Search to UniGene2 database
Query= 20030531C-000104 (20030531C-000104) 20030531C-000104
(1059 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S1727666 Homo sapiens 3-hydroxysteroid epimerase (ROD... 462 e-128
Alignment gnl|UG|Bt#S14885387 732711 MARC 6BOV Bos taurus cDNA 5', mRNA s... 280 1e-73
Alignment gnl|UG|Hs#S1727665 Homo sapiens microsomal NAD+-dependent retin... 272 3e-71
Alignment gnl|UG|Mm#S10827633 Mus musculus retinol dehydrogenase similar ... 262 3e-68
Alignment gnl|UG|Mm#S9679486 Mus musculus retinol dehydrogenase 1 (all tr... 246 2e-63
Alignment gnl|UG|Mm#S8539592 Mus musculus retinol dehydrogenase 7 (Rdh7),... 246 2e-63
Alignment gnl|UG|Mm#S8082048 Mus musculus hydroxysteroid (17-beta) dehydr... 242 3e-62
Alignment gnl|UG|Mm#S9897514 Mus musculus expressed sequence AI121090 (AI... 230 1e-58
Alignment gnl|UG|Mm#S8039402 Mus musculus retinol dehydrogenase 6 (Rdh6),... 224 6e-57
Alignment gnl|UG|Mm#S9733005 Mus musculus cis-retinol/3alpha hydroxystero... 198 4e-49
>gnl|UG|Hs#S1727666 Homo sapiens 3-hydroxysteroid epimerase (RODH),
mRNA /cds=(111,1064) /gb=NM_003725 /gi=19743807
/ug=Hs.11958 /len=1512
Length = 1512
Score = 462 bits (233), Expect = e-128
Identities = 428/493 (86%)
Strand = Plus / Plus
Query: 567 ctcaaagtgaacctcattggtgtgacagaggtgaccttgagcatgcttcccttggtgaag 626
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct: 510 ctcaaagtgaacctcattggtgtgatccaggtgaccttgagcatgcttcctttggtgagg 569
Query: 627 aaagcacaggggagaattgtcaatgtctccagcattctgggaagagttgctttctttgga 686
| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 570 agagcacggggaagaattgtcaatgtctccagcattctgggaagagttgctttctttgta 629
Query: 687 gcagtctactctagctccaagcatggagtggaagccttttcagatgtcctgagatgtgag 746
| || ||||| | ||||||| ||||||||||||||||||||||| | ||||| |||||
Sbjct: 630 ggaggctactgtgtctccaagtatggagtggaagccttttcagatattctgaggcgtgag 689
Query: 747 cttcagcattttggggtgaaagtcagcatagttgaacctggttacttcagaacaggaatg 806
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 690 attcaacattttggggtgaaaatcagcatagttgaacctggctacttcagaacgggaatg 749
Query: 807 acagatgtgcagaagtcctcagaggcaatgaagcaagtctggaaagaagtccctgctcat 866
||| | || |||||| |||| |||||||||| |||||||||| ||| |||
Sbjct: 750 acaaacatgacacagtccttagagcgaatgaagcaaagttggaaagaagcccccaagcat 809
Query: 867 attaaggacacctatggacagaagttttttgatgcctatcacgatgttatgaaacaaggg 926
|||||||| |||||||||||| ||| |||||||||| | || || | ||||| |||||
Sbjct: 810 attaaggagacctatggacagcagtattttgatgccctttacaatatcatgaaggaaggg 869
Query: 927 ctgtctagttgtagcacaaacctgaacctggtcacggactgcatggaacacgctctgaca 986
|||| | ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 870 ctgttgaattgtagcacaaacctgaacctggtcactgactgcatggaacatgctctgaca 929
Query: 987 tctgtgcatccccgcactcggtactcagctggctgggatgctcaatttttcttcatccct 1046
|| |||||||| || ||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 930 tcggtgcatccgcgaactcgatattcagctggctgggatgctaaatttttcttcatccct 989
Query: 1047 ctgtcttatttac 1059
|| ||||||||||
Sbjct: 990 ctatcttatttac 1002
Score = 315 bits (159), Expect = 2e-84
Identities = 297/343 (86%)
Strand = Plus / Plus
Query: 168 atgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccgggaa 227
|||||||| |||||||| | | ||||||||||||||||||| || | ||||||||||||
Sbjct: 111 atgtggctctacctggcggccttcgtgggcctgtactaccttctgcactggtaccgggag 170
Query: 228 aggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgggc 287
|||||| |||| |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 171 aggcaggtggtgagccacctccaagacaagtatgtctttatcacgggctgtgactcgggc 230
Query: 288 tttgggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcatgt 347
||||||||||||||||| || |||||||||| | |||||||| || |||||||| |||
Sbjct: 231 tttgggaacctgctggccagacagctggatgcacgaggcttgagagtgctggctgcgtgt 290
Query: 348 ctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtg 407
||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 291 ctgacggagaagggggccgagcagctgaggggccagacgtctgacaggctggagacggtg 350
Query: 408 ctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagcgt 467
| |||| || ||||||| |||||||| ||||| || || |||||||||||||||| |
Sbjct: 351 accctggatgttaccaagatggagagcatcgctgcagctactcagtgggtgaaggagcat 410
Query: 468 gtcggggacagaggactctggggtctggtcaacaatgcaggca 510
|| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 411 gtgggggacagaggactctggggactggtgaacaatgcaggca 453
>gnl|UG|Bt#S14885387 732711 MARC 6BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=CB466997 /gi=29273382
/ug=Bt.16385 /len=690
Length = 690
Score = 280 bits (141), Expect = 1e-73
Identities = 228/257 (88%)
Strand = Plus / Plus
Query: 186 gtcctcgtgggcctgtactacctccttcgctggtaccgggaaaggcagatggttagccac 245
|||||| ||||||||||||||||||| ||||||||||| || |||||| |||| ||||||
Sbjct: 1 gtcctcttgggcctgtactacctcctgcgctggtaccgagagaggcaggtggtgagccac 60
Query: 246 cttggggataagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcg 305
|| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 ctccaggacaagtttgtcttcatcacgggctgtgactcgggctttgggaaccagctggcc 120
Query: 306 aggcagctggatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcc 365
||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 aggcagctggacctgcgaggcttgagggtcctggctgggtgtctgacggagcagggggcc 180
Query: 366 cagcagctgaggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaag 425
||||||||||||| ||||| |||||||||||| |||| ||| | ||||||| ||||||
Sbjct: 181 gagcagctgaggaaccagacatcagacaggctgcagacagtgattctggacgtcaccaag 240
Query: 426 acagagagcattgctgc 442
||||||||||| |||||
Sbjct: 241 acagagagcatcgctgc 257
>gnl|UG|Hs#S1727665 Homo sapiens microsomal NAD+-dependent retinol
dehydrogenase 4 (RODH-4), mRNA /cds=(853,1806)
/gb=NM_003708 /gi=21361104 /ug=Hs.134958 /len=2425
Length = 2425
Score = 272 bits (137), Expect = 3e-71
Identities = 293/345 (84%)
Strand = Plus / Plus
Query: 166 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 225
|||||||||| |||||||| || ||||||||||||||||||| || | |||||||||||
Sbjct: 851 ccatgtggctctacctggcggttttcgtgggcctgtactaccttctgcactggtaccggg 910
Query: 226 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 285
| |||||| || | |||||||| | ||||||||||| |||||||||||||||||||| |
Sbjct: 911 agaggcaggtgctgagccacctgagagataagtatgtgttcatcacgggctgtgactctg 970
Query: 286 gctttgggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcat 345
|||| ||||| |||||||| || |||||||||| | |||||| |||| ||||||||||
Sbjct: 971 gcttcgggaaactgctggccagacagctggatgcacgaggcttgcgggtgctggctgcat 1030
Query: 346 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 405
||||||||||| | || ||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 1031 gtctgacggagaaaggagccgagcagctgaggggccagacttcagacaggctggagacgg 1090
Query: 406 tgctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagc 465
|| | |||| || ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1091 tgaccctggatgttaccaagacagagagcgttgctgcagccgcccagtgggtgaaggagt 1150
Query: 466 gtgtcggggacagaggactctggggtctggtcaacaatgcaggca 510
| || | |||| |||||||||||| ||||| || ||||| ||||
Sbjct: 1151 gcgtgagagacaaaggactctggggcctggtgaataatgctggca 1195
Score = 48.1 bits (24), Expect = 8e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 996 ccccgcactcggtactcagctggctgggatgc 1027
||||| ||||| ||||||||||||||||||||
Sbjct: 1681 ccccgtactcgctactcagctggctgggatgc 1712
>gnl|UG|Mm#S10827633 Mus musculus retinol dehydrogenase similar
protein 2 (RDH-S2), mRNA /cds=(90,1046) /gb=NM_147222
/gi=27544936 /ug=Mm.222953 /len=1890
Length = 1890
Score = 262 bits (132), Expect = 3e-68
Identities = 219/248 (88%)
Strand = Plus / Plus
Query: 255 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctg 314
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 177 aagtatgtcttcatcacgggctgtgactctggctttgggaacctgctggccaggcagctg 236
Query: 315 gatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcccagcagctg 374
|| ||| ||| ||||||| ||||||||||||||||||||| |||| ||| || |||||
Sbjct: 237 gacaggagaggcatgagggtgctggctgcatgtctgacggagaagggagccgaggagctg 296
Query: 375 aggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagacagagagc 434
||||| |||| || |||||||||||||| ||| || |||| || ||||||||||||||
Sbjct: 297 aggaacaagacatctgacaggctggagacagtgatcctggatgtcaccaagacagagagt 356
Query: 435 attgctgcggccacccagtgggtgaaggagcgtgtcggggacagaggactctggggtctg 494
|||| || ||||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 357 attgtggcagccactcagtgggtgaaggagcgtgttgggaacagaggactctggggcctg 416
Query: 495 gtcaacaa 502
||||||||
Sbjct: 417 gtcaacaa 424
Score = 48.1 bits (24), Expect = 8e-04
Identities = 71/84 (84%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 963 gactgcatggaacacgctctgacatc-tgtgcatccccgcactcggtactcagctggctg 1021
||||||||||| ||||||||||| | ||| || || ||||| || ||||||||||||||
Sbjct: 888 gactgcatggagcacgctctgactgcctgt-caccctcgcacccgatactcagctggctg 946
Query: 1022 ggatgctcaatttttcttcatccc 1045
||||||| | | |||||||||||
Sbjct: 947 ggatgctaagctcttcttcatccc 970
>gnl|UG|Mm#S9679486 Mus musculus retinol dehydrogenase 1 (all trans)
(Rdh1), mRNA /cds=(130,1083) /gb=NM_080436 /gi=20147788
/ug=Mm.220973 /len=3867
Length = 3867
Score = 246 bits (124), Expect = 2e-63
Identities = 217/248 (87%)
Strand = Plus / Plus
Query: 255 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctg 314
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 217 aagtatgtcttcatcacgggctgtgactctggctttgggaacctgctggccagacagctg 276
Query: 315 gatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcccagcagctg 374
|| ||| ||| ||||||| |||||||||||||||||||| |||| ||| || |||||
Sbjct: 277 gacaggagaggcatgagggtattggctgcatgtctgacggagaagggagccgaggagctg 336
Query: 375 aggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagacagagagc 434
||||| |||| || |||||||||||||| ||| || |||| || ||||||||||||||
Sbjct: 337 aggaacaagacatctgacaggctggagacagtgatcctggatgtcaccaagacagagagt 396
Query: 435 attgctgcggccacccagtgggtgaaggagcgtgtcggggacagaggactctggggtctg 494
|||| || ||||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 397 attgtggcagccactcagtgggtgaaggagcgtgttgggaacagaggactctggggcctg 456
Query: 495 gtcaacaa 502
||||||||
Sbjct: 457 gtcaacaa 464
Score = 42.1 bits (21), Expect = 0.052
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 963 gactgcatggaacacgctctgacatctgtgcatccccgcactcggtactcagctggctgg 1022
||||||||||| ||||||||||| | || || |||||||| |||||||| ||||||
Sbjct: 925 gactgcatggagcacgctctgactgcccgccaccctcgcactcgatactcagcaggctgg 984
Query: 1023 gatgc 1027
|||||
Sbjct: 985 gatgc 989
>gnl|UG|Mm#S8539592 Mus musculus retinol dehydrogenase 7 (Rdh7),
mRNA /cds=(98,1048) /gb=NM_017473 /gi=8567341
/ug=Mm.6696 /len=1612
Length = 1612
Score = 246 bits (124), Expect = 2e-63
Identities = 223/256 (87%)
Strand = Plus / Plus
Query: 255 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctg 314
||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||
Sbjct: 185 aagtatgtcttcatcacgggctgtgactctggctttgggaaccttctggccagacagctg 244
Query: 315 gatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcccagcagctg 374
|| ||| ||| ||||||| || |||||||||||||||||| |||| || ||||||||
Sbjct: 245 gacaggagaggcatgagggtgctagctgcatgtctgacggagaagggagctgagcagctg 304
Query: 375 aggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagacagagagc 434
||||| |||| || |||||||||||||| ||| || |||| || ||||||||||||||
Sbjct: 305 aggaacaagacatctgacaggctggagacagtgatcctggatgtcaccaagacagagagt 364
Query: 435 attgctgcggccacccagtgggtgaaggagcgtgtcggggacagaggactctggggtctg 494
|||| || ||||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 365 attgtggcagccactcagtgggtgaaggagcgtgttgggaacagaggactctggggcctg 424
Query: 495 gtcaacaatgcaggca 510
||||||||||| ||||
Sbjct: 425 gtcaacaatgctggca 440
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1008 tactcagctggctgggatgc 1027
||||||||||||||||||||
Sbjct: 935 tactcagctggctgggatgc 954
Score = 38.2 bits (19), Expect = 0.81
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 963 gactgcatggaacacgctctgac 985
||||||||||| |||||||||||
Sbjct: 890 gactgcatggagcacgctctgac 912
>gnl|UG|Mm#S8082048 Mus musculus hydroxysteroid (17-beta)
dehydrogenase 9 (Hsd17b9), mRNA /cds=(194,1147)
/gb=NM_013786 /gi=23680951 /ug=Mm.26719 /len=1479
Length = 1479
Score = 242 bits (122), Expect = 3e-62
Identities = 221/254 (87%)
Strand = Plus / Plus
Query: 255 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctg 314
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 281 aagtatgtcttcatcacgggctgtgactctggctttgggaacctgctggccagacagctg 340
Query: 315 gatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcccagcagctg 374
|| ||| ||| ||||||| |||||||||||||||||||| |||| ||| || |||||
Sbjct: 341 gacaggagaggcatgagggtattggctgcatgtctgacggagaagggagccgaggagctg 400
Query: 375 aggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagacagagagc 434
||||| |||| || |||||||||||||| ||| || |||| || ||||||||||||||
Sbjct: 401 aggaacaagacatctgacaggctggagacagtgatcctggatgtcaccaagacagagagt 460
Query: 435 attgctgcggccacccagtgggtgaaggagcgtgtcggggacagaggactctggggtctg 494
|||| || ||||| |||||||||||||||||||| || |||||||||||||||||| ||
Sbjct: 461 attgtggcagccactcagtgggtgaaggagcgtgttggagacagaggactctggggtttg 520
Query: 495 gtcaacaatgcagg 508
|| || ||||||||
Sbjct: 521 gttaataatgcagg 534
Score = 107 bits (54), Expect = 1e-21
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 936 tgtagcacaaacctgaacctggtcacggactgcatggaacacgctctgacatctgtgcat 995
||||||| ||||||| ||| ||||||||||||||||| ||||| ||||| || ||||
Sbjct: 962 tgtagcaggaacctgagcctagtcacggactgcatggagcacgccctgacctccacgcat 1021
Query: 996 ccccgcactcggtactcagctggctgggatgctcaatttttcttcatccctctgtcttat 1055
|| ||||| |||||||| |||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 1022 cctcgcacccggtactcggctggctgggatgccaagtttttcttcatccctctatcttat 1081
Query: 1056 tt 1057
||
Sbjct: 1082 tt 1083
Score = 97.6 bits (49), Expect = 1e-18
Identities = 175/217 (80%)
Strand = Plus / Plus
Query: 571 aagtgaacctcattggtgtgacagaggtgaccttgagcatgcttcccttggtgaagaaag 630
||||||||||||||||| |||| ||||||| | ||||||||| | |||| ||||| |
Sbjct: 597 aagtgaacctcattggtttgacccaggtgactataagcatgcttttcctggtaaagaagg 656
Query: 631 cacaggggagaattgtcaatgtctccagcattctgggaagagttgctttctttggagcag 690
| | ||| || || |||||||||||||| | ||||||||||||| || ||||||| |
Sbjct: 657 ctcggggcaggatcgtcaatgtctccagtgctttgggaagagttgcattgtttggaggat 716
Query: 691 tctactctagctccaagcatggagtggaagccttttcagatgtcctgagatgtgagcttc 750
||||| | |||||||| |||| || || || ||||||||||| || || |||| |||
Sbjct: 717 tctacagttgctccaagtatggggttgaggcattttcagatgtgctaaggcatgaggttc 776
Query: 751 agcattttggggtgaaagtcagcatagttgaacctgg 787
| |||| |||||||||||||||||| ||||||||||
Sbjct: 777 aagatttcggggtgaaagtcagcataattgaacctgg 813
>gnl|UG|Mm#S9897514 Mus musculus expressed sequence AI121090
(AI121090), mRNA /cds=(81,1034) /gb=NM_153133
/gi=23680944 /ug=Mm.221173 /len=2738
Length = 2738
Score = 230 bits (116), Expect = 1e-58
Identities = 215/248 (86%)
Strand = Plus / Plus
Query: 255 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctg 314
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 168 aagtatgtcttcatcacgggctgtgactctggctttgggaacctgctggccagacagctg 227
Query: 315 gatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcccagcagctg 374
|| ||| ||| |||| || |||||||||||||||||||| |||| ||| || |||||
Sbjct: 228 gacaggagaggcatgagagtgttggctgcatgtctgacggagaagggagccgaggagctg 287
Query: 375 aggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagacagagagc 434
||||| |||| || |||||||||||||| ||| || |||| || ||||||||||||||
Sbjct: 288 aggaacaagacatctgacaggctggagacagtgatcctggatgtcaccaagacagagagt 347
Query: 435 attgctgcggccacccagtgggtgaaggagcgtgtcggggacagaggactctggggtctg 494
|||| | ||||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 348 attgtgacagccactcagtgggtgaaggagcgtgttgggaacagaggactctggggcctg 407
Query: 495 gtcaacaa 502
||||||||
Sbjct: 408 gtcaacaa 415
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1008 tactcagctggctgggatgct 1028
|||||||||||||||||||||
Sbjct: 921 tactcagctggctgggatgct 941
>gnl|UG|Mm#S8039402 Mus musculus retinol dehydrogenase 6 (Rdh6),
mRNA /cds=(45,998) /gb=NM_009040 /gi=6677696
/ug=Mm.100276 /len=3282
Length = 3282
Score = 224 bits (113), Expect = 6e-57
Identities = 212/245 (86%)
Strand = Plus / Plus
Query: 258 tatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctggat 317
|||||||||||||||||||||||||| |||||||||| ||||||||| || ||||||||
Sbjct: 135 tatgtcttcatcacgggctgtgactctggctttgggaccctgctggccagacagctggac 194
Query: 318 gtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcccagcagctgagg 377
||| ||| ||||||| ||||||||||||||||||||| |||| ||| || ||||||||
Sbjct: 195 aggagaggcatgagggtgctggctgcatgtctgacggagaagggagccgaggagctgagg 254
Query: 378 aagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagacagagagcatt 437
|| |||| || |||||||||||||| ||| || |||| || |||||||||||||| |||
Sbjct: 255 aacaagacatctgacaggctggagacagtgatcctggatgtcaccaagacagagagtatt 314
Query: 438 gctgcggccacccagtgggtgaaggagcgtgtcggggacagaggactctggggtctggtc 497
| | ||||| |||||||||||||||| ||| ||| |||||||||||||||| ||||||
Sbjct: 315 gtgacagccactcagtgggtgaaggagcatgttgggaacagaggactctggggcctggtc 374
Query: 498 aacaa 502
|||||
Sbjct: 375 aacaa 379
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1008 tactcagctggctgggatgct 1028
|||||||||||||||||||||
Sbjct: 885 tactcagctggctgggatgct 905
>gnl|UG|Mm#S9733005 Mus musculus cis-retinol/3alpha hydroxysterol
short-chain dehydrogenase-like (CRAD-L), mRNA
/cds=(77,1033) /gb=NM_145424 /gi=21703845 /ug=Mm.214923
/len=1316
Length = 1316
Score = 198 bits (100), Expect = 4e-49
Identities = 211/248 (85%)
Strand = Plus / Plus
Query: 255 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctg 314
||||||||||||||||| ||||||| ||| |||||||||||||||||||| || ||||||
Sbjct: 164 aagtatgtcttcatcacaggctgtggctctggctttgggaacctgctggccagacagctg 223
Query: 315 gatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggcccagcagctg 374
|| ||| ||| |||| || |||||||||||| || |||| |||| ||| || |||||
Sbjct: 224 gacaggagaggcatgagagtgttggctgcatgtcggaaggaggagggagccgaggagctg 283
Query: 375 aggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagacagagagc 434
|||| |||| ||||| ||||||||||| ||| || |||| || ||||||||||||||
Sbjct: 284 aggagaaagacatcagaaaggctggagacagtgatcctggatgtcaccaagacagagagt 343
Query: 435 attgctgcggccacccagtgggtgaaggagcgtgtcggggacagaggactctggggtctg 494
|||| || ||||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 344 attgtggcagccactcagtgggtgaaggagcgtgttgggaacagaggactctggggcctg 403
Query: 495 gtcaacaa 502
||||||||
Sbjct: 404 gtcaacaa 411
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1008 tactcagctggctgggatgct 1028
|||||||||||||||||||||
Sbjct: 920 tactcagctggctgggatgct 940
Score = 38.2 bits (19), Expect = 0.81
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 963 gactgcatggaacacgctctgac 985
||||||||||| |||||||||||
Sbjct: 875 gactgcatggagcacgctctgac 897
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 168747
Number of Sequences: 230285
Number of extensions: 168747
Number of successful extensions: 12832
Number of sequences better than 10.0: 35
length of query: 1059
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1040
effective length of database: 237,601,478
effective search space: 247105537120
effective search space used: 247105537120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)