Animal-Genome cDNA UTR01_0056_G10


Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= UTR01_0056_G10
         (1068 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001824.1| clathrin light chain A isoform a [Homo sapiens].     368   e-102
Alignment   gi|NP_001171689.1| clathrin light chain A isoform d [Homo sapie...   357   8e-99
Alignment   gi|NP_001070145.1| clathrin light chain A isoform c [Homo sapie...   357   1e-98
Alignment   gi|NP_009027.1| clathrin light chain A isoform b [Homo sapiens].     352   3e-97
Alignment   gi|NP_001171690.1| clathrin light chain A isoform e [Homo sapie...   258   7e-69
Alignment   gi|NP_001825.1| clathrin light chain B isoform a [Homo sapiens].     241   8e-64
Alignment   gi|NP_009028.1| clathrin light chain B isoform b [Homo sapiens].     230   2e-60
Alignment   gi|NP_001171691.1| clathrin light chain A isoform f [Homo sapie...   225   5e-59

>ref|NP_001824.1| clathrin light chain A isoform a [Homo sapiens].
          Length = 218

 Score =  368 bits (944), Expect = e-102
 Identities = 192/218 (88%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 655
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180

Query: 656 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218


>ref|NP_001171689.1| clathrin light chain A isoform d [Homo sapiens].
          Length = 230

 Score =  357 bits (917), Expect = 8e-99
 Identities = 191/230 (83%), Positives = 195/230 (84%), Gaps = 18/230 (7%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 619
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN            +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180

Query: 620 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230


>ref|NP_001070145.1| clathrin light chain A isoform c [Homo sapiens].
          Length = 236

 Score =  357 bits (915), Expect = 1e-98
 Identities = 192/236 (81%), Positives = 195/236 (82%), Gaps = 24/236 (10%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 601
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                  
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180

Query: 602 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236


>ref|NP_009027.1| clathrin light chain A isoform b [Homo sapiens].
          Length = 248

 Score =  352 bits (903), Expect = 3e-97
 Identities = 192/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 601
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                  
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180

Query: 602 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 745
                       AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240

Query: 746 LKQAPLVH 769
           LKQAPLVH
Sbjct: 241 LKQAPLVH 248


>ref|NP_001171690.1| clathrin light chain A isoform e [Homo sapiens].
          Length = 168

 Score =  258 bits (659), Expect = 7e-69
 Identities = 136/161 (84%), Positives = 138/161 (85%), Gaps = 6/161 (3%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 598
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 161


>ref|NP_001825.1| clathrin light chain B isoform a [Homo sapiens].
          Length = 211

 Score =  241 bits (615), Expect = 8e-64
 Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 322
           D FG  +    G   A EEDPAAAFLAQQESEIAGIENDE F A                
Sbjct: 3   DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62

Query: 323 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 502
              + +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63  AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122

Query: 503 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 682
             E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182

Query: 683 FNPKSSKQAKDVSRMRSVLISLKQAPL 763
           FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209


>ref|NP_009028.1| clathrin light chain B isoform b [Homo sapiens].
          Length = 229

 Score =  230 bits (586), Expect = 2e-60
 Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 322
           D FG  +    G   A EEDPAAAFLAQQESEIAGIENDE F A                
Sbjct: 3   DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62

Query: 323 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 502
              + +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63  AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122

Query: 503 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 628
             E EW+EKA K+LEEW  RQ EQ++K K NNR                  A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182

Query: 629 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 763
            +E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227


>ref|NP_001171691.1| clathrin light chain A isoform f [Homo sapiens].
          Length = 166

 Score =  225 bits (574), Expect = 5e-59
 Identities = 135/218 (61%), Positives = 142/218 (65%), Gaps = 6/218 (2%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIA                
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIA---------------- 44

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                           G+ N E +   +G            +   EP             
Sbjct: 45  ----------------GIENDEAFAILDGGAPG-------PQPHGEPPG----------- 70

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 655
               DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 71  --GPDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 128

Query: 656 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 166


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,642,027
Number of extensions: 713492
Number of successful extensions: 3635
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3533
Number of HSP's successfully gapped: 9
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= UTR01_0056_G10
         (1068 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776447.1| clathrin light chain A [Bos taurus].                 355   3e-98
Alignment   gi|NP_776702.1| clathrin light chain B [Bos taurus].                 245   6e-65

>ref|NP_776447.1| clathrin light chain A [Bos taurus].
          Length = 243

 Score =  355 bits (912), Expect = 3e-98
 Identities = 190/243 (78%), Positives = 194/243 (79%), Gaps = 31/243 (12%)
 Frame = +2

Query: 134 MADLDPFGAPAG-PSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXX 310
           MA+LDPFG PAG P+LGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD         
Sbjct: 1   MAELDPFGVPAGGPALGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGSQPH 60

Query: 311 XXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 490
                  DAVDGV NG+YYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD
Sbjct: 61  GEPPGIPDAVDGVTNGDYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 120

Query: 491 ANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR----------------------- 601
           ANSRKQEAEWKEKAIKEL+EWYARQDEQLQKTKANNR                       
Sbjct: 121 ANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINH 180

Query: 602 -------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 760
                  AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP
Sbjct: 181 PCYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 240

Query: 761 LVH 769
           LVH
Sbjct: 241 LVH 243


>ref|NP_776702.1| clathrin light chain B [Bos taurus].
          Length = 210

 Score =  245 bits (625), Expect = 6e-65
 Identities = 124/206 (60%), Positives = 147/206 (71%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 325
           D FG  +    G   A EEDPAAAFLAQQESEIAGIENDE F                  
Sbjct: 3   DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASG 62

Query: 326 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 505
             + +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+ 
Sbjct: 63  ASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 122

Query: 506 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 685
            E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 123 MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 182

Query: 686 NPKSSKQAKDVSRMRSVLISLKQAPL 763
           NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 NPKSSKQCKDVSRLRSVLMSLKQTPL 208


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,984,789
Number of extensions: 723606
Number of successful extensions: 3353
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3324
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= UTR01_0056_G10
         (1068 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_866787.1| PREDICTED: similar to clathrin, light polypepti...   370   e-102
Alignment   gi|XP_866825.1| PREDICTED: similar to Clathrin light chain A (L...   360   2e-99
Alignment   gi|XP_866761.1| PREDICTED: similar to Clathrin light chain A (L...   359   3e-99
Alignment   gi|XP_531996.2| PREDICTED: similar to Clathrin light chain A (L...   354   7e-98
Alignment   gi|XP_866835.1| PREDICTED: similar to clathrin, light polypepti...   265   4e-71
Alignment   gi|XP_866066.1| PREDICTED: similar to clathrin, light polypepti...   242   4e-64
Alignment   gi|XP_866115.1| PREDICTED: similar to clathrin, light polypepti...   241   9e-64
Alignment   gi|XP_866083.1| PREDICTED: similar to clathrin, light polypepti...   239   2e-63
Alignment   gi|XP_866050.1| PREDICTED: similar to clathrin, light polypepti...   239   2e-63
Alignment   gi|XP_866801.1| PREDICTED: similar to Clathrin light chain A (L...   236   4e-62

>ref|XP_866787.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
           isoform 3 [Canis familiaris].
          Length = 218

 Score =  370 bits (950), Expect = e-102
 Identities = 193/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
 Frame = +2

Query: 134 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPA    GP+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 655
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180

Query: 656 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218


>ref|XP_866825.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 6 [Canis
           familiaris].
          Length = 230

 Score =  360 bits (923), Expect = 2e-99
 Identities = 192/230 (83%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
 Frame = +2

Query: 134 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPA    GP+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 619
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN            +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180

Query: 620 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230


>ref|XP_866761.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 2 [Canis
           familiaris].
          Length = 236

 Score =  359 bits (921), Expect = 3e-99
 Identities = 193/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
 Frame = +2

Query: 134 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPA    GP+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 601
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                  
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180

Query: 602 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236


>ref|XP_531996.2| PREDICTED: similar to Clathrin light chain A (Lca) isoform 1 [Canis
           familiaris].
          Length = 248

 Score =  354 bits (909), Expect = 7e-98
 Identities = 193/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
 Frame = +2

Query: 134 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPA    GP+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 601
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                  
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180

Query: 602 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 745
                       AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240

Query: 746 LKQAPLVH 769
           LKQAPLVH
Sbjct: 241 LKQAPLVH 248


>ref|XP_866835.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
           isoform 7 [Canis familiaris].
          Length = 139

 Score =  265 bits (678), Expect = 4e-71
 Identities = 132/134 (98%), Positives = 134/134 (100%)
 Frame = +2

Query: 368 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 547
           +ESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE
Sbjct: 6   RESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 65

Query: 548 EWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRM 727
           EWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRM
Sbjct: 66  EWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRM 125

Query: 728 RSVLISLKQAPLVH 769
           RSVLISLKQAPLVH
Sbjct: 126 RSVLISLKQAPLVH 139


>ref|XP_866066.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
           3 [Canis familiaris].
          Length = 207

 Score =  242 bits (618), Expect = 4e-64
 Identities = 124/206 (60%), Positives = 149/206 (72%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 325
           D FG  +    G   A EEDPAAAFLAQQESEIAGIENDE F + +              
Sbjct: 3   DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGLSNGYCHVFVLSLAGS- 61

Query: 326 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 505
             + +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+ 
Sbjct: 62  --EDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 119

Query: 506 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 685
            E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 120 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 179

Query: 686 NPKSSKQAKDVSRMRSVLISLKQAPL 763
           NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 180 NPKSSKQCKDVSRLRSVLMSLKQTPL 205


>ref|XP_866115.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
           5 [Canis familiaris].
          Length = 211

 Score =  241 bits (615), Expect = 9e-64
 Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 322
           D FG  +    G   A EEDPAAAFLAQQESEIAGIENDE F A                
Sbjct: 3   DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAQPGPAGG 62

Query: 323 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 502
              + +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63  AGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122

Query: 503 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 682
             E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182

Query: 683 FNPKSSKQAKDVSRMRSVLISLKQAPL 763
           FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209


>ref|XP_866083.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
           4 [Canis familiaris].
          Length = 213

 Score =  239 bits (611), Expect = 2e-63
 Identities = 125/209 (59%), Positives = 148/209 (70%), Gaps = 3/209 (1%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF---AILDXXXXXXXXXXX 316
           D FG  +    G   A EEDPAAAFLAQQESEIAGIENDE F   A              
Sbjct: 3   DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAHASACPP 62

Query: 317 XXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDAN 496
                + +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA 
Sbjct: 63  STAGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA 122

Query: 497 SRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARL 676
           S+  E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+L
Sbjct: 123 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL 182

Query: 677 CDFNPKSSKQAKDVSRMRSVLISLKQAPL 763
           CDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 CDFNPKSSKQCKDVSRLRSVLMSLKQTPL 211


>ref|XP_866050.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
           2 [Canis familiaris].
          Length = 208

 Score =  239 bits (611), Expect = 2e-63
 Identities = 124/206 (60%), Positives = 146/206 (70%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 325
           D FG  +    G   A EEDPAAAFLAQQESEIAGIENDE F                  
Sbjct: 3   DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGA--PAGNSGEEEGPRYG 60

Query: 326 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 505
               +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+ 
Sbjct: 61  PLGDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 120

Query: 506 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 685
            E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 121 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 180

Query: 686 NPKSSKQAKDVSRMRSVLISLKQAPL 763
           NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 181 NPKSSKQCKDVSRLRSVLMSLKQTPL 206


>ref|XP_866801.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 4 [Canis
           familiaris].
          Length = 178

 Score =  236 bits (601), Expect = 4e-62
 Identities = 144/230 (62%), Positives = 150/230 (65%), Gaps = 18/230 (7%)
 Frame = +2

Query: 134 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPA    GP+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAIL     
Sbjct: 1   MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAIL----- 55

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                          DG   G                    +   EP  +          
Sbjct: 56  ---------------DGGAPGP-------------------QPHGEPPGVP--------- 72

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 619
               DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN            +AAEEAF
Sbjct: 73  ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 128

Query: 620 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 178


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,284,212
Number of extensions: 726644
Number of successful extensions: 3730
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3645
Number of HSP's successfully gapped: 14
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= UTR01_0056_G10
         (1068 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 ...   385   e-107
Alignment   gi|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 ...   374   e-104
Alignment   gi|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 ...   374   e-104
Alignment   gi|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 ...   369   e-102
Alignment   gi|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrof...   240   1e-63
Alignment   gi|XP_003354235.1| PREDICTED: clathrin light chain B-like isofo...   238   3e-63
Alignment   gi|XP_003123718.2| PREDICTED: clathrin light chain B-like isofo...   227   7e-60

>ref|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 [Sus scrofa].
          Length = 212

 Score =  385 bits (988), Expect = e-107
 Identities = 196/212 (92%), Positives = 196/212 (92%)
 Frame = +2

Query: 134 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 313
           MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD          
Sbjct: 1   MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60

Query: 314 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 493
                 DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61  EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120

Query: 494 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 673
           NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 180

Query: 674 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 212


>ref|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 [Sus scrofa].
          Length = 224

 Score =  374 bits (961), Expect = e-104
 Identities = 195/224 (87%), Positives = 196/224 (87%), Gaps = 12/224 (5%)
 Frame = +2

Query: 134 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 313
           MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD          
Sbjct: 1   MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60

Query: 314 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 493
                 DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61  EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120

Query: 494 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAFVNDIEE 637
           NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN            +AAEEAFVNDIEE
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAFVNDIEE 180

Query: 638 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 224


>ref|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 [Sus scrofa].
          Length = 230

 Score =  374 bits (959), Expect = e-104
 Identities = 196/230 (85%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
 Frame = +2

Query: 134 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 313
           MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD          
Sbjct: 1   MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60

Query: 314 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 493
                 DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61  EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120

Query: 494 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAF 619
           NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                  AAEEAF
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAF 180

Query: 620 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230


>ref|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 [Sus scrofa].
          Length = 242

 Score =  369 bits (947), Expect = e-102
 Identities = 196/242 (80%), Positives = 196/242 (80%), Gaps = 30/242 (12%)
 Frame = +2

Query: 134 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 313
           MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD          
Sbjct: 1   MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60

Query: 314 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 493
                 DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61  EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120

Query: 494 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------------ 601
           NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                        
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHP 180

Query: 602 ------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 763
                 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL
Sbjct: 181 CYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 240

Query: 764 VH 769
           VH
Sbjct: 241 VH 242


>ref|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrofa].
          Length = 160

 Score =  240 bits (612), Expect = 1e-63
 Identities = 138/212 (65%), Positives = 142/212 (66%)
 Frame = +2

Query: 134 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 313
           MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA                      
Sbjct: 1   MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA---------------------- 38

Query: 314 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 493
                     G+ N E +   +G            +   EP                 DA
Sbjct: 39  ----------GIENDEAFAILDGGAPG-------PQPHGEPPG-------------GPDA 68

Query: 494 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 673
           NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 69  NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 128

Query: 674 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 160


>ref|XP_003354235.1| PREDICTED: clathrin light chain B-like isoform 2 [Sus scrofa].
          Length = 211

 Score =  238 bits (608), Expect = 3e-63
 Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 322
           D FG  +    G     EEDPAAAFLAQQESEIAGIENDE F A                
Sbjct: 3   DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62

Query: 323 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 502
              + +   +NG+ +Q++NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63  AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122

Query: 503 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 682
             E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182

Query: 683 FNPKSSKQAKDVSRMRSVLISLKQAPL 763
           FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209


>ref|XP_003123718.2| PREDICTED: clathrin light chain B-like isoform 1 [Sus scrofa].
          Length = 229

 Score =  227 bits (579), Expect = 7e-60
 Identities = 123/225 (54%), Positives = 147/225 (65%), Gaps = 19/225 (8%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 322
           D FG  +    G     EEDPAAAFLAQQESEIAGIENDE F A                
Sbjct: 3   DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62

Query: 323 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 502
              + +   +NG+ +Q++NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63  AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122

Query: 503 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 628
             E EW+EKA K+LEEW  RQ EQ++K K NNR                  A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182

Query: 629 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 763
            +E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,157,270
Number of extensions: 494151
Number of successful extensions: 2165
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 8
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= UTR01_0056_G10
         (1068 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001073853.1| clathrin light chain A isoform a [Mus muscul...   369   e-102
Alignment   gi|NP_001073855.1| clathrin light chain A isoform d [Mus muscul...   365   e-101
Alignment   gi|NP_058040.2| clathrin light chain A isoform c [Mus musculus].     358   5e-99
Alignment   gi|NP_001073854.1| clathrin light chain A isoform b [Mus muscul...   353   1e-97
Alignment   gi|NP_083146.1| clathrin light chain B [Mus musculus].               237   1e-62

>ref|NP_001073853.1| clathrin light chain A isoform a [Mus musculus].
          Length = 218

 Score =  369 bits (947), Expect = e-102
 Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 655
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180

Query: 656 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218


>ref|NP_001073855.1| clathrin light chain A isoform d [Mus musculus].
          Length = 216

 Score =  365 bits (936), Expect = e-101
 Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPG--DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 118

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 655
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 119 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 178

Query: 656 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 179 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 216


>ref|NP_058040.2| clathrin light chain A isoform c [Mus musculus].
          Length = 236

 Score =  358 bits (918), Expect = 5e-99
 Identities = 192/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 601
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                  
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180

Query: 602 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 769
           AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236


>ref|NP_001073854.1| clathrin light chain A isoform b [Mus musculus].
          Length = 248

 Score =  353 bits (906), Expect = 1e-97
 Identities = 192/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
 Frame = +2

Query: 134 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 295
           MA+LDPFGAPAG    P+LGNGVAG  EEDPAAAFLAQQESEIAGIENDEAFAILD    
Sbjct: 1   MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60

Query: 296 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 475
                       DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61  GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120

Query: 476 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 601
           LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR                  
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180

Query: 602 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 745
                       AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240

Query: 746 LKQAPLVH 769
           LKQAPLVH
Sbjct: 241 LKQAPLVH 248


>ref|NP_083146.1| clathrin light chain B [Mus musculus].
          Length = 211

 Score =  237 bits (605), Expect = 1e-62
 Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
 Frame = +2

Query: 146 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 322
           + FG  +    G   A EEDPAAAFLAQQESEIAGIEND  F A                
Sbjct: 3   EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62

Query: 323 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 502
              + +   +NG+ +QE+NGP D YAAI+Q DRL  EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63  AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122

Query: 503 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 682
             E EW+EKA K+LEEW  RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182

Query: 683 FNPKSSKQAKDVSRMRSVLISLKQAPL 763
           FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,808,920
Number of extensions: 598462
Number of successful extensions: 2894
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2839
Number of HSP's successfully gapped: 5
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= UTR01_0056_G10
         (1068 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         656   0.0  
Sscrofa_Chr14                                                         125   5e-26
Sscrofa_Chr17                                                         107   1e-20
Sscrofa_Chr02                                                          66   4e-08

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  656 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Plus

                                                                             
Query: 2         gcttccgtcttctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgc 61
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772784 gcttccgtcttctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgc 264772843

                                                                             
Query: 62        tgccgggcgcggttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagt 121
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772844 tgccgggcgcggttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagt 264772903

                                                                             
Query: 122       tgaacgcctgccatggctgatttagatccgttcggcgcccccgccggcccctcgctgggg 181
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772904 tgaacgcctgccatggctgatttagatccgttcggcgcccccgccggcccctcgctgggg 264772963

                                                                             
Query: 182       aacggagtggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgag 241
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772964 aacggagtggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgag 264773023

                                                                             
Query: 242       attgctggcatcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccc 301
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264773024 attgctggcatcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccc 264773083

                                                
Query: 302       cagccgcacggcgagccgccggggggtccgg 332
                 |||||||||||||||||||||||||||||||
Sbjct: 264773084 cagccgcacggcgagccgccggggggtccgg 264773114



 Score =  541 bits (273), Expect = e-151
 Identities = 344/365 (94%), Gaps = 7/365 (1%)
 Strand = Plus / Plus

                                                                             
Query: 680       gactttaaccccaagtccagcaagcaggccaaagatgtctcccgcatgcgttctgtcctc 739
                 ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 259949920 gactttaaccccaagtccagcaagcaggccaaagatgtctctcacatgtgttctgtcctc 259949979

                                                                             
Query: 740       atctccctcaagcagg-cccccctggtgcactgaagagccaccatgtggaaacactacat 798
                 | ||| |||||||||| |||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 259949980 agctctctcaagcaggtcccccctggtgcactgaagagccacgctgtggaaacactacat 259950039

                                                                             
Query: 799       ctgcaatatcttaatcctactcagtgaagctcttcacagtaattggattaattatgttga 858
                 || |||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 259950040 cttcaatatcttactcctacttagtgaagctcttcacagtaattggattaattttattga 259950099

                                                                             
Query: 859       gttcttttggaccaaacctttttgtctttagagttgatcattgtttgtgattgcatgttt 918
                 |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 259950100 gttcttttggaccaaacctttt-gcctttagagttgatcattgtttgtgattgcatgttt 259950158

                                                                             
Query: 919       ccttcaactgtgttctccctggcattcagagaggagcggaggcgcccagggaagggaggg 978
                 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 259950159 ccttcaactgtgttctccctggcattcagagaggagaggaggcgcccagggaagggaggg 259950218

                                                                             
Query: 979       aggcctcccaagggcagcctcaacctctgcttttgtgc-----attattctgagaataaa 1033
                 ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||
Sbjct: 259950219 aggcctcccaagggcagcctcaacctctgcttttgtgcataggattattctgagaataaa 259950278

                      
Query: 1034      tttct 1038
                 |||||
Sbjct: 259950279 tttct 259950283



 Score =  238 bits (120), Expect = 5e-60
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                             
Query: 369       aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 428
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783240 aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 264783299

                                                                             
Query: 429       cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 488
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783300 cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 264783359



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                         
Query: 332       gatgccgttgatggagtgatgaatggcgaatactaccagg 371
                 ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264780812 gatgccgttgatggagtgatgaatggcgaatactaccagg 264780851


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  125 bits (63), Expect = 5e-26
 Identities = 148/175 (84%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                             
Query: 786       ggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaattgga 845
                 |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| | 
Sbjct: 141192918 ggaaacactacatctgcagtatcttaatcctacttagtgacgctcttcacagtaattagg 141192859

                                                                             
Query: 846       ttaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcattgtttg 905
                 | ||| ||||||| ||||||  ||||| | || |  |||||||| | || |||  |||||
Sbjct: 141192858 tgaatcatgttgaattctttcagaccaga-ctgtccgtctttagggctggtcagagtttg 141192800

                                                                        
Query: 906       tgattgcatgtttccttcaactgtgttctccctggcattcagagaggagcggagg 960
                   ||||||||||||||| || ||||| || ||||||||||||||||||| |||||
Sbjct: 141192799 acattgcatgtttccttgaaatgtgtccttcctggcattcagagaggaggggagg 141192745



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 58/63 (92%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                             
Query: 644       ccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagcaag 703
                 |||||||| |||||| ||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 141193041 ccaggcactgagtgg-aacaggtggcccagctgtgtggctttaaccccaagtccagcaag 141192983

                    
Query: 704       cag 706
                 |||
Sbjct: 141192982 cag 141192980


>Sscrofa_Chr17 
||          Length = 69701581

 Score =  107 bits (54), Expect = 1e-20
 Identities = 113/129 (87%), Gaps = 4/129 (3%)
 Strand = Plus / Minus

                                                                            
Query: 810      taatcctactcagtgaagctcttcacagtaattggattaattatgttgagttc-ttttgg 868
                ||||||| ||||||||||  ||||||||| ||||||||||||||||||||||| ||| ||
Sbjct: 20461893 taatcctcctcagtgaagtgcttcacagtgattggattaattatgttgagttcatttcgg 20461834

                                                                            
Query: 869      accaaacctttttgtctttagagttgatcattgtttgtgattgcatgtttccttcaactg 928
                |||||||| ||||||||| |||| |||||| |||||||||| |||   ||||||||| ||
Sbjct: 20461833 accaaacc-ttttgtcttcagagctgatcactgtttgtgatggca--cttccttcaagtg 20461777

                         
Query: 929      tgttctccc 937
                | |||||||
Sbjct: 20461776 tattctccc 20461768


>Sscrofa_Chr02 
||          Length = 162569375

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                            
Query: 196      cgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcga 255
                ||||||||||||||| || |||||| |||| ||||||||||| || || || ||||| ||
Sbjct: 83066821 cgaggaggacccggcggctgccttcctggcccagcaggagagtgaaatcgcgggcataga 83066880

                                 
Query: 256      gaacgacgaggccttcg 272
                ||| ||||||| |||||
Sbjct: 83066881 gaatgacgagggcttcg 83066897



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                            
Query: 642      ccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagca 701
                ||||||| || ||||||||   |||||||| |||||||||||| |||||||||  |||||
Sbjct: 83135914 ccccaggtacagagtgggagaaggtggcccagctgtgtgacttcaaccccaagagcagca 83135973

                                                                     
Query: 702      agcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcag 754
                ||||   |||||| || |||||| |||| || || ||||| ||||| ||||||
Sbjct: 83135974 agcaatgcaaagacgtgtcccgcctgcgctcggtgctcatgtccctgaagcag 83136026


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,802,014
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 10
Length of query: 1068
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1047
Effective length of database: 2,808,413,156
Effective search space: 2940408574332
Effective search space used: 2940408574332
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)