Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0090_E10
(1714 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070693.1| protein YIPF5 [Sus scrofa]. 495 e-140
Alignment gi|XP_003128998.1| PREDICTED: protein YIPF7-like [Sus scrofa]. 301 7e-82
>ref|NP_001070693.1| protein YIPF5 [Sus scrofa].
Length = 257
Score = 495 bits (1275), Expect = e-140
Identities = 244/257 (94%), Positives = 244/257 (94%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ
Sbjct: 1 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 60
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
PYTGQIF FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS
Sbjct: 61 PYTGQIFQPTQAYTPTAPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 240
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>ref|XP_003128998.1| PREDICTED: protein YIPF7-like [Sus scrofa].
Length = 273
Score = 301 bits (771), Expect = 7e-82
Identities = 155/257 (60%), Positives = 188/257 (73%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
MS ++DFYQ++Y+I++Q Q + G Y + F+P +M P
Sbjct: 19 MSNLGQFDSDFYQSNYTIENQEQSGNEPHAYGNLYESRKQQASEQPPSAFIPSEMFIPSG 78
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
Y+GQ F Y ++F++EPPLLEELGINFDHIWQKTLTVL+PLK ADGS
Sbjct: 79 -YSGQ-FLQPESNPDYYSQSSYIDSFDEEPPLLEELGINFDHIWQKTLTVLNPLKPADGS 136
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDL GP++F +A G TLLLAGK+QFGYVYG+SAIGCLG+ LLNLMS +GVS+GCV
Sbjct: 137 IMNETDLTGPILFFVALGTTLLLAGKVQFGYVYGMSAIGCLGIHGLLNLMSSSGVSYGCV 196
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPM++LSS A+ FSLQ G VL +IGWCS SASKIFISAL MEGQQLL+
Sbjct: 197 ASVLGYCLLPMVILSSCAIFFSLQDTFGTVLALVVIGWCSLSASKIFISALDMEGQQLLI 256
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYG+FAL++VF
Sbjct: 257 AYPCALLYGLFALLTVF 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,151,533
Number of extensions: 940803
Number of successful extensions: 2709
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2700
Number of HSP's successfully gapped: 2
Length of query: 571
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 467
Effective length of database: 8,754,644
Effective search space: 4088418748
Effective search space used: 4088418748
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0090_E10
(1714 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075800.1| protein YIPF5 [Mus musculus]. 461 e-130
Alignment gi|NP_076273.1| protein YIPF7 [Mus musculus]. 298 7e-81
Alignment gi|NP_080693.2| protein YIPF4 [Mus musculus]. 66 7e-11
>ref|NP_075800.1| protein YIPF5 [Mus musculus].
Length = 257
Score = 461 bits (1186), Expect = e-130
Identities = 226/257 (87%), Positives = 238/257 (92%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
MSGF+NLN+ FYQTSYSID+QSQQ+YDYGGSGGPYSKQYAG DYS QGRFVPPDMMQPQQ
Sbjct: 1 MSGFDNLNSGFYQTSYSIDEQSQQSYDYGGSGGPYSKQYAGCDYSQQGRFVPPDMMQPQQ 60
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
YTGQI+ FYG++FE+EPPLLEELGINFDHIWQKTLTVLHPL+ ADGS
Sbjct: 61 TYTGQIYQPTQAYPPTTPQPFYGDSFEEEPPLLEELGINFDHIWQKTLTVLHPLRAADGS 120
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDLAGP+VFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPVVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPMILLSSFAVVFSLQGMVGI+LTA IIGWCSFSASKIFISALAM+GQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGWCSFSASKIFISALAMDGQQLLV 240
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>ref|NP_076273.1| protein YIPF7 [Mus musculus].
Length = 254
Score = 298 bits (764), Expect = 7e-81
Identities = 160/258 (62%), Positives = 186/258 (72%), Gaps = 1/258 (0%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRF-VPPDMMQPQ 290
MS E + FYQ++Y ID+Q D G Y Y + Q PP+M P
Sbjct: 1 MSNPEQYDMGFYQSNYIIDNQEPSCNDSNAYGNVYG--YREPQATEQPSSPAPPEMFLPS 58
Query: 291 QPYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADG 470
Y GQ+F + F++EPPLLEELGINFDHIWQKTLTVL+P+K ADG
Sbjct: 59 D-YGGQLFQPASNLDYYSQSPSV-DTFDEEPPLLEELGINFDHIWQKTLTVLNPMKPADG 116
Query: 471 SIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGC 650
SIMNETDL GP++FC+A GATLL+AGK QFGYVYG+SAIGCLG+ LLNLMS +GVS+GC
Sbjct: 117 SIMNETDLTGPILFCVALGATLLMAGKAQFGYVYGMSAIGCLGIHALLNLMSNSGVSYGC 176
Query: 651 VASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLL 830
VASVLGYCLLPM+LLSS AV FSLQG +G + II WCS SASKIFISALAMEGQQLL
Sbjct: 177 VASVLGYCLLPMVLLSSCAVFFSLQGTIGTMSALLIITWCSLSASKIFISALAMEGQQLL 236
Query: 831 VAYPCALLYGVFALISVF 884
VAYPCALLYG+FAL++VF
Sbjct: 237 VAYPCALLYGLFALLTVF 254
>ref|NP_080693.2| protein YIPF4 [Mus musculus].
Length = 246
Score = 66.2 bits (160), Expect = 7e-11
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 372 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 542
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 74 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 133
Query: 543 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 716
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 134 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 190
Query: 717 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 866
MV ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 191 GSFEMVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 239
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,381,650
Number of extensions: 1275295
Number of successful extensions: 3728
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3718
Number of HSP's successfully gapped: 3
Length of query: 571
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 464
Effective length of database: 12,403,707
Effective search space: 5755320048
Effective search space used: 5755320048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0090_E10
(1714 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020118.1| protein YIPF5 [Homo sapiens]. 489 e-138
Alignment gi|NP_110426.4| protein YIPF5 [Homo sapiens]. 489 e-138
Alignment gi|NP_872398.2| protein YIPF7 [Homo sapiens]. 303 2e-82
Alignment gi|NP_115688.1| protein YIPF4 [Homo sapiens]. 64 3e-10
>ref|NP_001020118.1| protein YIPF5 [Homo sapiens].
Length = 257
Score = 489 bits (1258), Expect = e-138
Identities = 239/257 (92%), Positives = 243/257 (94%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
MSGFENLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYS QGRFVPPDMMQPQQ
Sbjct: 1 MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ 60
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
PYTGQI+ FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS
Sbjct: 61 PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>ref|NP_110426.4| protein YIPF5 [Homo sapiens].
Length = 257
Score = 489 bits (1258), Expect = e-138
Identities = 239/257 (92%), Positives = 243/257 (94%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
MSGFENLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYS QGRFVPPDMMQPQQ
Sbjct: 1 MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ 60
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
PYTGQI+ FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS
Sbjct: 61 PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>ref|NP_872398.2| protein YIPF7 [Homo sapiens].
Length = 280
Score = 303 bits (777), Expect = 2e-82
Identities = 156/259 (60%), Positives = 193/259 (74%), Gaps = 2/259 (0%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYS--KQYAGYDYSHQGRFVPPDMMQP 287
MS ++DFYQ++++ID+Q Q D G Y KQ AG + FVP +M+
Sbjct: 25 MSNLAQFDSDFYQSNFTIDNQEQSGNDSNAYGNLYGSRKQQAG-EQPQPASFVPSEMLM- 82
Query: 288 QQPYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVAD 467
Y GQ F Y ++F++EPPLLEELGI+FDHIWQKTLTVL+P+K D
Sbjct: 83 SSGYAGQFFQPASNSDYYSQSP-YIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVD 141
Query: 468 GSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFG 647
GSIMNETDL GP++FC+A GATLLLAGK+QFGYVYG+SAIGCL + LLNLMS +GVS+G
Sbjct: 142 GSIMNETDLTGPILFCVALGATLLLAGKVQFGYVYGMSAIGCLVIHALLNLMSSSGVSYG 201
Query: 648 CVASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQL 827
CVASVLGYCLLPM++LS A+ FSLQG+ GI+ + IIGWCS SASKIFI+AL MEGQQL
Sbjct: 202 CVASVLGYCLLPMVILSGCAMFFSLQGIFGIMSSLVIIGWCSLSASKIFIAALHMEGQQL 261
Query: 828 LVAYPCALLYGVFALISVF 884
LVAYPCA+LYG+FAL+++F
Sbjct: 262 LVAYPCAILYGLFALLTIF 280
>ref|NP_115688.1| protein YIPF4 [Homo sapiens].
Length = 244
Score = 64.3 bits (155), Expect = 3e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 372 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 542
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 72 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 131
Query: 543 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 716
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 132 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPVLLVV 188
Query: 717 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 866
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 189 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 237
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,961,790
Number of extensions: 1471005
Number of successful extensions: 4363
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4343
Number of HSP's successfully gapped: 4
Length of query: 571
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 463
Effective length of database: 14,737,052
Effective search space: 6823255076
Effective search space used: 6823255076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0090_E10
(1714 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029715.1| protein YIPF5 [Bos taurus]. 489 e-138
Alignment gi|NP_001096728.1| protein YIPF7 [Bos taurus]. 317 3e-86
Alignment gi|XP_002691265.1| PREDICTED: Yip1 domain family, member 4-like... 65 2e-10
Alignment gi|XP_872146.3| PREDICTED: Yip1 domain family, member 4-like [B... 65 2e-10
>ref|NP_001029715.1| protein YIPF5 [Bos taurus].
Length = 257
Score = 489 bits (1258), Expect = e-138
Identities = 239/257 (92%), Positives = 243/257 (94%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
MSGF+NLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYSHQGRFVP DMMQPQQ
Sbjct: 1 MSGFDNLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSHQGRFVPADMMQPQQ 60
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
PYTGQIF FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS
Sbjct: 61 PYTGQIFQPTQTYTPTTPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>ref|NP_001096728.1| protein YIPF7 [Bos taurus].
Length = 255
Score = 317 bits (811), Expect = 3e-86
Identities = 161/257 (62%), Positives = 191/257 (74%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
MS ++DFYQ++Y+ID+Q Q D G Y + Q FVP +M+
Sbjct: 1 MSNLGQFDSDFYQSNYTIDNQEQTCNDSNACGNLYGSRKQQASEQPQPAFVPAEMLA-SS 59
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
Y+GQ F Y ++FE+EPPLLEELGINFDHIWQKTLTVL+P+K ADGS
Sbjct: 60 GYSGQFFQPASNQDYYSPSS-YIDSFEEEPPLLEELGINFDHIWQKTLTVLNPMKPADGS 118
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDL GP++FC+A GATLLLAGK+QFGYVYG+SAIGCLG+ LLNLMS +GVS+GCV
Sbjct: 119 IMNETDLTGPILFCMALGATLLLAGKVQFGYVYGMSAIGCLGIHALLNLMSSSGVSYGCV 178
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPM++LSS A+ FSLQG G V IIGWCS SASKIF SALAMEGQQLL+
Sbjct: 179 ASVLGYCLLPMVILSSCAIFFSLQGTFGTVSALVIIGWCSLSASKIFTSALAMEGQQLLI 238
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYG+FAL++VF
Sbjct: 239 AYPCALLYGLFALVTVF 255
>ref|XP_002691265.1| PREDICTED: Yip1 domain family, member 4-like [Bos taurus].
Length = 339
Score = 64.7 bits (156), Expect = 2e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 372 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 542
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 167 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 226
Query: 543 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 716
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 227 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 283
Query: 717 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 866
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 284 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 332
>ref|XP_872146.3| PREDICTED: Yip1 domain family, member 4-like [Bos taurus].
Length = 365
Score = 64.7 bits (156), Expect = 2e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 372 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 542
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 193 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 252
Query: 543 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 716
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 253 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 309
Query: 717 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 866
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 310 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 358
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,332,812
Number of extensions: 1450245
Number of successful extensions: 4531
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4518
Number of HSP's successfully gapped: 4
Length of query: 571
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 463
Effective length of database: 14,107,870
Effective search space: 6531943810
Effective search space used: 6531943810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0090_E10
(1714 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535226.1| PREDICTED: similar to smooth muscle cell associ... 487 e-137
Alignment gi|XP_532367.1| PREDICTED: similar to Yip1 domain family, membe... 300 2e-81
Alignment gi|XP_858613.1| PREDICTED: similar to Yip1 domain family, membe... 131 2e-30
Alignment gi|XP_532925.1| PREDICTED: similar to Yip1 domain family, membe... 65 3e-10
>ref|XP_535226.1| PREDICTED: similar to smooth muscle cell associated protein 5
[Canis familiaris].
Length = 257
Score = 487 bits (1254), Expect = e-137
Identities = 238/257 (92%), Positives = 243/257 (94%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPYSKQYAGYDYSHQGRFVPPDMMQPQQ 293
M+GFENLNTDFYQTSYSIDDQSQQ+YDYGGSGGPYSKQYAGYDYS QGRFVPP+MMQPQQ
Sbjct: 1 MAGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPEMMQPQQ 60
Query: 294 PYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 473
PYTGQIF FYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS
Sbjct: 61 PYTGQIFQPTQAYTPTTPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
Query: 474 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 653
IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 654 ASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLV 833
ASVLGYCLLPMILLSSFAV+FSLQGMVGI+LTAGIIGWCSFSASKIFISALAMEGQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
Query: 834 AYPCALLYGVFALISVF 884
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>ref|XP_532367.1| PREDICTED: similar to Yip1 domain family, member 7 isoform 1 [Canis
familiaris].
Length = 255
Score = 300 bits (769), Expect = 2e-81
Identities = 158/259 (61%), Positives = 190/259 (73%), Gaps = 2/259 (0%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPY--SKQYAGYDYSHQGRFVPPDMMQP 287
MS ++DFYQ++Y+ID+Q + D G Y KQ AG Q F+PP+M+ P
Sbjct: 1 MSNLGQFDSDFYQSNYTIDNQELSSEDSNAYGHLYVSGKQPAGDQ--RQPAFIPPEMLLP 58
Query: 288 QQPYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVAD 467
Q+F Y ++FE+EPPLLEELGINF+HIWQKTLTVL+PLK AD
Sbjct: 59 SGG-EAQLFQPASSPDYYSQSS-YVDSFEEEPPLLEELGINFNHIWQKTLTVLNPLKPAD 116
Query: 468 GSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFG 647
GSIMNETDL GP++FC+ GATLLLAGK+QFGYVYG+SA+GCLG+ LL+LMS G+S G
Sbjct: 117 GSIMNETDLTGPILFCVTLGATLLLAGKVQFGYVYGLSAVGCLGIHTLLSLMSSPGLSCG 176
Query: 648 CVASVLGYCLLPMILLSSFAVVFSLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQL 827
CVASVLGYCLLPM++LS +VFSLQG G VL IIGWCS SASKIFISAL M+GQQL
Sbjct: 177 CVASVLGYCLLPMVILSGCGLVFSLQGTFGTVLALVIIGWCSLSASKIFISALDMKGQQL 236
Query: 828 LVAYPCALLYGVFALISVF 884
LVAYPCAL YG+FAL++VF
Sbjct: 237 LVAYPCALFYGLFALLTVF 255
>ref|XP_858613.1| PREDICTED: similar to Yip1 domain family, member 7 isoform 2 [Canis
familiaris].
Length = 147
Score = 131 bits (330), Expect = 2e-30
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Frame = +3
Query: 114 MSGFENLNTDFYQTSYSIDDQSQQTYDYGGSGGPY--SKQYAGYDYSHQGRFVPPDMMQP 287
MS ++DFYQ++Y+ID+Q + D G Y KQ AG Q F+PP+M+ P
Sbjct: 1 MSNLGQFDSDFYQSNYTIDNQELSSEDSNAYGHLYVSGKQPAGDQ--RQPAFIPPEMLLP 58
Query: 288 QQPYTGQIFXXXXXXXXXXXXXFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVAD 467
Q+F Y ++FE+EPPLLEELGINF+HIWQKTLTVL+PLK AD
Sbjct: 59 SGG-EAQLFQPASSPDYYSQSS-YVDSFEEEPPLLEELGINFNHIWQKTLTVLNPLKPAD 116
Query: 468 GSIMNETDLAGPMVFCLAFGATLLL 542
GSIMNETDL GP++FC+ GATLLL
Sbjct: 117 GSIMNETDLTGPILFCVTLGATLLL 141
>ref|XP_532925.1| PREDICTED: similar to Yip1 domain family, member 4 [Canis
familiaris].
Length = 244
Score = 64.7 bits (156), Expect = 3e-10
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Frame = +3
Query: 372 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 542
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 72 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 131
Query: 543 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVVF 716
QF V I I G + L + G V++G V V+GY LLP+I+++ +V
Sbjct: 132 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLVV 188
Query: 717 SLQGMVGIVLTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 866
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 189 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 237
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,636,417
Number of extensions: 1471840
Number of successful extensions: 4668
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4651
Number of HSP's successfully gapped: 4
Length of query: 571
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 463
Effective length of database: 15,274,216
Effective search space: 7071962008
Effective search space used: 7071962008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0090_E10
(1714 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895451.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1915 0.0
gb|GL896100.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 335 5e-89
Sscrofa_Chr02 78 2e-11
Sscrofa_Chr08 66 7e-08
>gb|GL895451.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4014
Length = 12201
Score = 1915 bits (966), Expect = 0.0
Identities = 969/970 (99%)
Strand = Plus / Minus
Query: 725 aggaatggtaggaatcgttctcactgctggaatcattggatggtgtagtttttctgcttc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9507 aggaatggtaggaatcgttctcactgctggaatcattggatggtgtagtttttctgcttc 9448
Query: 785 caagatttttatctctgcattagccatggaaggccaacagcttctggtagcgtatccttg 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447 caagatttttatctctgcattagccatggaaggccaacagcttctggtagcgtatccttg 9388
Query: 845 tgctctgttatacggagtctttgccctcatttccgttttttgagccgagtttgtctggaa 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9387 tgctctgttatacggagtctttgccctcatttccgttttttgagccgagtttgtctggaa 9328
Query: 905 tgtggacatcattgggccatatatcaaaaaggacttggaactcttaaatcggaccagcaa 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9327 tgtggacatcattgggccatatatcaaaaaggacttggaactcttaaatcggaccagcaa 9268
Query: 965 actgcaaactacagtgcaactctcagcagatctgatgtttgactcttggagcaatggaag 1024
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9267 actgcaaactacagtgccactctcagcagatctgatgtttgactcttggagcaatggaag 9208
Query: 1025 taaacgtgtatcttttgttcatttttatagaacttttgaatactatattggatttacctg 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9207 taaacgtgtatcttttgttcatttttatagaacttttgaatactatattggatttacctg 9148
Query: 1085 cagttgactaggtttaagtgtttgtgcttgtacagataagtgctatttctttcctgttcc 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9147 cagttgactaggtttaagtgtttgtgcttgtacagataagtgctatttctttcctgttcc 9088
Query: 1145 tgcagccttagaggaacaacattttttgttgctaattatatattacaatgttttgataga 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9087 tgcagccttagaggaacaacattttttgttgctaattatatattacaatgttttgataga 9028
Query: 1205 tttttatcaactatgggaaaccaaccacagacttgatagtctttcttaaaaacaacccat 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9027 tttttatcaactatgggaaaccaaccacagacttgatagtctttcttaaaaacaacccat 8968
Query: 1265 agtaaagaagatgtgaaacttggagaaatgtttttccaaggaactaggaaagaaaaatgg 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8967 agtaaagaagatgtgaaacttggagaaatgtttttccaaggaactaggaaagaaaaatgg 8908
Query: 1325 cctgtattctcacatcagatgcattgaagcaaaaaagtgatcccagttgtaaagttttat 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8907 cctgtattctcacatcagatgcattgaagcaaaaaagtgatcccagttgtaaagttttat 8848
Query: 1385 gagtttgcacttcagaatttgacattcctctaaattatctcatggaattttggctaaaat 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8847 gagtttgcacttcagaatttgacattcctctaaattatctcatggaattttggctaaaat 8788
Query: 1445 tcagcagtacagttaattcacagtctaccttattgtagacatgaaatgtgaaaatgttta 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8787 tcagcagtacagttaattcacagtctaccttattgtagacatgaaatgtgaaaatgttta 8728
Query: 1505 gacattagcgttaactaaaccatagtgacccagcctggctgcgttaatgctcagagttgg 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8727 gacattagcgttaactaaaccatagtgacccagcctggctgcgttaatgctcagagttgg 8668
Query: 1565 atctctgtttcccaggagaaagaaagtcactaaccttttttgagaaaaatatttagtgtc 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8667 atctctgtttcccaggagaaagaaagtcactaaccttttttgagaaaaatatttagtgtc 8608
Query: 1625 agttttggtattgcaattatcaatgtaaactgcatttgatgcttattattaaaattttcc 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8607 agttttggtattgcaattatcaatgtaaactgcatttgatgcttattattaaaattttcc 8548
Query: 1685 cagttaattt 1694
||||||||||
Sbjct: 8547 cagttaattt 8538
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 542 ggctggcaaaatccagtttggctatgtatatggcatcagcgcaattggatgcctgggaat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10961 ggctggcaaaatccagtttggctatgtatatggcatcagcgcaattggatgcctgggaat 10902
Query: 602 gttttgtttattaaacttaatgagtatgactggtgtttcctttggttgtgtggcaagtgt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10901 gttttgtttattaaacttaatgagtatgactggtgtttcctttggttgtgtggcaagtgt 10842
Query: 662 ccttggatattgtcttcttcccatgatcctactttccagctttgcagtggtattttcttt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10841 ccttggatattgtcttcttcccatgatcctactttccagctttgcagtggtattttcttt 10782
Query: 722 aca 724
|||
Sbjct: 10781 aca 10779
>gb|GL896100.1| Sus scrofa unplaced genomic scaffold chrU_scaffold474
Length = 11817
Score = 335 bits (169), Expect = 5e-89
Identities = 172/173 (99%)
Strand = Plus / Minus
Query: 224 acagtatgctggctatgactattcgcatcaaggccgatttgtccctccagacatgatgca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2096 acagtatgctggctatgactattcgcatcaaggccgatttgtccctccagacatgatgca 2037
Query: 284 gccacagcagccttacacggggcagattttccagccaactcaggcgtatactccaactgc 343
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2036 gccacaacagccttacacggggcagattttccagccaactcaggcgtatactccaactgc 1977
Query: 344 acctcagccgttctatggaaacaactttgaagatgagccacctttgttagaag 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976 acctcagccgttctatggaaacaactttgaagatgagccacctttgttagaag 1924
Score = 287 bits (145), Expect = 1e-74
Identities = 148/149 (99%)
Strand = Plus / Minus
Query: 395 agaattaggtatcaattttgaccacatctggcaaaaaacactgacagtgttacacccgtt 454
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 agaattgggtatcaattttgaccacatctggcaaaaaacactgacagtgttacacccgtt 1041
Query: 455 gaaagtagcagatggcagtatcatgaatgagactgatttggcaggaccaatggttttttg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 gaaagtagcagatggcagtatcatgaatgagactgatttggcaggaccaatggttttttg 981
Query: 515 ccttgcctttggagccactttgttactgg 543
|||||||||||||||||||||||||||||
Sbjct: 980 ccttgcctttggagccactttgttactgg 952
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 102 agatcatttgccatgtcaggctttgaaaacctaaacacggatttctaccagacgagttac 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9074 agatcatttgccatgtcaggctttgaaaacctaaacacggatttctaccagacgagttac 9015
Query: 162 agcatcgatgaccagtcacagcaaacctatgactatggaggaagtggaggaccctatagc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9014 agcatcgatgaccagtcacagcaaacctatgactatggaggaagtggaggaccctatagc 8955
Query: 222 aa 223
||
Sbjct: 8954 aa 8953
>Sscrofa_Chr02
|| Length = 162569375
Score = 77.8 bits (39), Expect = 2e-11
Identities = 113/134 (84%), Gaps = 4/134 (2%)
Strand = Plus / Minus
Query: 1326 ctgtattctcacatcagatgca-ttgaagcaaaaaagtgatcccagttgtaaagttttat 1384
||||||| ||| ||||||||| |||||| |||||||||||||| | ||| ||||| ||
Sbjct: 25368286 ctgtattttcaagtcagatgcacttgaagtaaaaaagtgatccctat-gtagagtttgat 25368228
Query: 1385 gagtttgcacttcagaa--tttgacattcctctaaattatctcatggaattttggctaaa 1442
|||||| | ||||| || |||||||||||| |||||||||||| | |||||| ||| ||
Sbjct: 25368227 gagtttacccttcaaaaaatttgacattcctttaaattatctcaggaaatttttgctgaa 25368168
Query: 1443 attcagcagtacag 1456
||| ||||||||||
Sbjct: 25368167 attgagcagtacag 25368154
>Sscrofa_Chr08
|| Length = 148491826
Score = 65.9 bits (33), Expect = 7e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 408 aattttgaccacatctggcaaaaaacactgacagtgttacacccgttgaaagtagcagat 467
|||||||||||||| ||||||||||| |||| |||||| |||| ||||| |||||||
Sbjct: 36848370 aattttgaccacatatggcaaaaaaccttgacggtgttaaacccactgaaaccagcagat 36848311
Query: 468 ggcagtatcatgaatga 484
||||| || ||||||||
Sbjct: 36848310 ggcagcattatgaatga 36848294
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,089,450
Number of extensions: 494
Number of successful extensions: 494
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 7
Length of query: 1714
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1692
Effective length of database: 2,808,408,574
Effective search space: 4751827307208
Effective search space used: 4751827307208
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)