>20030531C-000082 (20030531C-000082) 20030531C-000082 ACTCACTCGA CACCGACGCC GCTGCCGCCG CAGGCCCCTC CACGCCCACA CCCCCTACCC ACTGCCCAGC CATGGAGGCC ATCAAGAAGA AGATGCAGAT GCTGAAGCTG GACAAGGAGA ACGCCATCGA CCGGGCCGAG CAGGCGGAGT CGGATAAGAA AGCTGCTGAG GAGAAGTGCA AGCAGGTGGA GGAGGAGCTG ACGCACCTCC AGAAGAAGCT GAAGGGGACA GAGGATGAGC TGGACAAATA CTCCGAGAAC CTGAAGGACG CGCAGGAAAA GCTGGAGTTG AGCGAGAAGA AAGCCTCCGA CGCCGAAGGG GATGTAGCAG CTCTCAATCG GCGCATCCAA CTCGTTGAGG AGGAGTTGGA CAGGGCTCAG GAACGACTGG CCACAGCCCT GCAGAAGCTT GAGGAGGCAG AAAAGGCTGC AGATGAGAGC GAGAGAGGAA TGAAGGTGAT AGAAAACCGG GCCATGAAAG ATGAGGAGAA GATGGAGATT CAGGAGATGC AGCTCAAAGA GGCCAAGCAC ATTGCCGAGG AGGCCGACCG CAAATACGAG GAGGTAGCTC GTAAGTTGGT CATCCTGGAG GGCGAGCTGG AGAGGGCAGA GGAGCGTGCC GAGGTGTCTG AACTAAAATG TGGTGACCTG GAAGAAGAAC TCAAGAATGT CACCAACAAC CTGAAGTCGC TAGAGGCTGC ATCTGAAAAG TATTCTGAAA AGGAGGATAA ATATGAAGAA GAGATTAAAC TTCTGTCTGA CAAACTGAAA GAGGCTGAGA CCCGTGCTGA ATTTGCAGAG AGAACAGTTG CAAAACTGGA AAAGACCATC GATGACCTGG AAGAAAAACT TGCCCAGGCC AAAGAAAAGA ACGTGGGCTT ACATCAAACA CTGGATCAGA CACTAAACGA ACTAAACTGT ATATAACCAA AACAGAAAAA GTCTCGTTCC ATCAAAAACT CCCAAGCTAC GTTGTTTTTC TCTTCTCTTG GTAGAAGTTT CTTTTGTTTT TTGCCCCCTA TGCTTTTGCC TGAAACTGGA AATGTCAGCA TTTATAGATA CGTGAACCCA ATATTTTTTT TGTTATCAAA AAAAAACTTT TTTAAACCCC CCAAGTTTAA AAATTCTTTT TTTCCTTTTC CCTTTTTTTT TTTTCCAAGG GTGGGCCCCC CCCCCCCCTT TTTTTTTTCT CCCACCCCTT CTTTTTTTTT TTTTTT
Query= 20030531C-000082 (20030531C-000082) 20030531C-000082
(1216 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, compl... 1287 0.0
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds... 973 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clo... 658 0.0
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRN... 250 1e-64
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mR... 236 2e-60
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA c... 236 2e-60
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mR... 224 7e-57
Alignment gnl|UG|Bt#S12373623 IMU602702602.R1 CSEQFXL22 stomach-omasum Bo... 186 2e-45
Alignment gnl|UG|Bt#S12373656 IMU602702671.R1 CSEQFXL22 stomach-omasum Bo... 159 4e-37
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7... 155 6e-36
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 1287 bits (649), Expect = 0.0
Identities = 687/697 (98%), Gaps = 2/697 (0%)
Strand = Plus / Plus
Query: 312 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 192
Query: 372 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 252
Query: 432 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 312
Query: 492 atggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgc 372
Query: 552 aaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagag 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagag 432
Query: 612 gagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtc 492
Query: 672 accaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaa 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 accaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaa 552
Query: 732 tatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaa 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaa 612
Query: 792 tttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaactt 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaactt 672
Query: 852 gcccaggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaa 911
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 673 gcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaa 732
Query: 912 ctaaactgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacg 971
|||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 733 ctaaactgtatataaccaaaacag-aagagtctcgttccatcagaaactccagagctacg 791
Query: 972 ttgtttttctcttctcttggtagaagtttcttttgtt 1008
|||||||||||||||||| ||||||||||||||||
Sbjct: 792 -tgtttttctcttctcttgtaagaagtttcttttgtt 827
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 973 bits (491), Expect = 0.0
Identities = 646/695 (92%), Gaps = 2/695 (0%)
Strand = Plus / Plus
Query: 315 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 374
||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 186 gaaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggaggagttggacagg 245
Query: 375 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 434
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct: 246 gctcaggaacgactggccacggccctgcagaagctggaggaggcagaaaaagctgcagat 305
Query: 435 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 494
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 306 gagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatg 365
Query: 495 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 554
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 366 gagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaa 425
Query: 555 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 614
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 426 tacgaggaggtagctcgtaagctggtcatcctggagggtgagctggagagggcagaggag 485
Query: 615 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 674
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 486 cgtgcggaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgttact 545
Query: 675 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 734
||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 aacaatctgaaatctctggaggctgcatctgaaaagtattctgaaaaggaggacaaatat 605
Query: 735 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 794
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaagaagaaattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 665
Query: 795 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgcc 854
||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 666 gcagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgcc 725
Query: 855 caggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaacta 914
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 726 caggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaactt 785
Query: 915 aactgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacgt-t 973
|||||||||||| |||||||| || ||||| |||||| || |||||| |||| |||
Sbjct: 786 aactgtatataagcaaaacag-aagagtcttgttccaacagaaactctggagctccgtgg 844
Query: 974 gtttttctcttctcttggtagaagtttcttttgtt 1008
|| |||||||||||||| ||||||| ||||||||
Sbjct: 845 gtctttctcttctcttgtaagaagttccttttgtt 879
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 658 bits (332), Expect = 0.0
Identities = 542/612 (88%)
Strand = Plus / Plus
Query: 315 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 374
||||| |||| ||| |||||||| || ||||||||||| | |||||||| ||||| ||
Sbjct: 173 gaaggagatgcagccgctctcaaccgccgcatccaactgctggaggaggaactggaccgg 232
Query: 375 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 434
|||||||| | |||||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 233 gctcaggagcagctggccacagccctgcagaatctggaagaggcagagaaggctgctgat 292
Query: 435 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 494
||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 293 gagagtgagagaggcatgaaggtaatagagaaccgagccatgaaagatgaggaaaagatg 352
Query: 495 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 554
||||| | |||||||||||||||||| ||||||||||| | || || |||||||||||
Sbjct: 353 gagatcctggagatgcagctcaaagaagccaagcacatcactgatgaagccgaccgcaag 412
Query: 555 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 614
|| |||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct: 413 tatgaggaggttgctcgtaagttggtcatcctggagggtgagctgaaaagagcagaggag 472
Query: 615 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 674
|| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 473 cgggcggaggtatctgaactaaagtgtggtgacctggaagaagagctcaagaatgtaact 532
Query: 675 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 734
||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 aacaatctgaaatcactggaggctgcttctgaaaagtattctgaaaaggaggataaatat 592
Query: 735 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 794
|||||||| || || |||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 593 gaagaagaaatcaagcttctgtctgacaagctgaaggaggctgagacccgagctgagttt 652
Query: 795 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgcc 854
||||| || |||||| | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 653 gcagaaaggacagtttctaaactggagaagacaatcgatgacctggaagaaaaacttgcc 712
Query: 855 caggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaacta 914
|||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct: 713 caggccaaagaagagaatgtgggcttacatcagacactggaccagacactaaacgaactt 772
Query: 915 aactgtatataa 926
||||||||||||
Sbjct: 773 aactgtatataa 784
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 250 bits (126), Expect = 1e-64
Identities = 351/426 (82%)
Strand = Plus / Plus
Query: 177 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 236
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 237 gagctggacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcgag 296
||| |||| || || |||||| | ||||||| || ||||| || |||||| | |||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 297 aagaaagcctccgacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgtt 356
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 357 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 416
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 417 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 476
|| || || || || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 380 gctgagaaagccgcggatgagagcgagagaggaatgaaggtcattgaaaaccgggccatg 439
Query: 477 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 536
|| |||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||
Sbjct: 440 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaagccaagcacatcgct 499
Query: 537 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 596
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 500 gaggactcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggggag 559
Query: 597 ctggag 602
||||||
Sbjct: 560 ctggag 565
Score = 117 bits (59), Expect = 1e-24
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 67 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 126
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 127 tcgaccgggccgagcaggc 145
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 723 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 782
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 783 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 842
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 843 ga 844
||
Sbjct: 806 ga 807
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(37,891) /gb=NM_024427 /gi=13270470 /ug=Mm.121878
/len=1159
Length = 1159
Score = 236 bits (119), Expect = 2e-60
Identities = 380/467 (81%)
Strand = Plus / Plus
Query: 342 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 401
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 307 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 366
Query: 402 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 461
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 367 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 426
Query: 462 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 521
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 427 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 486
Query: 522 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 581
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 487 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 546
Query: 582 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 641
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 547 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 606
Query: 642 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 701
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 607 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 666
Query: 702 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 761
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 667 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 726
Query: 762 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagt 808
|| ||||| |||||||| || || ||||| |||||||||||| ||||
Sbjct: 727 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagt 773
Score = 95.6 bits (48), Expect = 5e-18
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 70 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 129
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 35 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 94
Query: 130 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 189
| || || ||||| |||||| | |||||||| || || || || | |||||||| |||
Sbjct: 95 atcgagctgagcaagcggaggctgataagaaggcggcggaagaccggagcaagcagctgg 154
Query: 190 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 249
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 155 aagatgagctggtgtcactgcaaaagaaactcaagggcactgaagatgaactggacaaat 214
Query: 250 actccgag 257
||||||||
Sbjct: 215 actccgag 222
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 236 bits (119), Expect = 2e-60
Identities = 410/507 (80%)
Strand = Plus / Plus
Query: 78 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 137
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 138 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 197
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 198 ctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaatactccgag 257
||| | || || |||||||| |||| || || ||||| ||||||||||| ||||||
Sbjct: 123 ctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatattccgag 182
Query: 258 aacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaagcctccgacgccgaa 317
|| || || || ||||| ||||||||| || ||||| || ||| |||| || |||
Sbjct: 183 gctctcaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgatgctgaa 242
Query: 318 ggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagggct 377
| |||||||| |||| || | ||||||||||| |||||||| ||| ||||| | ||
Sbjct: 243 gccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggaccgtgcc 302
Query: 378 caggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgag 437
||||| |||||||| ||||| | ||||| ||||||||||| || ||||| |||||||||
Sbjct: 303 caggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagcagatgag 362
Query: 438 agcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggag 497
|| |||||||| ||||| || || |||| ||| ||| || ||||||||||| |||||
Sbjct: 363 agtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaa 422
Query: 498 attcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatac 557
||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 423 attcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtat 482
Query: 558 gaggaggtagctcgtaagttggtcatc 584
|| ||||| || |||||| ||||||||
Sbjct: 483 gaagaggtggcccgtaagctggtcatc 509
Score = 54.0 bits (27), Expect = 2e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 720 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 779
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 780 acccgtgctgaatttgcagagag 802
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 224 bits (113), Expect = 7e-57
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 354 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 413
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 401 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 460
Query: 414 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 473
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 461 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 520
Query: 474 atgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacatt 533
||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct: 521 atgaaggatgaggagaagatggaactgcaggagatgcagctgaaggaggccaagcacatc 580
Query: 534 gccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggc 593
|| ||||| | ||||||||||| || ||||| || | ||| |||| |||||||| ||
Sbjct: 581 gctgaggattcagaccgcaaatatgaagaggtggccaggaagctggtgatcctggaagga 640
Query: 594 gagctggag 602
|||||||||
Sbjct: 641 gagctggag 649
Score = 174 bits (88), Expect = 6e-42
Identities = 154/176 (87%)
Strand = Plus / Plus
Query: 69 gccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 128
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 175
Query: 129 gaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtg 188
||||| ||||||||||| || | || ||||| |||||||| ||||||||| ||
Sbjct: 176 gaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagctg 235
Query: 189 gaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctgga 244
|||||||||| | | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 236 gaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtgga 291
Score = 54.0 bits (27), Expect = 2e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 726 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 785
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 773 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 832
Query: 786 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 844
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 833 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 891
>gnl|UG|Bt#S12373623 IMU602702602.R1 CSEQFXL22 stomach-omasum Bos
taurus cDNA, mRNA sequence /gb=CB168959 /gi=28155085
/ug=Bt.6442 /len=792
Length = 792
Score = 186 bits (94), Expect = 2e-45
Identities = 229/274 (83%)
Strand = Plus / Minus
Query: 343 gcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgc 402
||||||| || |||||||| |||||||| | || ||||| || ||||| ||||| ||||
Sbjct: 786 gcatccagctggttgaggaagagttggatcgtgcccaggagcgtctggcaacagctctgc 727
Query: 403 agaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatag 462
||||||| |||||||| || ||||| ||||||||||| |||||||| ||||| || || |
Sbjct: 726 agaagctggaggaggccgagaaggcagcagatgagagtgagagaggcatgaaagtcattg 667
Query: 463 aaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagagg 522
| | ||| ||| || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 666 agagccgagcccaaaaggatgaggagaagatggagattcaggagatccagctgaaagagg 607
Query: 523 ccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtca 582
|||||||||| || ||||| ||||||||||| || || ||||| || |||||| ||||||
Sbjct: 606 ccaagcacatcgctgaggatgccgaccgcaagtatgaagaggtggcccgtaagctggtca 547
Query: 583 tcctggagggcgagctggagagggcagaggagcg 616
|| | ||| | || |||||| | |||||||||||
Sbjct: 546 tcattgagagtgacctggagcgtgcagaggagcg 513
>gnl|UG|Bt#S12373656 IMU602702671.R1 CSEQFXL22 stomach-omasum Bos
taurus cDNA, mRNA sequence /gb=CB169024 /gi=28155150
/ug=Bt.12477 /len=782
Length = 782
Score = 159 bits (80), Expect = 4e-37
Identities = 164/192 (85%)
Strand = Plus / Minus
Query: 411 gaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgg 470
|||||||| || ||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct: 770 gaggaggctgagaaggcagctgatgagagcgagagaggaatgaaggtcatcgaaaaccga 711
Query: 471 gccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcac 530
|| ||||| |||||||| ||||||||| | |||||||||||||| || ||||||||||||
Sbjct: 710 gctatgaaggatgaggaaaagatggagctgcaggagatgcagctgaaggaggccaagcac 651
Query: 531 attgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggag 590
|| |||||||| | ||||||||||| |||||||| || | || |||| ||||||||
Sbjct: 650 atcgccgaggattcggaccgcaaatatgaggaggtggccaggaaactggtgatcctggaa 591
Query: 591 ggcgagctggag 602
|| |||||||||
Sbjct: 590 ggagagctggag 579
Score = 54.0 bits (27), Expect = 2e-05
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 726 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 785
|||||||||||||| ||||| ||||| ||| || || || || ||||||||||||||
Sbjct: 455 gataaatatgaagaggagatcaaactgctggaggagaagctaaaggaggctgagacccga 396
Query: 786 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 844
|| || ||||| || || | || ||||| |||| || ||||||||||||||||||||
Sbjct: 395 gcagagtttgctgaaaggtcggtggcaaagttggagaaaaccatcgatgacctggaaga 337
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397. /gb=AK056565 /gi=16552003 /ug=Hs.211221
/len=3108
Length = 3108
Score = 155 bits (78), Expect = 6e-36
Identities = 117/130 (90%)
Strand = Plus / Minus
Query: 183 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 242
||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 1353 caggtggaggaggagctgacgcacctccagaagaaactaaaagggacagaggacgagctg 1294
Query: 243 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaa 302
|| ||||| |||||| ||||||||||||||||||| ||||||||| | | ||||||||
Sbjct: 1293 gataaatattccgaggacctgaaggacgcgcaggagaagctggagctcacggagaagaag 1234
Query: 303 gcctccgacg 312
||||||||||
Sbjct: 1233 gcctccgacg 1224
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 357490
Number of Sequences: 230285
Number of extensions: 357490
Number of successful extensions: 42517
Number of sequences better than 10.0: 814
length of query: 1216
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1197
effective length of database: 237,601,478
effective search space: 284408969166
effective search space used: 284408969166
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)