Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0126_D09
(2119 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192975.2| egl nine homolog 1 [Bos taurus]. 330 3e-90
Alignment gi|NP_001094634.1| egl nine homolog 3 [Bos taurus]. 296 5e-80
Alignment gi|NP_001095663.1| EGL nine (C.elegans) homolog 2 [Bos taurus]. 263 6e-70
Alignment gi|XP_002698828.1| PREDICTED: egl nine homolog 1-like [Bos taur... 202 1e-51
Alignment gi|XP_002698848.1| PREDICTED: egl nine homolog 1-like [Bos taur... 132 2e-30
>ref|NP_001192975.2| egl nine homolog 1 [Bos taurus].
Length = 420
Score = 330 bits (846), Expect = 3e-90
Identities = 154/233 (66%), Positives = 187/233 (80%)
Frame = +3
Query: 798 PAAPERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAI 977
P +LAL+YIVPCM +GICV D FLG G ++ EV AL G+ DGQLVSQ++
Sbjct: 181 PLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSD 240
Query: 978 PPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGN 1157
+ IRGD+I W+EG EPGC +IG LM ++D +IRHC G+LG+Y INGRTKAMVACYPGN
Sbjct: 241 SSKDIRGDKITWIEGKEPGCETIGLLMNNMDDLIRHCNGKLGNYKINGRTKAMVACYPGN 300
Query: 1158 GLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIF 1337
G GYVRHVDNP+GDGRC+TCIYYLN++WD KV GG+L+IFPEG+ A+IEP FDRLL F
Sbjct: 301 GTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF 360
Query: 1338 WSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLAGQKGVQVPVSQPT 1496
WSD+RNPHEV+PAYATRYAITVWYFDA ERA AK KY L G+KGV+V +++P+
Sbjct: 361 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKY-LTGEKGVRVELNKPS 412
>ref|NP_001094634.1| egl nine homolog 3 [Bos taurus].
Length = 239
Score = 296 bits (758), Expect = 5e-80
Identities = 132/215 (61%), Positives = 168/215 (78%), Gaps = 1/215 (0%)
Frame = +3
Query: 810 ERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRA-IPPR 986
E++AL+YIVPC+ G C D+FLG +G VL V+ L G LRDGQL RA + R
Sbjct: 12 EKIALEYIVPCLHEVGFCYLDNFLGEVVGDCVLERVKQLHCNGALRDGQLAGPRAGVSKR 71
Query: 987 SIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGNGLG 1166
+RGDQI W+ G+E GC +I L++ +D ++ +C RLG Y + R+KAMVACYPGNG G
Sbjct: 72 HLRGDQITWIGGNEEGCEAINYLLSLIDRLVLYCGSRLGKYYVKERSKAMVACYPGNGTG 131
Query: 1167 YVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD 1346
YVRHVDNP+GDGRCITCIYYLN+NWD K HGG+L+IFPEG+ +A++EP+FDRLL FWSD
Sbjct: 132 YVRHVDNPNGDGRCITCIYYLNKNWDAKRHGGVLRIFPEGKSFIADVEPIFDRLLFFWSD 191
Query: 1347 QRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQ 1451
+RNPHEV+P+YATRYA+TVWYFDA+ERA AK K++
Sbjct: 192 RRNPHEVQPSYATRYAMTVWYFDAEERAEAKKKFR 226
>ref|NP_001095663.1| EGL nine (C.elegans) homolog 2 [Bos taurus].
Length = 125
Score = 263 bits (671), Expect = 6e-70
Identities = 123/125 (98%), Positives = 124/125 (99%), Gaps = 1/125 (0%)
Frame = +3
Query: 1134 MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP 1313
MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP
Sbjct: 1 MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP 60
Query: 1314 LFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLA-GQKGVQVPVSQ 1490
LFDRLLIFWSD+RNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLA GQKGVQVPVSQ
Sbjct: 61 LFDRLLIFWSDRRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLASGQKGVQVPVSQ 120
Query: 1491 PTTPT 1505
PTTPT
Sbjct: 121 PTTPT 125
>ref|XP_002698828.1| PREDICTED: egl nine homolog 1-like [Bos taurus].
Length = 128
Score = 202 bits (514), Expect = 1e-51
Identities = 91/121 (75%), Positives = 107/121 (88%)
Frame = +3
Query: 1134 MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP 1313
MVACYPGNG GYVRHVDNP+GDGRC+TCIYYLN++WD KV GG+L+IFPEG+ A+IEP
Sbjct: 1 MVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEP 60
Query: 1314 LFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLAGQKGVQVPVSQP 1493
FDRLL FWSD+RNPHEV+PAYATRYAITVWYFDA ERA AK KY L G+KGV+V +++P
Sbjct: 61 KFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKY-LTGEKGVRVELNKP 119
Query: 1494 T 1496
+
Sbjct: 120 S 120
>ref|XP_002698848.1| PREDICTED: egl nine homolog 1-like [Bos taurus].
Length = 295
Score = 132 bits (331), Expect = 2e-30
Identities = 63/114 (55%), Positives = 80/114 (70%)
Frame = +3
Query: 798 PAAPERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAI 977
P +LAL+YIVPCM +GICV D FLG G ++ EV AL G+ DGQLVSQ++
Sbjct: 181 PLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSD 240
Query: 978 PPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMV 1139
+ IRGD+I W+EG EPGC +IG LM ++D +IRHC G+LG+Y INGRTK V
Sbjct: 241 SSKDIRGDKITWIEGKEPGCETIGLLMNNMDDLIRHCNGKLGNYKINGRTKVSV 294
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 89,684,309
Number of extensions: 2921809
Number of successful extensions: 14222
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 14125
Number of HSP's successfully gapped: 5
Length of query: 706
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 597
Effective length of database: 14,074,782
Effective search space: 8402644854
Effective search space used: 8402644854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA THY01_0126_D09
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0126_D09
(2119 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541609.1| PREDICTED: similar to EGL nine (C.elegans) homo... 639 0.0
Alignment gi|XP_866773.1| PREDICTED: similar to EGL nine (C.elegans) homo... 629 e-180
Alignment gi|XP_546089.2| PREDICTED: similar to egl nine homolog 1 [Canis... 329 6e-90
Alignment gi|XP_537408.2| PREDICTED: similar to Egl nine homolog 3, mitoc... 298 2e-80
Alignment gi|XP_866785.1| PREDICTED: similar to EGL nine homolog 2 isofor... 263 6e-70
>ref|XP_541609.1| PREDICTED: similar to EGL nine (C.elegans) homolog 2 isoform 1
isoform 1 [Canis familiaris].
Length = 405
Score = 639 bits (1648), Expect = 0.0
Identities = 322/385 (83%), Positives = 323/385 (83%), Gaps = 4/385 (1%)
Frame = +3
Query: 363 VSEPLEPNRARMGVESYLPCPLLSSYHCXXXXXXXXXXXXXXXXXXXXXXXXXLREGFGG 542
VSEPLEP RARMGVESYLPCPLL SYH LREGFGG
Sbjct: 21 VSEPLEPGRARMGVESYLPCPLLPSYHRPGAPGEASAGSGTPRATATSTTASPLREGFGG 80
Query: 543 QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWARXXXX 722
QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAE GGDAPAPSKR WAR
Sbjct: 81 QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEDGGDAPAPSKRSWARQENR 140
Query: 723 XXXXXXXXXXXXXXXXXXXL---REEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAAL 893
REEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAAL
Sbjct: 141 EAEAEGEGGMGCSSGNGEASVGPREEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAAL 200
Query: 894 GGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDA 1073
GG VLAEVEALKR GRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIG LMAHVDA
Sbjct: 201 GGCVLAEVEALKRSGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGVLMAHVDA 260
Query: 1074 VIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKV 1253
VIRHCAGRLG YVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKV
Sbjct: 261 VIRHCAGRLGGYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKV 320
Query: 1254 HGGLLQIFPEGRPVVANIEPLFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERAA 1433
HGGLLQIFPEGRPVVANIEPLFDRLLIFWSD+RNPHEVKPAYATRYAITVWYFDAKERAA
Sbjct: 321 HGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKPAYATRYAITVWYFDAKERAA 380
Query: 1434 AKDKYQLA-GQKGVQVPVSQPTTPT 1505
AKDKYQLA GQKGVQVPVSQPTTPT
Sbjct: 381 AKDKYQLASGQKGVQVPVSQPTTPT 405
>ref|XP_866773.1| PREDICTED: similar to EGL nine (C.elegans) homolog 2 isoform 1
isoform 2 [Canis familiaris].
Length = 419
Score = 629 bits (1623), Expect = e-180
Identities = 322/399 (80%), Positives = 323/399 (80%), Gaps = 18/399 (4%)
Frame = +3
Query: 363 VSEPLEPNRARMGVESYLPCPLLSSYHCXXXXXXXXXXXXXXXXXXXXXXXXXLREGFGG 542
VSEPLEP RARMGVESYLPCPLL SYH LREGFGG
Sbjct: 21 VSEPLEPGRARMGVESYLPCPLLPSYHRPGAPGEASAGSGTPRATATSTTASPLREGFGG 80
Query: 543 QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWARXXXX 722
QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAE GGDAPAPSKR WAR
Sbjct: 81 QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEDGGDAPAPSKRSWARQENR 140
Query: 723 XXXXXXXXXXXXXXXXXXXL---REEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAAL 893
REEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAAL
Sbjct: 141 EAEAEGEGGMGCSSGNGEASVGPREEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAAL 200
Query: 894 GGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDA 1073
GG VLAEVEALKR GRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIG LMAHVDA
Sbjct: 201 GGCVLAEVEALKRSGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGVLMAHVDA 260
Query: 1074 VIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK- 1250
VIRHCAGRLG YVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK
Sbjct: 261 VIRHCAGRLGGYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKV 320
Query: 1251 -------------VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDQRNPHEVKPAYATRY 1391
VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD+RNPHEVKPAYATRY
Sbjct: 321 GASFLPHPLACPQVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKPAYATRY 380
Query: 1392 AITVWYFDAKERAAAKDKYQLA-GQKGVQVPVSQPTTPT 1505
AITVWYFDAKERAAAKDKYQLA GQKGVQVPVSQPTTPT
Sbjct: 381 AITVWYFDAKERAAAKDKYQLASGQKGVQVPVSQPTTPT 419
>ref|XP_546089.2| PREDICTED: similar to egl nine homolog 1 [Canis familiaris].
Length = 449
Score = 329 bits (844), Expect = 6e-90
Identities = 153/233 (65%), Positives = 187/233 (80%)
Frame = +3
Query: 798 PAAPERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAI 977
P +LAL+YIVPCM +GICV D FLG G ++ EV AL G+ DGQLVSQ++
Sbjct: 210 PLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSD 269
Query: 978 PPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGN 1157
+ IRGD+I W+EG EPGC +IG LM+ +D +IRHC G+LG+Y INGRTKAMVACYPGN
Sbjct: 270 SSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGNYKINGRTKAMVACYPGN 329
Query: 1158 GLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIF 1337
G GYVRHVDNP+GDGRC+TCIYYLN++WD KV GG+L+IFPEG+ A+IEP FDRLL F
Sbjct: 330 GTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF 389
Query: 1338 WSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLAGQKGVQVPVSQPT 1496
WSD+RNPHEV+PAY+TRYAITVWYFDA ERA AK KY L G+KGV+V +++P+
Sbjct: 390 WSDRRNPHEVQPAYSTRYAITVWYFDADERARAKVKY-LTGEKGVRVELNKPS 441
>ref|XP_537408.2| PREDICTED: similar to Egl nine homolog 3, mitochondrial precursor
(Hypoxia inducible factor prolyl hydroxylase 3)
(HIF-prolyl hydroxylase 3) (HIF-PH3) (SM-20) [Canis
familiaris].
Length = 416
Score = 298 bits (762), Expect = 2e-80
Identities = 132/215 (61%), Positives = 169/215 (78%), Gaps = 1/215 (0%)
Frame = +3
Query: 810 ERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRA-IPPR 986
E++AL+YIVPC+ G C D+FLG +G VL V+ L G LRDGQL RA + R
Sbjct: 166 EKIALEYIVPCLHEVGFCYLDNFLGEVVGDCVLERVKQLHCNGALRDGQLAGPRAGVSKR 225
Query: 987 SIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGNGLG 1166
+RGDQI W+ G+E GC +I L++ +D ++ +C RLG Y + R+KAMVACYPGNG G
Sbjct: 226 HLRGDQITWIGGNEEGCEAISFLLSLIDRLVLYCGSRLGKYYVKERSKAMVACYPGNGTG 285
Query: 1167 YVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD 1346
YVRHVDNP+GDGRCITCIYYLN+NWD K+HGG+L+IFPEG+ +A++EP+FDRLL FWSD
Sbjct: 286 YVRHVDNPNGDGRCITCIYYLNKNWDAKLHGGVLRIFPEGKSFIADVEPIFDRLLFFWSD 345
Query: 1347 QRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQ 1451
+RNPHEV+P+YATRYA+TVWYFDA+ERA AK K++
Sbjct: 346 RRNPHEVQPSYATRYAMTVWYFDAEERAEAKKKFR 380
>ref|XP_866785.1| PREDICTED: similar to EGL nine homolog 2 isoform 3 [Canis
familiaris].
Length = 125
Score = 263 bits (671), Expect = 6e-70
Identities = 123/125 (98%), Positives = 124/125 (99%), Gaps = 1/125 (0%)
Frame = +3
Query: 1134 MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP 1313
MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP
Sbjct: 1 MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP 60
Query: 1314 LFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLA-GQKGVQVPVSQ 1490
LFDRLLIFWSD+RNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLA GQKGVQVPVSQ
Sbjct: 61 LFDRLLIFWSDRRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLASGQKGVQVPVSQ 120
Query: 1491 PTTPT 1505
PTTPT
Sbjct: 121 PTTPT 125
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 93,326,153
Number of extensions: 2994369
Number of successful extensions: 15031
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 14924
Number of HSP's successfully gapped: 7
Length of query: 706
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 596
Effective length of database: 15,207,544
Effective search space: 9063696224
Effective search space used: 9063696224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0126_D09
(2119 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444274.1| egl nine homolog 2 [Homo sapiens]. 641 0.0
Alignment gi|NP_542770.2| egl nine homolog 2 [Homo sapiens]. 641 0.0
Alignment gi|NP_071334.1| egl nine homolog 1 [Homo sapiens]. 332 1e-90
Alignment gi|NP_071356.1| egl nine homolog 3 [Homo sapiens]. 297 2e-80
>ref|NP_444274.1| egl nine homolog 2 [Homo sapiens].
Length = 407
Score = 641 bits (1654), Expect = 0.0
Identities = 322/386 (83%), Positives = 326/386 (84%), Gaps = 6/386 (1%)
Frame = +3
Query: 366 SEPLEPN--RARMGVESYLPCPLLSSYHCXXXXXXXXXXXXXXXXXXXXXXXXXLREGFG 539
SEPLEP RARMGVESYLPCPLL SYHC LR+GFG
Sbjct: 22 SEPLEPEPGRARMGVESYLPCPLLPSYHCPGVPSEASAGSGTPRATATSTTASPLRDGFG 81
Query: 540 GQDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWARXXX 719
GQDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAE GGDAP+PSKRPWAR
Sbjct: 82 GQDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEDGGDAPSPSKRPWARQEN 141
Query: 720 XXXXXXXXXXXXXXXXXXXX---LREEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAA 890
L EE LP+APERLALDYIVPCMRYYGICVKDSFLGAA
Sbjct: 142 QEAEREGGMSCSCSSGSGEASAGLMEEALPSAPERLALDYIVPCMRYYGICVKDSFLGAA 201
Query: 891 LGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVD 1070
LGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVD
Sbjct: 202 LGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVD 261
Query: 1071 AVIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK 1250
AVIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK
Sbjct: 262 AVIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK 321
Query: 1251 VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERA 1430
VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD+RNPHEVKPAYATRYAITVWYFDAKERA
Sbjct: 322 VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKPAYATRYAITVWYFDAKERA 381
Query: 1431 AAKDKYQLA-GQKGVQVPVSQPTTPT 1505
AAKDKYQLA GQKGVQVPVSQP TPT
Sbjct: 382 AAKDKYQLASGQKGVQVPVSQPPTPT 407
>ref|NP_542770.2| egl nine homolog 2 [Homo sapiens].
Length = 407
Score = 641 bits (1654), Expect = 0.0
Identities = 322/386 (83%), Positives = 326/386 (84%), Gaps = 6/386 (1%)
Frame = +3
Query: 366 SEPLEPN--RARMGVESYLPCPLLSSYHCXXXXXXXXXXXXXXXXXXXXXXXXXLREGFG 539
SEPLEP RARMGVESYLPCPLL SYHC LR+GFG
Sbjct: 22 SEPLEPEPGRARMGVESYLPCPLLPSYHCPGVPSEASAGSGTPRATATSTTASPLRDGFG 81
Query: 540 GQDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWARXXX 719
GQDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAE GGDAP+PSKRPWAR
Sbjct: 82 GQDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEDGGDAPSPSKRPWARQEN 141
Query: 720 XXXXXXXXXXXXXXXXXXXX---LREEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAA 890
L EE LP+APERLALDYIVPCMRYYGICVKDSFLGAA
Sbjct: 142 QEAEREGGMSCSCSSGSGEASAGLMEEALPSAPERLALDYIVPCMRYYGICVKDSFLGAA 201
Query: 891 LGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVD 1070
LGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVD
Sbjct: 202 LGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVD 261
Query: 1071 AVIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK 1250
AVIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK
Sbjct: 262 AVIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVK 321
Query: 1251 VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERA 1430
VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD+RNPHEVKPAYATRYAITVWYFDAKERA
Sbjct: 322 VHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKPAYATRYAITVWYFDAKERA 381
Query: 1431 AAKDKYQLA-GQKGVQVPVSQPTTPT 1505
AAKDKYQLA GQKGVQVPVSQP TPT
Sbjct: 382 AAKDKYQLASGQKGVQVPVSQPPTPT 407
>ref|NP_071334.1| egl nine homolog 1 [Homo sapiens].
Length = 426
Score = 332 bits (850), Expect = 1e-90
Identities = 155/233 (66%), Positives = 187/233 (80%)
Frame = +3
Query: 798 PAAPERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAI 977
P +LAL+YIVPCM +GICV D FLG G ++ EV AL G+ DGQLVSQ++
Sbjct: 187 PLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSD 246
Query: 978 PPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGN 1157
+ IRGD+I W+EG EPGC +IG LM+ +D +IRHC G+LGSY INGRTKAMVACYPGN
Sbjct: 247 SSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYPGN 306
Query: 1158 GLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIF 1337
G GYVRHVDNP+GDGRC+TCIYYLN++WD KV GG+L+IFPEG+ A+IEP FDRLL F
Sbjct: 307 GTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF 366
Query: 1338 WSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLAGQKGVQVPVSQPT 1496
WSD+RNPHEV+PAYATRYAITVWYFDA ERA AK KY L G+KGV+V +++P+
Sbjct: 367 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKY-LTGEKGVRVELNKPS 418
>ref|NP_071356.1| egl nine homolog 3 [Homo sapiens].
Length = 239
Score = 297 bits (761), Expect = 2e-80
Identities = 132/215 (61%), Positives = 169/215 (78%), Gaps = 1/215 (0%)
Frame = +3
Query: 810 ERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRA-IPPR 986
E++AL+YIVPC+ G C D+FLG +G VL V+ L G LRDGQL RA + R
Sbjct: 12 EKIALEYIVPCLHEVGFCYLDNFLGEVVGDCVLERVKQLHCTGALRDGQLAGPRAGVSKR 71
Query: 987 SIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGNGLG 1166
+RGDQI W+ G+E GC +I L++ +D ++ +C RLG Y + R+KAMVACYPGNG G
Sbjct: 72 HLRGDQITWIGGNEEGCEAISFLLSLIDRLVLYCGSRLGKYYVKERSKAMVACYPGNGTG 131
Query: 1167 YVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD 1346
YVRHVDNP+GDGRCITCIYYLN+NWD K+HGG+L+IFPEG+ +A++EP+FDRLL FWSD
Sbjct: 132 YVRHVDNPNGDGRCITCIYYLNKNWDAKLHGGILRIFPEGKSFIADVEPIFDRLLFFWSD 191
Query: 1347 QRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQ 1451
+RNPHEV+P+YATRYA+TVWYFDA+ERA AK K++
Sbjct: 192 RRNPHEVQPSYATRYAMTVWYFDAEERAEAKKKFR 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 91,168,921
Number of extensions: 2899735
Number of successful extensions: 13825
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 13715
Number of HSP's successfully gapped: 4
Length of query: 706
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 596
Effective length of database: 14,671,124
Effective search space: 8743989904
Effective search space used: 8743989904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0126_D09
(2119 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444438.2| egl nine homolog 2 [Mus musculus]. 616 e-176
Alignment gi|NP_444437.2| egl nine homolog 1 [Mus musculus]. 329 6e-90
Alignment gi|NP_082409.2| egl nine homolog 3 [Mus musculus]. 295 7e-80
>ref|NP_444438.2| egl nine homolog 2 [Mus musculus].
Length = 419
Score = 616 bits (1588), Expect = e-176
Identities = 314/399 (78%), Positives = 323/399 (80%), Gaps = 18/399 (4%)
Frame = +3
Query: 363 VSEPLEPNRARMGVESYLPCPLLSSYHCXXXXXXXXXXXXXXXXXXXXXXXXX--LREGF 536
VSE LE +RARMGVESYLPCPLL +YH LREGF
Sbjct: 21 VSESLESSRARMGVESYLPCPLLPAYHRPGASGEASAGNGTPRTTATATTTTASPLREGF 80
Query: 537 GGQDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWARXX 716
GGQDGGEL PLQSEGAAALVTK CQRLAAQGARPEAPKRKWA+ GGDAP+PSKRPWAR
Sbjct: 81 GGQDGGELWPLQSEGAAALVTKECQRLAAQGARPEAPKRKWAKDGGDAPSPSKRPWARQE 140
Query: 717 XXXXXXXXXXXXXXXXXXXXX---------------LREEVLPAAPERLALDYIVPCMRY 851
LREEV P+APERLALDYIVPCMRY
Sbjct: 141 NQEAKGESGMGCDSGASNSSSSSSNTTSSSGEASARLREEVQPSAPERLALDYIVPCMRY 200
Query: 852 YGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEP 1031
YGICVKD+FLGA LGGRVLAEVEALK GGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEP
Sbjct: 201 YGICVKDNFLGAVLGGRVLAEVEALKWGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEP 260
Query: 1032 GCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCI 1211
GCRSIGALMAHVDAVIRHCAGRLG+YVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCI
Sbjct: 261 GCRSIGALMAHVDAVIRHCAGRLGNYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCI 320
Query: 1212 TCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDQRNPHEVKPAYATRY 1391
TCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD+RNPHEVKPAYATRY
Sbjct: 321 TCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKPAYATRY 380
Query: 1392 AITVWYFDAKERAAAKDKYQLA-GQKGVQVPVSQPTTPT 1505
AITVWYFDAKERAAA+DKYQLA GQKGVQVPVSQPTTPT
Sbjct: 381 AITVWYFDAKERAAARDKYQLASGQKGVQVPVSQPTTPT 419
>ref|NP_444437.2| egl nine homolog 1 [Mus musculus].
Length = 400
Score = 329 bits (843), Expect = 6e-90
Identities = 154/227 (67%), Positives = 183/227 (80%)
Frame = +3
Query: 798 PAAPERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRAI 977
P +LAL+YIVPCM +GICV D FLG G ++ EV AL G+ DGQLVSQ++
Sbjct: 164 PLPALKLALEYIVPCMNKHGICVVDDFLGRETGQQIGDEVRALHDTGKFTDGQLVSQKSD 223
Query: 978 PPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGN 1157
+ IRGDQI W+EG EPGC +IG LM+ +D +IRHC+G+LG+Y INGRTKAMVACYPGN
Sbjct: 224 SSKDIRGDQITWIEGKEPGCETIGLLMSSMDDLIRHCSGKLGNYRINGRTKAMVACYPGN 283
Query: 1158 GLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIF 1337
G GYVRHVDNP+GDGRC+TCIYYLN++WD KV GG+L+IFPEG+ A+IEP FDRLL F
Sbjct: 284 GTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF 343
Query: 1338 WSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLAGQKGVQV 1478
WSD+RNPHEV+PAYATRYAITVWYFDA ERA AK KY L G+KGV+V
Sbjct: 344 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKY-LTGEKGVRV 389
>ref|NP_082409.2| egl nine homolog 3 [Mus musculus].
Length = 239
Score = 295 bits (756), Expect = 7e-80
Identities = 132/215 (61%), Positives = 168/215 (78%), Gaps = 1/215 (0%)
Frame = +3
Query: 810 ERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRA-IPPR 986
E++AL+YIVPC+ G C D+FLG +G VL V+ L G LRDGQL A + R
Sbjct: 12 EKIALEYIVPCLHEVGFCYLDNFLGEVVGDCVLERVKQLHYNGALRDGQLAGPCAGVSKR 71
Query: 987 SIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGNGLG 1166
+RGDQI W+ G+E GC +I L++ +D ++ +C RLG Y + R+KAMVACYPGNG G
Sbjct: 72 HLRGDQITWIGGNEEGCEAINFLLSLIDRLVLYCGSRLGKYYVKERSKAMVACYPGNGTG 131
Query: 1167 YVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD 1346
YVRHVDNP+GDGRCITCIYYLN+NWD K+HGG+L+IFPEG+ VA++EP+FDRLL FWSD
Sbjct: 132 YVRHVDNPNGDGRCITCIYYLNKNWDAKLHGGVLRIFPEGKSFVADVEPIFDRLLFFWSD 191
Query: 1347 QRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQ 1451
+RNPHEV+P+YATRYA+TVWYFDA+ERA AK K++
Sbjct: 192 RRNPHEVQPSYATRYAMTVWYFDAEERAEAKKKFR 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 76,233,794
Number of extensions: 2366391
Number of successful extensions: 10439
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10346
Number of HSP's successfully gapped: 5
Length of query: 706
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 598
Effective length of database: 12,373,671
Effective search space: 7399455258
Effective search space used: 7399455258
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0126_D09
(2119 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127193.1| PREDICTED: egl nine homolog 2 [Sus scrofa]. 670 0.0
Alignment gi|XP_001928542.3| PREDICTED: egl nine homolog 3-like [Sus scro... 296 2e-80
Alignment gi|XP_003133073.2| PREDICTED: hypothetical protein LOC100153461... 202 6e-52
>ref|XP_003127193.1| PREDICTED: egl nine homolog 2 [Sus scrofa].
Length = 402
Score = 670 bits (1728), Expect = 0.0
Identities = 332/382 (86%), Positives = 333/382 (87%), Gaps = 1/382 (0%)
Frame = +3
Query: 363 VSEPLEPNRARMGVESYLPCPLLSSYHCXXXXXXXXXXXXXXXXXXXXXXXXXLREGFGG 542
VSEPLEPNRARMGVESYLPCPLLSSYHC LREGFGG
Sbjct: 21 VSEPLEPNRARMGVESYLPCPLLSSYHCPGAPGEASAGSGTPRATATSTTASPLREGFGG 80
Query: 543 QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWARXXXX 722
QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWAR
Sbjct: 81 QDGGELRPLQSEGAAALVTKGCQRLAAQGARPEAPKRKWAEGGGDAPAPSKRPWARQENQ 140
Query: 723 XXXXXXXXXXXXXXXXXXXLREEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAALGGR 902
LREEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAALGGR
Sbjct: 141 EAEAEGEGCSSGSGEPSAGLREEVLPAAPERLALDYIVPCMRYYGICVKDSFLGAALGGR 200
Query: 903 VLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIR 1082
VLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIR
Sbjct: 201 VLAEVEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIR 260
Query: 1083 HCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGG 1262
HCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGG
Sbjct: 261 HCAGRLGSYVINGRTKAMVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGG 320
Query: 1263 LLQIFPEGRPVVANIEPLFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKD 1442
LLQIFPEGRPVVANIEPLFDRLLIFWSD+RNPHEVKPAYATRYAITVWYFDAKERAAAKD
Sbjct: 321 LLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKPAYATRYAITVWYFDAKERAAAKD 380
Query: 1443 KYQL-AGQKGVQVPVSQPTTPT 1505
KYQL AGQKGVQVPVSQPTTPT
Sbjct: 381 KYQLAAGQKGVQVPVSQPTTPT 402
>ref|XP_001928542.3| PREDICTED: egl nine homolog 3-like [Sus scrofa].
Length = 239
Score = 296 bits (759), Expect = 2e-80
Identities = 132/215 (61%), Positives = 169/215 (78%), Gaps = 1/215 (0%)
Frame = +3
Query: 810 ERLALDYIVPCMRYYGICVKDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQRA-IPPR 986
E++AL+YIVPC+ G C D+FLG +G VL V+ L G LRDGQL RA + R
Sbjct: 12 EKIALEYIVPCLHEVGFCYLDNFLGEVVGDCVLERVKQLHCTGALRDGQLAGPRAGVSKR 71
Query: 987 SIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYVINGRTKAMVACYPGNGLG 1166
+RGDQI W+ G+E GC +I L++ +D ++ +C RLG Y + R+KAMVACYPGNG G
Sbjct: 72 HLRGDQITWIGGNEEGCEAISFLLSLLDRLVLYCGSRLGKYYVKERSKAMVACYPGNGTG 131
Query: 1167 YVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSD 1346
YVRHVDNP+GDGRCITCIYYLN+NWD K+HGG+L+IFPEG+ +A++EP+FDRLL FWSD
Sbjct: 132 YVRHVDNPNGDGRCITCIYYLNKNWDAKLHGGILRIFPEGKSFIADVEPIFDRLLFFWSD 191
Query: 1347 QRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQ 1451
+RNPHEV+P+YATRYA+TVWYFDA+ERA AK K++
Sbjct: 192 RRNPHEVQPSYATRYAMTVWYFDAEERAEAKKKFR 226
>ref|XP_003133073.2| PREDICTED: hypothetical protein LOC100153461 [Sus scrofa].
Length = 128
Score = 202 bits (514), Expect = 6e-52
Identities = 91/121 (75%), Positives = 107/121 (88%)
Frame = +3
Query: 1134 MVACYPGNGLGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEP 1313
MVACYPGNG GYVRHVDNP+GDGRC+TCIYYLN++WD KV GG+L+IFPEG+ A+IEP
Sbjct: 1 MVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEP 60
Query: 1314 LFDRLLIFWSDQRNPHEVKPAYATRYAITVWYFDAKERAAAKDKYQLAGQKGVQVPVSQP 1493
FDRLL FWSD+RNPHEV+PAYATRYAITVWYFDA ERA AK KY L G+KGV+V +++P
Sbjct: 61 KFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKY-LTGEKGVRVELNKP 119
Query: 1494 T 1496
+
Sbjct: 120 S 120
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,346,405
Number of extensions: 1924212
Number of successful extensions: 9387
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9275
Number of HSP's successfully gapped: 3
Length of query: 706
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 600
Effective length of database: 8,704,850
Effective search space: 5222910000
Effective search space used: 5222910000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= THY01_0126_D09
(2119 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1961 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1961 bits (989), Expect = 0.0
Identities = 1041/1066 (97%)
Strand = Plus / Plus
Query: 66 gccatcgtgacagttctcttcccaagcccctagggacatcagaggatttggggaccagcg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44686886 gccatcgtgacagttctcttcccaagcccctagggacatcagaggatttggggaccagcg 44686945
Query: 126 agcacccccagggcacgagaaaagtttctgtcacctgccctgcctcatcctgccccacgc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44686946 agcacccccagggcacgagaaaagtttctgtcacctgccctgcctcatcctgccccacgc 44687005
Query: 186 caggcccagctgccctggcccccggctgcatcaagtnnnnnnnnnnnnnnnnnnnnnnng 245
|||||||||||||||||||||||||||||||||||| |
Sbjct: 44687006 caggcccagctgccctggcccccggctgcatcaagtggaggaggaggaggtggaggaggg 44687065
Query: 246 tggcaccatgggcctgggccgtgccctccatgcccgggggatgaagacactgctgccatg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687066 tggcaccatgggcctgggccgtgccctccatgcccgggggatgaagacactgctgccatg 44687125
Query: 306 gacagcccgtgccagccgcagcccctgagtcaggctctccctcagttgcctggttccgtg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687126 gacagcccgtgccagccgcagcccctgagtcaggctctccctcagttgcctggttccgtg 44687185
Query: 366 tcagaaccgttggagcctaaccgggccaggatgggggtggagagttacctgccctgtccc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687186 tcagaaccgttggagcctaaccgggccaggatgggggtggagagttacctgccctgtccc 44687245
Query: 426 ctgctgtcctcctaccactgtccaggagcgcctggtgaggcctcggcgggaagtgggacc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687246 ctgctgtcctcctaccactgtccaggagcgcctggtgaggcctcggcgggaagtgggacc 44687305
Query: 486 cccagagccacagctacttccaccacagccagccccctgcgggagggcttcggtgggcag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687306 cccagagccacagctacttccaccacagccagccccctgcgggagggcttcggtgggcag 44687365
Query: 546 gatggcggcgagctgcggccgctgcagagtgagggtgctgcggcactggtcaccaagggg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687366 gatggcggcgagctgcggccgctgcagagtgagggtgctgcggcactggtcaccaagggg 44687425
Query: 606 tgccagcggctggcagcccagggcgcccggcccgaggcccccaaacggaaatgggcagag 665
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 44687426 tgccagcggctggcagcccagggcgcccggcctgaggcccccaaacggaaatgggcagag 44687485
Query: 666 ggtggtggggatgcccccgcacccagcaaacggccctgggccaggcaggagaaccaggag 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687486 ggtggtggggatgcccccgcacccagcaaacggccctgggccaggcaggagaaccaggag 44687545
Query: 726 gctgaggccgagggggagggctgcagcagtggcagtggtgagcccagtgctgggctgagg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687546 gctgaggccgagggggagggctgcagcagtggcagtggtgagcccagtgctgggctgagg 44687605
Query: 786 gaggaggtgctgcccgctgcaccggagcgcctggccctggactatattgtgccctgcatg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687606 gaggaggtgctgcccgctgcaccggagcgcctggccctggactatattgtgccctgcatg 44687665
Query: 846 cggtactatggcatctgcgtcaaggacagtttcctgggggcggcactaggtggccgtgtg 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687666 cggtactatggcatctgcgtcaaggacagtttcctgggggcggcactaggtggccgtgtg 44687725
Query: 906 ctggccgaggtggaggccctgaagcggggcgggcgcctgcgtgacgggcagctagtgagc 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687726 ctggccgaggtggaggccctgaagcggggcgggcgcctgcgtgacgggcagctagtgagc 44687785
Query: 966 cagcgggctatcccgccacgcagcatccgtggggaccagattgcctgggtggaaggccat 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687786 cagcgggctatcccgccacgcagcatccgtggggaccagattgcctgggtggaaggccat 44687845
Query: 1026 gagcccggctgccgaagcattggtgcccttatggcccacgtggatgctgtaatccgccac 1085
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 44687846 gagcccggctgccgaagcattggtgctcttatggcccacgtggatgctgtaatccgccac 44687905
Query: 1086 tgtgctgggaggctgggcagctacgtcatcaacgggcgcaccaagg 1131
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44687906 tgtgctgggaggctgggcagctacgtcatcaacgggcgcaccaagg 44687951
Score = 1267 bits (639), Expect = 0.0
Identities = 642/643 (99%)
Strand = Plus / Plus
Query: 1454 agcaggacagaaaggtgtccaagtaccagtatcgcagccaactacgcccacctagtggcc 1513
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 44694225 agcaggacagaaaggtgtccaagtacctgtatcgcagccaactacgcccacctagtggcc 44694284
Query: 1514 agccccagagctgcatggacagccggcttgccctgacttcagagagccctgggccctggt 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694285 agccccagagctgcatggacagccggcttgccctgacttcagagagccctgggccctggt 44694344
Query: 1574 gctgccaggccagcagcccaccagtctcagtgcctgctccttccccgccaccgcctctgc 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694345 gctgccaggccagcagcccaccagtctcagtgcctgctccttccccgccaccgcctctgc 44694404
Query: 1634 ttctgactttgcctctgtcctgcctggtgtggagggctccgtccaacgctgaggaccaag 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694405 ttctgactttgcctctgtcctgcctggtgtggagggctccgtccaacgctgaggaccaag 44694464
Query: 1694 gaggaggagagacctctcctgccctgggatggggactggggttgtgacccgggcagaggc 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694465 gaggaggagagacctctcctgccctgggatggggactggggttgtgacccgggcagaggc 44694524
Query: 1754 cagtgctgggggctgccgttactggagctgggcccctgtgtcctgccctgtttggtcatt 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694525 cagtgctgggggctgccgttactggagctgggcccctgtgtcctgccctgtttggtcatt 44694584
Query: 1814 ccccctctcaggtttggagagctggaaggaggcactgccacctcccaccaggatgcagga 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694585 ccccctctcaggtttggagagctggaaggaggcactgccacctcccaccaggatgcagga 44694644
Query: 1874 tttgaggttggggtgagtcatggcctcttgctggcaaaggtttatggggggagtatcccc 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694645 tttgaggttggggtgagtcatggcctcttgctggcaaaggtttatggggggagtatcccc 44694704
Query: 1934 aagccccctactcctccagcctggaatgtgaagtgactccccaacccctttggccatggc 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694705 aagccccctactcctccagcctggaatgtgaagtgactccccaacccctttggccatggc 44694764
Query: 1994 accttttggactaggctgccactgcttgggcaggatgaaaggtgctgggaggagcatggg 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694765 accttttggactaggctgccactgcttgggcaggatgaaaggtgctgggaggagcatggg 44694824
Query: 2054 cgtgaaagttgtcagccaagaaataaaagtttacctcagctgc 2096
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44694825 cgtgaaagttgtcagccaagaaataaaagtttacctcagctgc 44694867
Score = 274 bits (138), Expect = 2e-70
Identities = 141/142 (99%)
Strand = Plus / Plus
Query: 1249 aggtgcatggcggcctgctgcagatattcccagagggccggcctgtggtagccaacatcg 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44693573 aggtgcatggcggcctgctgcagatattcccagagggccggcctgtggtagccaacatcg 44693632
Query: 1309 agccactctttgaccggctgctcattttctggtctgatcagcggaacccccatgaggtga 1368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 44693633 agccactctttgaccggctgctcattttctggtctgatcggcggaacccccatgaggtga 44693692
Query: 1369 aaccagcctatgccaccaggta 1390
||||||||||||||||||||||
Sbjct: 44693693 aaccagcctatgccaccaggta 44693714
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1129 aggccatggtggcatgttacccaggcaacgggctggggtacgtgagacacgttgacaatc 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44693006 aggccatggtggcatgttacccaggcaacgggctggggtacgtgagacacgttgacaatc 44693065
Query: 1189 cccacggcgatgggcgctgcatcacctgtatctattacctgaatcagaactgggacgtca 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44693066 cccacggcgatgggcgctgcatcacctgtatctattacctgaatcagaactgggacgtca 44693125
Query: 1249 aggt 1252
||||
Sbjct: 44693126 aggt 44693129
Score = 143 bits (72), Expect = 5e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1384 ccaggtatgccatcactgtctggtattttgacgccaaggagagagcagcagccaaagaca 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44693912 ccaggtatgccatcactgtctggtattttgacgccaaggagagagcagcagccaaagaca 44693971
Query: 1444 agtatcagctag 1455
||||||||||||
Sbjct: 44693972 agtatcagctag 44693983
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tggcgcgctgtgcggcgcagggcggctggcacaaacggcggcgccggggccggaggaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44685812 tggcgcgctgtgcggcgcagggcggctggcacaaacggcggcgccggggccggaggaaaa 44685871
Query: 61 agctgg 66
||||||
Sbjct: 44685872 agctgg 44685877
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,714,023
Number of extensions: 516
Number of successful extensions: 516
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 7
Length of query: 2119
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2097
Effective length of database: 2,808,408,574
Effective search space: 5889232779678
Effective search space used: 5889232779678
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)