>20030531C-000083 (20030531C-000083) 20030531C-000083 TTTCTCCAAA TAAGTCCCGA AAAGGGGCAC TTTCCAGCAG CTGCGGCCAG CGGTGCCGAC GTCAGGCCCT CCCCCAGCGG TGCTGACGTC GACGGCCGGG CAGGGTGACC TCATCGCCCC GACGGCGGCC CTGCCGGGGG CGGGGAGAGG CAGGGGCGGC CCCCCGGCGT AGGAAAAGGC TCGGGGGCCG GGGCGCGGCT GCTGCAGCTC TTGCAAGAGC AGAGCCGAGC CGAGCGCCCG CCGCTGCCCG CCGCCCGCTG CGTGCGCCTC CGCGCCATGG CTGGCCTCAA CTCCCTGGAG GCGGTGAAAC GCAAGATCCA GGCCCTGCAG CAGCAGGCGG ACGAGGCAGA GGATCGCGCG CAGGGCCTGC AGCGGGAGCT GGACGGCGAG CGCGAGCGGC GGGAGAAAGC CGAAGGGGAT GTAGCAGCTC TCAATCGGCG CATCCAACTC GTTGAGGAGG AGTTGGACAG GGCTCAGGAA CGACTGGCCA CAGCCCTGCA GAAGCTTGAG GAGGCAGAAA AGGCTGCAGA TGAGAGCGAG AGAGGAATGA AGGTGATAGA AAACCGGGCC ATGAAAGATG AGGAGAAGAT GGAGATTCAG GAGATGCAGC TCAAAGAGGC CAAGCACATT GCCGAGGAGG CCGACCGCAA ATACGAGGAG GTAGCTCGTA AGTTGGTCAT CCTGGAGGGC GAGCTGGAGA GGGCAGAGGA GCGTGCCGAG GTGTCTGAAC TAAAATGTGG TGACCTGGAA GAAGAACTCA AGAATGTCAC CAACAACCTG AAGTCGCTAG AGGCTGCATC TGAAAAGTAT TCTGAAAAGG AGGATAAATA TGAAGAAGAG ATTAAACTTC TGTCTGACAA ACTGAAAGAG GCTGAGACCC GTGCTGAATT TGCAGAGAGA ACAGTTGCAA AACTGGAAAA GACCATCGAT GACCTGGAAG AAAAACTTGC CCAGGCCAAA GAAGAGAACG TGGGCTTACA TCAGACACTG GATCAGACAC TAAACGAACT AAACTGTATA TAACCAAAAC AGAAGAGTCT CGTTCCATCA GAAACTCCAG AGCTACGTGT TTTTCTCTTC TCTTGTAAGA AGTTTCTTTT GTTATTGCCT CTTTGCTTTG CTGGAAATGT CAAGCAAATT ATGAATACGT GACCAAATAT TTTGTATCAA AAAA
Query= 20030531C-000083 (20030531C-000083) 20030531C-000083
(1174 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, compl... 1683 0.0
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds... 1364 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clo... 846 0.0
Alignment gnl|UG|Hs#S4615897 Homo sapiens cDNA FLJ38227 fis, clone FCBBF2... 329 2e-88
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7... 250 1e-64
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mR... 236 2e-60
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mR... 224 7e-57
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRN... 200 1e-49
Alignment gnl|UG|Bt#S12373623 IMU602702602.R1 CSEQFXL22 stomach-omasum Bo... 186 2e-45
Alignment gnl|UG|Mm#S10840510 Mus musculus 7 days embryo whole body cDNA,... 176 2e-42
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 1683 bits (849), Expect = 0.0
Identities = 852/853 (99%)
Strand = Plus / Plus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 60
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 120
Query: 397 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 180
Query: 457 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 240
Query: 517 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 300
Query: 577 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 360
Query: 637 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 420
Query: 697 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 480
Query: 757 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 540
Query: 817 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 600
Query: 877 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 660
Query: 937 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 720
Query: 997 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 780
Query: 1057 ccagagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgc 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ccagagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgc 840
Query: 1117 tttgctggaaatg 1129
|||||||||||||
Sbjct: 841 tttgctggaaatg 853
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 1364 bits (688), Expect = 0.0
Identities = 845/895 (94%), Gaps = 3/895 (0%)
Strand = Plus / Plus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 397 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 456
||||| |||||||| ||||| ||||| || || ||||| || |||||||| |||||||||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtggccgccctcaaccgacgcatccagctcgttgag 230
Query: 457 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 516
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 231 gaggagttggacagggctcaggaacgactggccacggccctgcagaagctggaggaggca 290
Query: 517 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 576
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gaaaaagctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaag 350
Query: 577 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 351 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaa 410
Query: 637 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 696
||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 411 gaggctgaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctg 470
Query: 697 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 756
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagagggcagaggagcgtgcggaggtgtctgaactaaaatgtggtgacctggaagaagaa 530
Query: 757 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 816
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||||
Sbjct: 531 ctcaagaatgttactaacaatctgaaatctctggaggctgcatctgaaaagtattctgaa 590
Query: 817 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 876
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaggaggacaaatatgaagaagaaattaaacttctgtctgacaaactgaaagaggctgag 650
Query: 877 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 936
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 651 acccgtgctgaatttgcagagagaacggttgcaaaactggaaaagacaattgatgacctg 710
Query: 937 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 996
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaagagaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 770
Query: 997 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 1056
|||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 771 acactaaacgaacttaactgtatataagcaaaacagaagagtcttgttccaacagaaact 830
Query: 1057 ccagagctacgt--gtttttctcttctcttgtaagaagtttcttttgttattgcc-tctt 1113
| ||||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 831 ctggagctccgtgggtctttctcttctcttgtaagaagttccttttgttattgccatctt 890
Query: 1114 tgctttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatc 1168
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 891 cgctttgctggaaatgtcaagcaaattatgaatacatgaccaaatattttgtatc 945
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 846 bits (427), Expect = 0.0
Identities = 667/747 (89%)
Strand = Plus / Plus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
|| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 397 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 456
||||| |||||||| ||||| |||| ||| |||||||| || ||||||||||| | |||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaactgctggag 217
Query: 457 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 516
||||| ||||| |||||||||| | |||||||||||||||||||| || || ||||||
Sbjct: 218 gaggaactggaccgggctcaggagcagctggccacagccctgcagaatctggaagaggca 277
Query: 517 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 576
|| |||||||| |||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 278 gagaaggctgctgatgagagtgagagaggcatgaaggtaatagagaaccgagccatgaaa 337
Query: 577 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 636
|||||||| ||||||||||| | |||||||||||||||||| ||||||||||| | ||
Sbjct: 338 gatgaggaaaagatggagatcctggagatgcagctcaaagaagccaagcacatcactgat 397
Query: 637 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 696
|| ||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 398 gaagccgaccgcaagtatgaggaggttgctcgtaagttggtcatcctggagggtgagctg 457
Query: 697 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 756
| || ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 458 aaaagagcagaggagcgggcggaggtatctgaactaaagtgtggtgacctggaagaagag 517
Query: 757 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 816
||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||||||
Sbjct: 518 ctcaagaatgtaactaacaatctgaaatcactggaggctgcttctgaaaagtattctgaa 577
Query: 817 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 876
||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||||
Sbjct: 578 aaggaggataaatatgaagaagaaatcaagcttctgtctgacaagctgaaggaggctgag 637
Query: 877 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 936
||||| ||||| |||||||| || |||||| | |||||||| ||||| ||||||||||||
Sbjct: 638 acccgagctgagtttgcagaaaggacagtttctaaactggagaagacaatcgatgacctg 697
Query: 937 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 996
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 698 gaagaaaaacttgcccaggccaaagaagagaatgtgggcttacatcagacactggaccag 757
Query: 997 acactaaacgaactaaactgtatataa 1023
|||||||||||||| ||||||||||||
Sbjct: 758 acactaaacgaacttaactgtatataa 784
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1118 ttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgt 1165
|||| ||||||| |||||| || |||||| | ||||||||||||||||
Sbjct: 886 ttgcaggaaatgccaagcagataatgaattcatgaccaaatattttgt 933
>gnl|UG|Hs#S4615897 Homo sapiens cDNA FLJ38227 fis, clone
FCBBF2004090. /gb=AK095546 /gi=21754822 /ug=Hs.407008
/len=1967
Length = 1967
Score = 329 bits (166), Expect = 2e-88
Identities = 215/229 (93%), Gaps = 3/229 (1%)
Strand = Plus / Plus
Query: 943 aaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacacta 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacacta 951
Query: 1003 aacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactccagag 1062
|||||||| |||||||||||| |||||||||||||||| |||||| ||||||||| |||
Sbjct: 952 aacgaacttaactgtatataagcaaaacagaagagtcttgttccaacagaaactctggag 1011
Query: 1063 ctacgt--gtttttctcttctcttgtaagaagtttcttttgttattgcc-tctttgcttt 1119
|| ||| || ||||||||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 1012 ctccgtgggtctttctcttctcttgtaagaagttccttttgttattgccatcttcgcttt 1071
Query: 1120 gctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatc 1168
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1072 gctggaaatgtcaagcaaattatgaatacatgaccaaatattttgtatc 1120
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397. /gb=AK056565 /gi=16552003 /ug=Hs.211221
/len=3108
Length = 3108
Score = 250 bits (126), Expect = 1e-64
Identities = 195/213 (91%), Gaps = 5/213 (2%)
Strand = Plus / Minus
Query: 1 tttctccaaataagtcccgaaaaggggcactttccagcagctgcggccagcggtgccgac 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1102 tttctccaaataagtcccgaaaaggggcactttccagcagctgtggccagcggtgccgac 1043
Query: 61 gtcaggccctcccccagcggtgctgacgtcgacggccgggcagggtgacctcatcgcccc 120
||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||
Sbjct: 1042 gtcaggccctcccccagcggtgctgacgtcggcggtccggccgggtgacctcatcgcccc 983
Query: 121 gacggcggccctgccggggg-cggggagaggcaggggcggccccccggcgtaggaaaagg 179
|||||| ||| ||||||| ||||||||||| |||||||||||| ||| ||| |||||
Sbjct: 982 gacggcagccggcccggggggcggggagaggcgggggcggccccc--gcgcaggcaaagg 925
Query: 180 ctcggggg-ccggggcgcggctgctgcagctct 211
|| ||||| |||||||||||||| |||||||||
Sbjct: 924 cttggggggccggggcgcggctg-tgcagctct 893
Score = 224 bits (113), Expect = 7e-57
Identities = 128/133 (96%)
Strand = Plus / Minus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 772
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 712
Query: 397 cggcgggagaaag 409
||||| |||||||
Sbjct: 711 cggcgcgagaaag 699
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(37,891) /gb=NM_024427 /gi=13270470 /ug=Mm.121878
/len=1159
Length = 1159
Score = 236 bits (119), Expect = 2e-60
Identities = 380/467 (81%)
Strand = Plus / Plus
Query: 439 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 498
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 307 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 366
Query: 499 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 558
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 367 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 426
Query: 559 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 618
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 427 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 486
Query: 619 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 678
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 487 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 546
Query: 679 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 738
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 547 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 606
Query: 739 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 798
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 607 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 666
Query: 799 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 858
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 667 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 726
Query: 859 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagt 905
|| ||||| |||||||| || || ||||| |||||||||||| ||||
Sbjct: 727 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagt 773
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 224 bits (113), Expect = 7e-57
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 451 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 510
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 401 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 460
Query: 511 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 570
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 461 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 520
Query: 571 atgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacatt 630
||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct: 521 atgaaggatgaggagaagatggaactgcaggagatgcagctgaaggaggccaagcacatc 580
Query: 631 gccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggc 690
|| ||||| | ||||||||||| || ||||| || | ||| |||| |||||||| ||
Sbjct: 581 gctgaggattcagaccgcaaatatgaagaggtggccaggaagctggtgatcctggaagga 640
Query: 691 gagctggag 699
|||||||||
Sbjct: 641 gagctggag 649
Score = 54.0 bits (27), Expect = 2e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 823 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 882
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 773 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 832
Query: 883 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 941
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 833 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 891
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 200 bits (101), Expect = 1e-49
Identities = 221/261 (84%)
Strand = Plus / Plus
Query: 439 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 498
||||| || ||||| |||||||||||||| |||| ||||| || ||||| |||||| ||
Sbjct: 305 cgcattcagctcgtagaggaggagttggatcgggcacaggagcgcctggctacagccttg 364
Query: 499 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 558
|| ||||| |||||||| || || || || |||||||||||||||||||||||||| ||
Sbjct: 365 caaaagctggaggaggctgagaaagccgcggatgagagcgagagaggaatgaaggtcatt 424
Query: 559 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 618
||||||||||||||||| |||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 425 gaaaaccgggccatgaaggatgaggaaaagatggagctgcaggagatgcagctgaaggaa 484
Query: 619 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 678
||||||||||| || ||||| | ||||||||||| |||||||| || | ||| ||||
Sbjct: 485 gccaagcacatcgctgaggactcagaccgcaaatatgaggaggtggccaggaagctggtg 544
Query: 679 atcctggagggcgagctggag 699
|||||||| || |||||||||
Sbjct: 545 atcctggaaggggagctggag 565
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 820 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 879
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 880 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 939
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 940 ga 941
||
Sbjct: 806 ga 807
>gnl|UG|Bt#S12373623 IMU602702602.R1 CSEQFXL22 stomach-omasum Bos
taurus cDNA, mRNA sequence /gb=CB168959 /gi=28155085
/ug=Bt.6442 /len=792
Length = 792
Score = 186 bits (94), Expect = 2e-45
Identities = 229/274 (83%)
Strand = Plus / Minus
Query: 440 gcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgc 499
||||||| || |||||||| |||||||| | || ||||| || ||||| ||||| ||||
Sbjct: 786 gcatccagctggttgaggaagagttggatcgtgcccaggagcgtctggcaacagctctgc 727
Query: 500 agaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatag 559
||||||| |||||||| || ||||| ||||||||||| |||||||| ||||| || || |
Sbjct: 726 agaagctggaggaggccgagaaggcagcagatgagagtgagagaggcatgaaagtcattg 667
Query: 560 aaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagagg 619
| | ||| ||| || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 666 agagccgagcccaaaaggatgaggagaagatggagattcaggagatccagctgaaagagg 607
Query: 620 ccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtca 679
|||||||||| || ||||| ||||||||||| || || ||||| || |||||| ||||||
Sbjct: 606 ccaagcacatcgctgaggatgccgaccgcaagtatgaagaggtggcccgtaagctggtca 547
Query: 680 tcctggagggcgagctggagagggcagaggagcg 713
|| | ||| | || |||||| | |||||||||||
Sbjct: 546 tcattgagagtgacctggagcgtgcagaggagcg 513
>gnl|UG|Mm#S10840510 Mus musculus 7 days embryo whole body cDNA,
RIKEN full-length enriched library, clone:C430002D13
product:TROPOMYOSIN 4 homolog [Homo sapiens], full
insert sequence. /cds=(66,578) /gb=AK049383 /gi=26340121
/ug=Mm.102692 /len=2064
Length = 2064
Score = 176 bits (89), Expect = 2e-42
Identities = 122/133 (91%)
Strand = Plus / Plus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 66 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 125
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
|| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 126 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 185
Query: 397 cggcgggagaaag 409
||||| |||||||
Sbjct: 186 cggcgcgagaaag 198
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 206868
Number of Sequences: 230285
Number of extensions: 206868
Number of successful extensions: 17670
Number of sequences better than 10.0: 62
length of query: 1174
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1155
effective length of database: 237,601,478
effective search space: 274429707090
effective search space used: 274429707090
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)