>20030531C-000079 (20030531C-000079) 20030531C-000079 CTGCTCCCCT AAAGGCAGCT TTGACTGCGT GGGGGTATTT CCAGCTTTGT GGCTTTCACT TCCACTTCTC CCAGGTGGGC GGAGTGGCCT CCTGTGGACG AATCAGATTG CTCCTCCGCC CCAACTTCAG GAGGCGAGCC CGGGGCTTGG GGTCCCAGAC GTGCCGCCGC CGCCGCCACA GCAGCATCCG CAGCAGCAGC AGCAGCAGGA CGACTAGGAA AGACCCCAGG CCAGAACCAT GGAGGACCAG CGCGACCTCA TCTCCAACCA TGAGCAGCTG CCCATGCTGG GCCAGCGCCC CGGGGCCCCC GAGAGCAAGT GCAGCCGTGG AGCTCTGTAC ACAGGCTTTT CTGTCCTGGT GGCTCTGCTC CTGGCTGGCC AGGCCACCAC CGCCTACTTC CTGTACCAGC AGCAGGGCCG GCTGGACAAG CTGACGGTCA CCTCTCAGAA CTTGCAGCTG GAGAGCCTGC GGATGAAGCT TCCCAAGCCC TCCAAGCCTT TGAGCAAGAT GCGGGTTTCC GCCCCCATGC TGATGCAGGC CCTGCCCATG GAAGGCCCGG AGCCTATGCG CAACGCCACC AAGTACGGCA ACATGACCCA GGACCACGTG ATGCACCTGC TCCTGAAGTC TGACCCCCTG GGAGTGTACC CGAAGCTGAA GGGGAGCCTC CCAGAAAACC TGAAGCACCT CAAGAACACC ATGGACGGTG TGAACTGGAA GCTCTTTGAG AACTGGCTGC GTCAGTGGCT CTTGTTTGAA ATGAGCAAGA ACTCGCTGGA GGAGACACCC TTTGAGGTTC CGCCAAAAGA CCCACTGGAG ACGGAGGACC TGTCGTCCGG GCTGGGCGTG ACCAAGCAGG ATCTCGGCCA AGTCATCCTG TAAGAGCAGC AGACGCCAGC CCCCAGCCCT GCGTGGCCAC AGCTTGCCTG CCCCCCACCC TCCCTGCCGC CCCCACCTGC ACCTCATCCC ATGGGCCTCT GGCACCTGGC TCGCCGTCCT CCCTGGACAC CTCACGTCTC TTCAGAAGGC CAAGGATGAA CGACACAGGG AGGCCCTGCT GCCCACAGCT CCATCCGCTA GCAGGGACAC AGGGCCCCCG GGGACAGCCC GTGAGCGGGG CTGGTGCCAC TCCTGACACC TTGAGCTCCA CATGGCG
Query= 20030531C-000079 (20030531C-000079) 20030531C-000079
(1157 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Bt#S11932784 Bovine mRNA for invariant chain, complete c... 733 0.0
Alignment gnl|UG|Hs#S3218985 Homo sapiens CD74 antigen (invariant polypep... 480 e-134
Alignment gnl|UG|Mm#S9705942 Mus musculus, clone MGC:40678 IMAGE:5401576,... 464 e-129
Alignment gnl|UG|Hs#S4020505 AGENCOURT_6408196 NIH_MGC_85 Homo sapiens cD... 460 e-128
Alignment gnl|UG|Ssc#S14891318 sn12_F09.f sn Sus scrofa cDNA 5', mRNA seq... 361 5e-98
Alignment gnl|UG|Mm#S9811060 AGENCOURT_8880917 NCI_CGAP_Co24 Mus musculus... 170 9e-41
Alignment gnl|UG|Hs#S4121886 UI-E-CI1-afo-p-07-0-UI.r2 UI-E-CI1 Homo sapi... 107 1e-21
Alignment gnl|UG|Hs#S4623361 Homo sapiens mRNA; cDNA DKFZp451O043 (from c... 40 0.22
Alignment gnl|UG|Mm#S8040254 Mus musculus phosphatase and tensin homolog ... 40 0.22
Alignment gnl|UG|Hs#S3817935 Homo sapiens CaM-KII inhibitory protein (CAM... 38 0.88
>gnl|UG|Bt#S11932784 Bovine mRNA for invariant chain, complete cds
/cds=(130,744) /gb=D83962 /gi=1374680 /ug=Bt.8934
/len=1364
Length = 1364
Score = 733 bits (370), Expect = 0.0
Identities = 550/610 (90%)
Strand = Plus / Plus
Query: 217 ggaaagaccccaggccagaaccatggaggaccagcgcgacctcatctccaaccatgagca 276
||||||||| ||| ||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 108 ggaaagaccagaggtcagaagcatggaagaccagcgtgacctcatctccaaccatgagca 167
Query: 277 gctgcccatgctgggccagcgccccggggcccccgagagcaagtgcagccgtggagctct 336
||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| ||
Sbjct: 168 gctgcccatgctgggccagcgccccggagcccaggagagcaagtgcagtcgtggagccct 227
Query: 337 gtacacaggcttttctgtcctggtggctctgctcctggctggccaggccaccaccgccta 396
|||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 228 gtacacgggcttttccgtcttggtggctctgctcctggctggccaggccaccactgccta 287
Query: 397 cttcctgtaccagcagcagggccggctggacaagctgacggtcacctctcagaacttgca 456
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 288 cttcctgtaccagcagcagggccggctggacaagctgacggtcacctcccagaacctgca 347
Query: 457 gctggagagcctgcggatgaagcttcccaagccctccaagcctttgagcaagatgcgggt 516
|||||||| |||||| ||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct: 348 gctggagaacctgcgcatgaagcttcccaagcctgccaagcctatgagccagatgcggat 407
Query: 517 ttccgcccccatgctgatgcaggccctgcccatggaaggcccggagcctatgcgcaacgc 576
|| | ||||||||||||| ||| |||||||||| |||||| ||||| ||| |||||
Sbjct: 408 ggccactcccatgctgatgcgggcgctgcccatggcaggcccagagcccatgaagaacgc 467
Query: 577 caccaagtacggcaacatgacccaggaccacgtgatgcacctgctcctgaagtctgaccc 636
||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct: 468 caccaagtacggcaacatgacacaggaccacgtgatgcacctgctcctgaaggcagaccc 527
Query: 637 cctgggagtgtacccgaagctgaaggggagcctcccagaaaacctgaagcacctcaagaa 696
|||| ||||||||| |||||||||||||||| |||||||||||||| ||||| ||| |
Sbjct: 528 cctgaaggtgtacccgcagctgaaggggagcctgccagaaaacctgaaacaccttaagga 587
Query: 697 caccatggacggtgtgaactggaagctctttgagaactggctgcgtcagtggctcttgtt 756
| ||||||| || || |||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 588 ctccatggatggcttggactggaagctctttgagagctggctgcatcagtggctcttgtt 647
Query: 757 tgaaatgagcaagaactcgctggaggagacaccctttgaggttccgccaaaagacccact 816
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
Sbjct: 648 tgaaatgagcaagaactcgctggaggagaagccctttgagggtccaccaaaagacccaat 707
Query: 817 ggagacggag 826
||||| ||||
Sbjct: 708 ggagatggag 717
Score = 79.8 bits (40), Expect = 3e-13
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 84 gtggcctcctgtggacgaatcagattgctcctccgccccaacttcaggaggcgagcccgg 143
|||||||||||| ||||||||||||| |||||| |||||||||||| |||| |||| |||
Sbjct: 1 gtggcctcctgtagacgaatcagattcctcctcagccccaacttcaagaggtgagcacgg 60
Query: 144 ggct 147
||||
Sbjct: 61 ggct 64
>gnl|UG|Hs#S3218985 Homo sapiens CD74 antigen (invariant polypeptide
of major histocompatibility complex, class II
antigen-associated) (CD74), mRNA /cds=(8,706)
/gb=NM_004355 /gi=10835070 /ug=Hs.84298 /len=1304
Length = 1304
Score = 480 bits (242), Expect = e-134
Identities = 558/662 (84%), Gaps = 6/662 (0%)
Strand = Plus / Plus
Query: 238 catggaggaccagcgcgacctcatctccaaccatgagcagctgcccatgctgggccagcg 297
|||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||| |||
Sbjct: 55 catggatgaccagcgcgaccttatctccaacaatgagcaactgcccatgctgggccggcg 114
Query: 298 ccccggggcccccgagagcaagtgcagccgtggagctctgtacacaggcttttctgtcct 357
||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 115 ccctggggccccggagagcaagtgcagccgcggagccctgtacacaggcttttccatcct 174
Query: 358 ggtggctctgctcctggctggccaggccaccaccgcctacttcctgtaccagcagcaggg 417
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ggtgactctgctcctcgctggccaggccaccaccgcctacttcctgtaccagcagcaggg 234
Query: 418 ccggctggacaagctgacggtcacctctcagaacttgcagctggagagcctgcggatgaa 477
|||||||||||| ||||| |||||||| |||||| |||||||||||| |||||| |||||
Sbjct: 235 ccggctggacaaactgacagtcacctcccagaacctgcagctggagaacctgcgcatgaa 294
Query: 478 gcttcccaagccctccaagcctttgagcaagatgcgggtttccgcccccatgctgatgca 537
|||||||||||| |||||||| ||||||||||||| | || |||| ||||||||||
Sbjct: 295 gcttcccaagcctcccaagcctgtgagcaagatgcgcatggccaccccgctgctgatgca 354
Query: 538 ggccctgcccatggaag----gccc--ggagcctatgcgcaacgccaccaagtacggcaa 591
||| |||||||||| || |||| || ||| |||| || ||||||||||| |||||
Sbjct: 355 ggcgctgcccatgggagccctgccccaggggcccatgcagaatgccaccaagtatggcaa 414
Query: 592 catgacccaggaccacgtgatgcacctgctcctgaagtctgaccccctgggagtgtaccc 651
|||||| ||||||| |||||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 415 catgacagaggaccatgtgatgcacctgctccagaatgctgaccccctgaaggtgtaccc 474
Query: 652 gaagctgaaggggagcctcccagaaaacctgaagcacctcaagaacaccatggacggtgt 711
| |||||||||||| |||| || ||||||| ||||| |||||||||||||| |
Sbjct: 475 gccactgaaggggagcttcccggagaacctgagacaccttaagaacaccatggagaccat 534
Query: 712 gaactggaagctctttgagaactggctgcgtcagtggctcttgtttgaaatgagcaagaa 771
|||||||| ||||||||| |||| ||| || |||||| ||||||||||||||| | |
Sbjct: 535 agactggaaggtctttgagagctggatgcaccattggctcctgtttgaaatgagcaggca 594
Query: 772 ctcgctggaggagacaccctttgaggttccgccaaaagacccactggagacggaggacct 831
||| ||||| | | ||| ||| | ||| || ||||| ||||||| ||||||||
Sbjct: 595 ctccttggagcaaaagcccactgacgctccaccgaaagagtcactggaactggaggaccc 654
Query: 832 gtcgtccgggctgggcgtgaccaagcaggatctcggccaagtcatcctgtaagagcagca 891
||| || |||||||| ||||||||||||||||| |||| |||| | ||| |||||||||
Sbjct: 655 gtcttctgggctgggtgtgaccaagcaggatctgggcccagtccccatgtgagagcagca 714
Query: 892 ga 893
||
Sbjct: 715 ga 716
>gnl|UG|Mm#S9705942 Mus musculus, clone MGC:40678 IMAGE:5401576,
mRNA, complete cds /cds=(81,707) /gb=BC030458
/gi=20988531 /ug=Mm.221232 /len=1634
Length = 1634
Score = 464 bits (234), Expect = e-129
Identities = 300/322 (93%)
Strand = Plus / Plus
Query: 228 aggccagaaccatggaggaccagcgcgacctcatctccaaccatgagcagctgcccatgc 287
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 70 aggccagaactatggaagaccagcgcgacctcatctccaaccatgagcagctgcccatac 129
Query: 288 tgggccagcgccccggggcccccgagagcaagtgcagccgtggagctctgtacacaggct 347
||||||||||||| || ||||| |||||||| |||||||| |||||||||||||||||||
Sbjct: 130 tgggccagcgccctggtgccccagagagcaaatgcagccgaggagctctgtacacaggct 189
Query: 348 tttctgtcctggtggctctgctcctggctggccaggccaccaccgcctacttcctgtacc 407
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 190 tttctgtcctggtggctctgctcctggctggccaggccaccacggcctacttcctgtacc 249
Query: 408 agcagcagggccggctggacaagctgacggtcacctctcagaacttgcagctggagagcc 467
|||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 250 agcagcagggccggctggacaagctgacagtcacctcccagaacctgcagctggagagcc 309
Query: 468 tgcggatgaagcttcccaagccctccaagcctttgagcaagatgcgggtttccgccccca 527
|||| ||||||||||||||||| |||||||||||||||||||| |||| || | ||||
Sbjct: 310 tgcgcatgaagcttcccaagcctcccaagcctttgagcaagatgagggtggccactccca 369
Query: 528 tgctgatgcaggccctgcccat 549
|| |||||||||| ||||||||
Sbjct: 370 tgatgatgcaggcgctgcccat 391
Score = 218 bits (110), Expect = 4e-55
Identities = 251/298 (84%)
Strand = Plus / Plus
Query: 575 gccaccaagtacggcaacatgacccaggaccacgtgatgcacctgctcctgaagtctgac 634
|||||| |||||||||||||||| ||||||||||||||||||||||| ||| || | |||
Sbjct: 423 gccaccgagtacggcaacatgacacaggaccacgtgatgcacctgcttctggaggcggac 482
Query: 635 cccctgggagtgtacccgaagctgaaggggagcctcccagaaaacctgaagcacctcaag 694
|||||| |||||||| ||||||||||||||| ||||||| |||||||| ||||| |||
Sbjct: 483 cccctgaaggtgtacccaaagctgaaggggagcttcccagagaacctgaaacaccttaag 542
Query: 695 aacaccatggacggtgtgaactggaagctctttgagaactggctgcgtcagtggctcttg 754
||||||||||| || | |||||| |||||||||||||| || |||||||||| ||
Sbjct: 543 aacaccatggagaccctggattggaaggtctttgagaactggatgtatcagtggctcctg 602
Query: 755 tttgaaatgagcaagaactcgctggaggagacaccctttgaggttccgccaaaagaccca 814
|||||||||||||||||||| |||||| ||| | ||||||||| | |||||| |||
Sbjct: 603 tttgaaatgagcaagaactccctggagaagaagagcactgaggttccactaaaagagcca 662
Query: 815 ctggagacggaggacctgtcgtccgggctgggcgtgaccaagcaggatctcggccaag 872
||||| | ||| |||||||| || ||||||||| || ||||| |||| || |||||||
Sbjct: 663 ctggacatggaagacctgtcatctgggctgggcatggccaagtaggacctgggccaag 720
>gnl|UG|Hs#S4020505 AGENCOURT_6408196 NIH_MGC_85 Homo sapiens cDNA
clone IMAGE:5499197 5', mRNA sequence
/clone=IMAGE:5499197 /clone_end=5' /gb=BM455935
/gi=18504975 /ug=Hs.446471 /len=1129
Length = 1129
Score = 460 bits (232), Expect = e-128
Identities = 461/536 (86%), Gaps = 6/536 (1%)
Strand = Plus / Plus
Query: 238 catggaggaccagcgcgacctcatctccaaccatgagcagctgcccatgctgggccagcg 297
|||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||| |||
Sbjct: 39 catggatgaccagcgcgaccttatctccaacaatgagcaactgcccatgctgggccggcg 98
Query: 298 ccccggggcccccgagagcaagtgcagccgtggagctctgtacacaggcttttctgtcct 357
||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 99 ccctggggccccggagagcaagtgcagccgcggagccctgtacacaggcttttccatcct 158
Query: 358 ggtggctctgctcctggctggccaggccaccaccgcctacttcctgtaccagcagcaggg 417
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggtgactctgctcctcgctggccaggccaccaccgcctacttcctgtaccagcagcaggg 218
Query: 418 ccggctggacaagctgacggtcacctctcagaacttgcagctggagagcctgcggatgaa 477
|||||||||||| ||||| |||||||| |||||| |||||||||||| |||||| |||||
Sbjct: 219 ccggctggacaaactgacagtcacctcccagaacctgcagctggagaacctgcgcatgaa 278
Query: 478 gcttcccaagccctccaagcctttgagcaagatgcgggtttccgcccccatgctgatgca 537
|||||||||||| |||||||| ||||||||||||| | || |||| ||||||||||
Sbjct: 279 gcttcccaagcctcccaagcctgtgagcaagatgcgcatggccaccccgctgctgatgca 338
Query: 538 ggccctgcccatggaag----gccc--ggagcctatgcgcaacgccaccaagtacggcaa 591
||| |||||||||| || |||| || ||| |||| || ||||||||||| |||||
Sbjct: 339 ggcgctgcccatgggagccctgccccaggggcccatgcagaatgccaccaagtatggcaa 398
Query: 592 catgacccaggaccacgtgatgcacctgctcctgaagtctgaccccctgggagtgtaccc 651
|||||| ||||||| |||||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 399 catgacagaggaccatgtgatgcacctgctccagaatgctgaccccctgaaggtgtaccc 458
Query: 652 gaagctgaaggggagcctcccagaaaacctgaagcacctcaagaacaccatggacggtgt 711
| |||||||||||| |||| || ||||||| ||||| |||||||||||||| |
Sbjct: 459 gccactgaaggggagcttcccggagaacctgagacaccttaagaacaccatggagaccat 518
Query: 712 gaactggaagctctttgagaactggctgcgtcagtggctcttgtttgaaatgagca 767
|||||||| ||||||||| |||| ||| || |||||| |||||||||||||||
Sbjct: 519 agactggaaggtctttgagagctggatgcaccattggctcctgtttgaaatgagca 574
>gnl|UG|Ssc#S14891318 sn12_F09.f sn Sus scrofa cDNA 5', mRNA sequence
/clone_end=5' /gb=CB469837 /gi=29276222 /ug=Ssc.6222
/len=557
Length = 557
Score = 361 bits (182), Expect = 5e-98
Identities = 189/190 (99%), Gaps = 1/190 (0%)
Strand = Plus / Minus
Query: 961 acctcatcccatgggcctctggcacctggctcgccgtcctccctggacacctcacgtctc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acctcatcccatgggcctctggcacctggctcgccgtcctccctggacacctcacgtctc 404
Query: 1021 ttcagaaggccaaggatgaacgacacagggaggccctgctgcccacagctccatccgcta 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttcagaaggccaaggatgaacgacacagggaggccctgctgcccacagctccatccgcta 344
Query: 1081 gcagggacacagggcccccggggacagcccgtgagcggggctggtgccactcctgacacc 1140
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcagggacacagggcccc-ggggacagcccgtgagcggggctggtgccactcctgacacc 285
Query: 1141 ttgagctcca 1150
||||||||||
Sbjct: 284 ttgagctcca 275
Score = 60.0 bits (30), Expect = 2e-07
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 867 gccaagtcatcctgtaagagcagcagacgc 896
||||||||||||||||||||||||||||||
Sbjct: 557 gccaagtcatcctgtaagagcagcagacgc 528
>gnl|UG|Mm#S9811060 AGENCOURT_8880917 NCI_CGAP_Co24 Mus musculus
cDNA clone IMAGE:6397053 5', mRNA sequence
/clone=IMAGE:6397053 /clone_end=5' /gb=BQ956686
/gi=22372164 /ug=Mm.234555 /len=1527
Length = 1527
Score = 170 bits (86), Expect = 9e-41
Identities = 178/208 (85%), Gaps = 3/208 (1%)
Strand = Plus / Plus
Query: 578 accaagtacggcaacatgacccaggaccacgtgatgcacctgctcctgaagtctgacccc 637
||||||||||||||||||||||||||||| |||||||| |||||| || ||||| |||
Sbjct: 126 accaagtacggcaacatgacccaggaccatgtgatgcatctgctcacgaggtctggaccc 185
Query: 638 ctgggagtgtacccgaagctgaaggggagcctcccagaaaacctgaagcacctcaagaac 697
||| | ||||||| |||||||||||| | ||||||| || |||||||| || ||||||
Sbjct: 186 ctg---gagtacccgcagctgaaggggaccttcccagagaatctgaagcatcttaagaac 242
Query: 698 accatggacggtgtgaactggaagctctttgagaactggctgcgtcagtggctcttgttt 757
||||||| || |||||||||||| |||| |||| |||| || |||||||||||||||
Sbjct: 243 tccatggatggcgtgaactggaagatcttcgagagctggatgaagcagtggctcttgttt 302
Query: 758 gaaatgagcaagaactcgctggaggaga 785
|| |||||||||||||| ||||||||||
Sbjct: 303 gagatgagcaagaactccctggaggaga 330
>gnl|UG|Hs#S4121886 UI-E-CI1-afo-p-07-0-UI.r2 UI-E-CI1 Homo sapiens
cDNA clone UI-E-CI1-afo-p-07-0-UI 5', mRNA sequence
/clone=UI-E-CI1-afo-p-07-0-UI /clone_end=5' /gb=BM704737
/gi=19017995 /ug=Hs.433867 /len=1466
Length = 1466
Score = 107 bits (54), Expect = 1e-21
Identities = 228/286 (79%)
Strand = Plus / Plus
Query: 608 gtgatgcacctgctcctgaagtctgaccccctgggagtgtacccgaagctgaaggggagc 667
|||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||
Sbjct: 84 gtgatgcacctgctccagaatgctgaccccctgaaggtgtacccgccactgaaggggagc 143
Query: 668 ctcccagaaaacctgaagcacctcaagaacaccatggacggtgtgaactggaagctcttt 727
|||| || ||||||| ||||| |||||||||||||| | |||||||| |||||
Sbjct: 144 ttcccggagaacctgagacaccttaagaacaccatggagaccatagactggaaggtcttt 203
Query: 728 gagaactggctgcgtcagtggctcttgtttgaaatgagcaagaactcgctggaggagaca 787
|||| |||| ||| || |||||| ||||||||||||||| | |||| ||||| | |
Sbjct: 204 gagagctggatgcaccattggctcctgtttgaaatgagcaggcactccttggagcaaaag 263
Query: 788 ccctttgaggttccgccaaaagacccactggagacggaggacctgtcgtccgggctgggc 847
||| ||| | ||| || ||||| ||||||| |||||||| ||| || ||||||||
Sbjct: 264 cccactgacgctccaccgaaagagtcactggaactggaggacccgtcttctgggctgggt 323
Query: 848 gtgaccaagcaggatctcggccaagtcatcctgtaagagcagcaga 893
||||||||||||||||| |||| |||| | ||| |||||||||||
Sbjct: 324 gtgaccaagcaggatctgggcccagtccccatgtgagagcagcaga 369
>gnl|UG|Hs#S4623361 Homo sapiens mRNA; cDNA DKFZp451O043 (from clone
DKFZp451O043) /gb=AL832007 /gi=21732547 /ug=Hs.147138
/len=5342
Length = 5342
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 346 cttttctgtcctggtggctctgct 369
|||||||||||||||| |||||||
Sbjct: 156 cttttctgtcctggtgtctctgct 133
>gnl|UG|Mm#S8040254 Mus musculus phosphatase and tensin homolog
(Pten), mRNA /cds=(949,2160) /gb=NM_008960 /gi=6679522
/ug=Mm.245395 /len=2160
Length = 2160
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 158 gacgtgccgccgccgccgcc 177
||||||||||||||||||||
Sbjct: 591 gacgtgccgccgccgccgcc 572
>gnl|UG|Hs#S3817935 Homo sapiens CaM-KII inhibitory protein
(CAM-KIIN), mRNA /cds=(179,418) /gb=NM_033259
/gi=15147233 /ug=Hs.343882 /len=591
Length = 591
Score = 38.2 bits (19), Expect = 0.88
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 160 cgtgccgccgccgccgcca 178
|||||||||||||||||||
Sbjct: 543 cgtgccgccgccgccgcca 561
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187610
Number of Sequences: 230285
Number of extensions: 187610
Number of successful extensions: 19002
Number of sequences better than 10.0: 48
length of query: 1157
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1138
effective length of database: 237,601,478
effective search space: 270390481964
effective search space used: 270390481964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)