences better than 1.0e-05: 107
Number of HSP's gapped: 7350
Number of HSP's successfully gapped: 192
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0039_B08
(1257 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor... 64 3e-10
Alignment gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho... 64 4e-10
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 50 6e-06
>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
sapiens].
Length = 213
Score = 63.9 bits (154), Expect = 3e-10
Identities = 32/87 (36%), Positives = 46/87 (52%)
Frame = +3
Query: 804 PQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGT 983
P V PP +EEL +K TL CL+ FYP + V WK++G P + TTP +Q +
Sbjct: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQS-NNK 172
Query: 984 FFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ S L++ +W + C VMHE
Sbjct: 173 YAASSYLSLTPEQWRSRRSYSCQVMHE 199
Score = 59.3 bits (142), Expect = 7e-09
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Frame = +3
Query: 99 WGPGVEVVVSSAPKTAPSVYPLAPCGRDVSGPNVALGCLASSYFPEPVTVTWNSGA--LT 272
+G G ++ V S PK PSV P ++ L CL + ++P +TVTW + +T
Sbjct: 98 FGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPIT 157
Query: 273 SGVHTFPSVLQPSGLYSLSSMVTV-PASSLSSKSYTCNVNHPATTTK 410
GV Q + Y+ SS +++ P S +SY+C V H +T +
Sbjct: 158 QGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVE 204
>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
Length = 214
Score = 63.5 bits (153), Expect = 4e-10
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +3
Query: 765 TRTISKAIGQSR-EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPEN 941
T T +GQ + P V PP +EEL +K TL CL+ FYP + V WK++G P
Sbjct: 101 TGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAG 160
Query: 942 TYRTTPPQQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHEALHNHYTQKSISKTQ 1109
TT P + + + S L++ +W + C V HE +K+++ T+
Sbjct: 161 V-ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE---GSTVEKTVAPTE 212
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +3
Query: 99 WGPGVEVVVSSAPKTAPSVYPLAPCGRDVSGPNVALGCLASSYFPEPVTVTW--NSGALT 272
+G G +V V PK P+V P ++ L CL S ++P VTV W + +
Sbjct: 99 FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK 158
Query: 273 SGVHTFPSVLQPSGLYSLSSMVTV-PASSLSSKSYTCNVNHPATTTK 410
+GV T Q + Y+ SS +++ P S +SY+C V H +T +
Sbjct: 159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 205
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 49.7 bits (117), Expect = 6e-06
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLGWGPG 110
SRDNS+N+ Y+QMNSLR EDTA YYCA +D PG
Sbjct: 90 SRDNSKNSLYLQMNSLRAEDTALYYCA-KDTHENPG 124
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,410,073
Number of extensions: 1617167
Number of successful extensions: 7167
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7107
Number of HSP's successfully gapped: 5
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0039_B08
(1257 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 723 0.0
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 79 5e-15
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 78 9e-15
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 66 4e-11
Alignment gi|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-2... 52 5e-07
Alignment gi|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-... 52 7e-07
Alignment gi|NP_001107179.1| MHC class II, DM beta [Sus scrofa]. 49 4e-06
Alignment gi|NP_001011508.1| tyrosine-protein phosphatase non-receptor ty... 49 6e-06
Alignment gi|NP_001107166.1| SLA class II histocompatibility antigen, DQ ... 48 1e-05
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 723 bits (1865), Expect = 0.0
Identities = 354/387 (91%), Positives = 358/387 (92%), Gaps = 16/387 (4%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCA----------------GRDLGWGPGVEVVVSSA 134
SRDNSQNTAY+QMNSLRTEDTA YYCA G DL WGPGVEVVVSSA
Sbjct: 89 SRDNSQNTAYLQMNSLRTEDTALYYCAREVCFRYNTGCWDGYYGMDL-WGPGVEVVVSSA 147
Query: 135 PKTAPSVYPLAPCGRDVSGPNVALGCLASSYFPEPVTVTWNSGALTSGVHTFPSVLQPSG 314
PKTAPSVYPLAPCGRD SGPNVALGCLASSYFPEPVT+TWNSGALTSGVHTFPSVLQPSG
Sbjct: 148 PKTAPSVYPLAPCGRDTSGPNVALGCLASSYFPEPVTMTWNSGALTSGVHTFPSVLQPSG 207
Query: 315 LYSLSSMVTVPASSLSSKSYTCNVNHPATTTKVDKRVGIHQPQTCPICPGCEVAGPSVFI 494
LYSLSSMVTVPASSLSSKSYTCNVNHPATTTKVDKRVG CPICPGCEVAGPSVFI
Sbjct: 208 LYSLSSMVTVPASSLSSKSYTCNVNHPATTTKVDKRVGTKTKPPCPICPGCEVAGPSVFI 267
Query: 495 FPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTYRV 674
FPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTYRV
Sbjct: 268 FPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTYRV 327
Query: 675 VSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSRSK 854
VSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSRSK
Sbjct: 328 VSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSRSK 387
Query: 855 VTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKARWDHG 1034
VT+TCLVIGFYPPDIHVEWKSNGQPEPE YRTTPPQQDVDGTFFLYSKLAVDKARWDHG
Sbjct: 388 VTVTCLVIGFYPPDIHVEWKSNGQPEPEGNYRTTPPQQDVDGTFFLYSKLAVDKARWDHG 447
Query: 1035 DKFECAVMHEALHNHYTQKSISKTQGK 1115
+ FECAVMHEALHNHYTQKSISKTQGK
Sbjct: 448 ETFECAVMHEALHNHYTQKSISKTQGK 474
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 79.0 bits (193), Expect = 5e-15
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = +3
Query: 15 SQNTAYVQMNSLRTEDTARYYCAGRDLG----WGPGVEVVVSSAPKTAPSVYPLAPCGRD 182
S N A + + + ED A Y+CA R G +G G V V PK AP+V P +
Sbjct: 87 SGNKATLTITGAQAEDEADYFCALRKSGGTVTFGGGTHVTVLGQPKAAPTVNLFPPSSEE 146
Query: 183 VSGPNVALGCLASSYFPEPVTVTWNSG--ALTSGVHTFPSVLQPSGLYSLSSMVTVPASS 356
+ L CL S ++P VTVTW +G +T GV T Q + Y+ SS + + AS
Sbjct: 147 LGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPSKQSNNKYAASSYLALSASD 206
Query: 357 -LSSKSYTCNVNHPAT 401
SS +TC V H T
Sbjct: 207 WKSSSGFTCQVTHEGT 222
Score = 62.0 bits (149), Expect = 7e-10
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSRE-PQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V PP +EEL +K TL CL+ FYP + V WK+ G + TT P
Sbjct: 128 LGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGV-ETTKP 186
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S LA+ + W F C V HE
Sbjct: 187 SKQSNNKYAASSYLALSASDWKSSSGFTCQVTHE 220
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 78.2 bits (191), Expect = 9e-15
Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Frame = +3
Query: 3 SRDNSQNTAYVQMNSLRTEDTARYYCAGRDLG-----WGPGVEVVVSSAPKTAPSVYPLA 167
S S NTA + ++ + ED A YYC D +G G + V PK AP+V
Sbjct: 81 SGSKSGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGRGTRLSVLRQPKAAPTVNLFP 140
Query: 168 PCGRDVSGPNVALGCLASSYFPEPVTVTWNSG--ALTSGVHTFPSVLQPSGLYSLSSMVT 341
P ++ L CL S ++P VTVTW +G +T GV T Q + Y+ SS +
Sbjct: 141 PSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPSKQSNNKYAASSYLA 200
Query: 342 VPASS-LSSKSYTCNVNHPAT 401
+ AS SS +TC V H T
Sbjct: 201 LSASDWKSSSGFTCQVTHEGT 221
Score = 61.6 bits (148), Expect = 9e-10
Identities = 31/87 (35%), Positives = 42/87 (48%)
Frame = +3
Query: 804 PQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGT 983
P V PP +EEL +K TL CL+ FYP + V WK+ G + TT P + +
Sbjct: 134 PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGV-ETTKPSKQSNNK 192
Query: 984 FFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ S LA+ + W F C V HE
Sbjct: 193 YAASSYLALSASDWKSSSGFTCQVTHE 219
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 66.2 bits (160), Expect = 4e-11
Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Frame = +3
Query: 99 WGPGVEVVVSSAPKTAPSVYPLAPCGRDVSGPNVALGCLASSYFPEPVTVTWNSG--ALT 272
+G G + V PK AP+V P ++S L CL S ++P VTVTW +G +T
Sbjct: 96 FGGGTRLTVLGQPKAAPTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTTIT 155
Query: 273 SGVHTFPSVLQPSGLYSLSSMVTVPASS-LSSKSYTCNVNHPATTTKVDKRVGIHQPQTC 449
GV T Q + Y+ SS + + AS SS +TC V H T V+K V P C
Sbjct: 156 QGVDTSQPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNT--VEKTV---MPSEC 210
Score = 58.9 bits (141), Expect = 6e-09
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 786 IGQSRE-PQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPP 962
+GQ + P V PP EELS +K TL CL+ FYP + V WK+ G + T+ P
Sbjct: 105 LGQPKAAPTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTTITQGV-DTSQP 163
Query: 963 QQDVDGTFFLYSKLAVDKARWDHGDKFECAVMHE 1064
+ + + S LA+ + W F C V H+
Sbjct: 164 SKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQ 197
>ref|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-22-like [Sus scrofa].
Length = 308
Score = 52.4 bits (124), Expect = 5e-07
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Frame = +3
Query: 771 TISKAIGQSREPQVYTLPPPAEELSRS-KVTLTCLVIGFYPPDIHVEWKSNGQPEPENT- 944
T+ + + Q R P+V P E+SR+ K TL CL GFYP + + W NG+
Sbjct: 129 TVLEDLQQVRPPKVAVFEPSEAEISRTQKATLVCLATGFYPDHVELSWWVNGKQVQSGVS 188
Query: 945 -----YRTTPPQQDVDGTFFLYSKLAVDKARWDH-GDKFECAVMHEAL 1070
YR P + D ++ L S+L V A W + + F C V L
Sbjct: 189 TDLQPYREDPSRN--DSSYCLSSRLRVTAAFWHNPRNHFRCQVQFYGL 234
>ref|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-receptor type substrate
1-like [Sus scrofa].
Length = 323
Score = 52.0 bits (123), Expect = 7e-07
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Frame = +3
Query: 507 PKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTYRVVSVL 686
P + +I Q +C+ E+ + W+ +G E+ + +T + + ++ Y++ S
Sbjct: 123 PLEKALIGQAVNFSCISYGFFPEN--ITLKWFKNGKEISSLQTHVVKLKESNVYKISSTT 180
Query: 687 PI--QHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSRSKVT 860
+ QD+ C VN++ L P+ T + P + P +S++K+
Sbjct: 181 EVVLSLQDFYA--YITCDVNHLSLHYPLQGTADLSKTMLVPPTMSIFEHP---VSKNKIN 235
Query: 861 LTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDK 1016
+TC FYP I + W NG +T P + DG + + S + V+K
Sbjct: 236 VTCKAKKFYPKGIWLTWLKNG--NVSRIDKTLTPTKRRDGLYTVQSSILVNK 285
Score = 50.1 bits (118), Expect = 3e-06
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Frame = +3
Query: 33 VQMNSLRTEDTARYYCAGRDLGW-------GPGVEVVVSSAPKTAPSVYPLAPCGRDVSG 191
++++ + D Y+C G G G +V V AP + P + + P + + G
Sbjct: 74 IRISEISLADAGTYFCVKFKEGKPDIEYQSGQGTQVTVI-APPSLPVI--IGPLEKALIG 130
Query: 192 PNVALGCLASSYFPEPVTVTW-NSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSLSSK 368
V C++ +FPE +T+ W +G S + T L+ S +Y +SS V S
Sbjct: 131 QAVNFSCISYGFFPENITLKWFKNGKEISSLQTHVVKLKESNVYKISSTTEVVLSLQDFY 190
Query: 369 SY-TCNVNH 392
+Y TC+VNH
Sbjct: 191 AYITCDVNH 199
>ref|NP_001107179.1| MHC class II, DM beta [Sus scrofa].
Length = 272
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/108 (28%), Positives = 47/108 (43%)
Frame = +3
Query: 738 NNVDLPAPITRTISKAIGQSREPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKS 917
N + A T+ K++ +P + +R V L C V GFYP D+ + W+
Sbjct: 101 NGLQNCATHTQPFWKSLTHRTQPPSVQVAKTTPFNTRESVMLACYVWGFYPADVIITWRK 160
Query: 918 NGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKARWDHGDKFECAVMH 1061
NGQP + Q + D T+ S LA + +GD + C V H
Sbjct: 161 NGQPVLPHGKAHMITQPNGDWTYQTVSHLATTPS---YGDTYTCVVEH 205
>ref|NP_001011508.1| tyrosine-protein phosphatase non-receptor type substrate 1 [Sus
scrofa].
Length = 507
Score = 48.9 bits (115), Expect = 6e-06
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 9/203 (4%)
Frame = +3
Query: 531 QTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTYRVVSVLPIQHQDWL 710
QT TC S + + W+ +G E+ ++T + E N +Y + S +
Sbjct: 167 QTVRFTCKSHGFSPRN--ISLKWFKNGNELPASQTSVEPEG-NVSYSISSTTEVLLAPGD 223
Query: 711 KGKEFKCKVNNVDL----PAPITRTISKAIGQSREPQVYTLPPPAEELSRSKVTLTCLVI 878
+ C+V +V L P T +S+ I +V PP S+V +TCLV
Sbjct: 224 VHSQVICEVAHVTLQGGPPLRGTANLSETIRVPPTLEVTQQPPTG-----SQVNVTCLVK 278
Query: 879 GFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDGTFFLYSKLAVDKARWDHGDKFECAVM 1058
FYP + + W N T T ++ DGTF S L V+ + C V
Sbjct: 279 KFYPQRLQLTWLENRNVSRTETASTL--MENKDGTFNRTSWLLVNSSAHREAVLLTCQVE 336
Query: 1059 HE---ALHNHYTQKSIS--KTQG 1112
H+ A+ +YT + ++ K QG
Sbjct: 337 HDGQPAVTKNYTLEVVTHQKEQG 359
>ref|NP_001107166.1| SLA class II histocompatibility antigen, DQ haplotype C beta chain
precursor [Sus scrofa].
Length = 261
Score = 48.1 bits (113), Expect = 1e-05
Identities = 31/92 (33%), Positives = 43/92 (46%)
Frame = +3
Query: 801 EPQVYTLPPPAEELSRSKVTLTCLVIGFYPPDIHVEWKSNGQPEPENTYRTTPPQQDVDG 980
+P V P AE L+ + L C V FYP + V+W NGQ E +TP ++ D
Sbjct: 128 QPTVTISPSKAEALNHHNL-LVCAVTDFYPSQVKVQWFRNGQEETAGVV-STPLIRNGDW 185
Query: 981 TFFLYSKLAVDKARWDHGDKFECAVMHEALHN 1076
T Y L + + GD + C V H +L N
Sbjct: 186 T---YQVLVMLEMNLQRGDVYTCRVEHSSLQN 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,772,322
Number of extensions: 1072872
Number of successful extensions: 4656
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4596
Number of HSP's successfully gapped: 13
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0039_B08
(1257 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896171.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 420 e-115
gb|GL896389.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 141 1e-30
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 141 1e-30
gb|GL896490.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 109 4e-21
>gb|GL896171.1| Sus scrofa unplaced genomic scaffold chrU_scaffold538
Length = 591
Score = 420 bits (212), Expect = e-115
Identities = 281/304 (92%)
Strand = Plus / Plus
Query: 483 tcggtcttcatcttccctccaaaacccaaggacaccctcatgatctcccagacccccgag 542
||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||| ||
Sbjct: 230 tcggtcttcctcttccctccaaaacccaaggacatcctcatgatctcccggacacccaag 289
Query: 543 gtcacgtgcgtggtggtggacgtcagcaaggagcacgccgaggtccagttctcctggtac 602
||||||||||||||||||||||| ||| ||||| | || || ||||||||||||||||||
Sbjct: 290 gtcacgtgcgtggtggtggacgtgagccaggaggaggctgaagtccagttctcctggtac 349
Query: 603 gtggacggcgtagaggtgcacacggccgagacgagaccaaaggaggagcagttcaacagc 662
|||||||||||| || || |||||||| ||||||| |||| |||||||||||||||||||
Sbjct: 350 gtggacggcgtacagttgtacacggcccagacgaggccaatggaggagcagttcaacagc 409
Query: 663 acctaccgtgtggtcagcgtcctgcccatccagcaccaggactggctgaaggggaaggag 722
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acctaccgcgtggtcagcgtcctgcccatccagcaccaggactggctgaaggggaaggag 469
Query: 723 ttcaagtgcaaggtcaacaacgtagacctcccagcccccatcacgaggaccatctccaag 782
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 470 ttcaagtgcaaggtcaacaacaaagacctcctttcccccatcacgaggaccatctccaag 529
Query: 783 gcta 786
||||
Sbjct: 530 gcta 533
>gb|GL896389.1| Sus scrofa unplaced genomic scaffold chrU_scaffold734
Length = 255
Score = 141 bits (71), Expect = 1e-30
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 834 gaggagctgtccaggagcaaagtcacgctaacctgcctggtcattggcttctacccacct 893
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 255 gaggagctgtccaggagcaaagtcaccgtaacctgcctggtcattggcttctacccacct 196
Query: 894 gacatccatgttgagtgga 912
|||||||||||||||||||
Sbjct: 195 gacatccatgttgagtgga 177
Score = 127 bits (64), Expect = 2e-26
Identities = 73/76 (96%)
Strand = Plus / Minus
Query: 994 acagcaaactcgcggtggacaaggcaagatgggaccatggagacaaatttgagtgtgcgg 1053
||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 76 acagcaagctcgcggtggacaaggcaagatgggaccatggagaaacatttgagtgtgcgg 17
Query: 1054 tgatgcacgaggctct 1069
||||||||||||||||
Sbjct: 16 tgatgcacgaggctct 1
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 141 bits (71), Expect = 1e-30
Identities = 80/83 (96%)
Strand = Plus / Minus
Query: 1 tctccagagacaactcccagaacacggcctatgtgcaaatgaatagcctgagaaccgaag 60
||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 2548 tctccagcgacaactcccagaacacggcctatctgcaaatgaacagcctgagaaccgaag 2489
Query: 61 acacggcccgctattactgtgca 83
|||||||||||||||||||||||
Sbjct: 2488 acacggcccgctattactgtgca 2466
>gb|GL896490.1| Sus scrofa unplaced genomic scaffold chrU_scaffold825
Length = 298
Score = 109 bits (55), Expect = 4e-21
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 341 cgtgccggccagcagcctgtccagcaagagctacacctgcaatgtcaaccacccggccac 400
|||| |||||||||||||||||| | ||||||||| ||||| ||| |||||||||||||
Sbjct: 211 cgtggcggccagcagcctgtccaccctgagctacacgtgcaacgtctaccacccggccac 270
Query: 401 caccaccaaggtggacaagcgtgttgg 427
|| ||||||||||||||||||||||||
Sbjct: 271 caacaccaaggtggacaagcgtgttgg 297
Score = 107 bits (54), Expect = 1e-20
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 147 ccatcggtctaccctctggccccctgcggcagggacgtgtctggccctaacgtggccttg 206
|||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 38 ccatcggtctaccctctggccccctgtggcagggacgtgtctgatcataacgtggccttg 97
Query: 207 ggctgcctgg 216
||||||||||
Sbjct: 98 ggctgcctgg 107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,428,033
Number of extensions: 111
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 6
Length of query: 1257
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1236
Effective length of database: 2,808,413,156
Effective search space: 3471198660816
Effective search space used: 3471198660816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)