Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-000169


Query

>20030531C-000169 (20030531C-000169) 20030531C-000169
GGCTCATTCG CGCGTTAGAA GGCTCAGGCC GTTGTGCTGT GCTGTCTTCC
CGCCTGCGCC AGGGACCTGC CCAACTCAGT GGTGACCATG GCATCAGACG
AGGGCAAACT TTTCGTTGGA GGGCTGAGCT TTGACACCAA TGAGCAGTCG
CTGGAGCAGG TCTTCTCAAA ATATGGGCAG ATCTCAGAAG TGGTAGTAGT
GAAGGACAGG GAGACCCAGC GATCGAGGGG CTTTGGGTTT GTCACCTTTG
AGAACATTGA TGACGCCAAG GACGCTATGA TGGCCATGAA CGGGAAGTCT
GTGGATGGGC GGCAGATCCG GGTTGACCAG GCCGGCAAGT CATCTGATAA
CCGATCCCGT GGGTACCGAG GTGGCTCCTC GGGGGGCCGG GGCTTCTTCC
GTGGGGGCCG AGGCCGGGGC CGTGGGTTCT CCAGAGGAGG AGGGGATCGA
GGCTATGGTG GTAGCCGGTT CGAGTCCAGG AGTGGGGGCT ATGGCGGCTC
CAGGGACTAC TACAGCAGCC GGAGTCAGGG TGGCGGCTAT GGTGACCGGA
GCTCAGGCGG GTCCTACAGA GACAGCTACG ACAGTTACGC TACACACAAC
GAGTAAAAAT CCTGCTCAAG ATCGTCCTTC CAATGGCTGT ATATTTAAAG
ATTTTGGGAG CTCCGCTGAA TCGTTAATGT GTAGTGAATC CACCTCCTTG
TACCCACTTT TGTAGTCTTA TCAGTTCCTA TCTTGTCAAA CACAGCCTGA
CTGCTTCTGA CCCCAGATGG CCTCATTATT ACACTTTTCT TTTTAAAGAA
GTGCCATCTG TTTTTGAGGA TTTTGAACAT GTTTTGCAAA GCACTTCAGG
TTTTACTTTT TATCGTGAGC CATGAGCTTT TTAAAAAAAT CATTGAGGGT
TGCGAGAGTT TGAGTTTGGG GTTGTGTTGC CTTTTTTCTC TTTTTCGTGG
GGGTCGGCCC C

Search to UniGene2 database

Query= 20030531C-000169 (20030531C-000169) 20030531C-000169
         (961 letters)

Database: UniGene(Bt+Hs+Ssc+Mm)
           230,285 sequences; 241,976,893 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gnl|UG|Ssc#S6075197 UNL-P-FN-db-c-06-0-UNL.s1 UNL-P-FN Sus scro...  1360  0.0
Alignment   gnl|UG|Hs#S1726481 Homo sapiens cold inducible RNA binding prot...   864  0.0
Alignment   gnl|UG|Mm#S8041106 Mus musculus cold inducible RNA binding prot...   555  e-156
Alignment   gnl|UG|Hs#S1654379 au88b09.x1 Schneider fetal brain 00004 Homo ...    48  8e-04
Alignment   gnl|UG|Mm#S10862952 Mus musculus adult male corpora quadrigemin...    48  8e-04
Alignment   gnl|UG|Mm#S8041736 Mus musculus heterogeneous nuclear ribonucle...    42  0.047
Alignment   gnl|UG|Hs#S4617015 Homo sapiens cDNA FLJ37104 fis, clone BRACE2...    40  0.18
Alignment   gnl|UG|Hs#S3602281 Homo sapiens heterogeneous nuclear ribonucle...    40  0.18
Alignment   gnl|UG|Hs#S4356380 UI-1-BB1p-axr-c-03-0-UI.s1 NCI_CGAP_Pl6 Homo...    40  0.18
Alignment   gnl|UG|Hs#S4297113 UI-CF-DU1-adl-n-19-0-UI.s1 UI-CF-DU1 Homo sa...    40  0.18


>gnl|UG|Ssc#S6075197 UNL-P-FN-db-c-06-0-UNL.s1 UNL-P-FN Sus scrofa
           cDNA clone UNL-P-FN-db-c-06-0-UNL 3', mRNA sequence
           /clone=UNL-P-FN-db-c-06-0-UNL /clone_end=3' /gb=BI184942
           /gi=14659351 /ug=Ssc.2163 /len=797
          Length = 797

 Score = 1360 bits (686), Expect = 0.0
 Identities = 738/748 (98%), Gaps = 6/748 (0%)
 Strand = Plus / Plus


Query: 16  tagaaggctcaggccgttgtgctgtgctgtcttcccgcctgcgccagggacctgcccaac 75
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taganggctcaggccgttgtgctgtgctgtcttcccgcctgcgccagggacctgcccaac 68


Query: 76  tcagtggtgaccatggcatcagacgagggcaaacttttcgttggagggctgagctttgac 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  tcagtggtgaccatggcatcagacgagggcaaacttttcgttggagggctgagctttgac 128


Query: 136 accaatgagcagtcgctggagcaggtcttctcaaaatatgggcagatctcagaagtggta 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 accaatgagcagtcgctggagcaggtcttctcaaaatatgggcagatctcagaagtggta 188


Query: 196 gtagtgaaggacagggagacccagcgatcgaggggctttgggtttgtcacctttgagaac 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gtagtgaaggacagggagacccagcgatcgaggggctttgggtttgtcacctttgagaac 248


Query: 256 attgatgacgccaaggacgctatgatggccatgaacgggaagtctgtggatgggcggcag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attgatgacgccaaggacgctatgatggccatgaacgggaagtctgtggatgggcggcag 308


Query: 316 atccgggttgaccaggccggcaagtcatctgataaccgatcccgtgggtaccgaggtggc 375
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atccgggttgaccaggccgggaagtcatctgataaccgatcccgtgggtaccgaggtggc 368


Query: 376 tcctcggggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccaga 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcctcggggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccaga 428


Query: 436 ggaggaggggatcgaggctatggtggtagccggttcgagtccaggagtgggggctatggc 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaggaggggatcgaggctatggtggtagccggttcgagtccaggagtgggggctatggc 488


Query: 496 ggctccagggactactacagcagccggagtcagggtggcggctatggtgaccggagctca 555
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 489 ggctccagggactactacagcagccggagtcagggtggcagctatggtgaccggagctca 548


Query: 556 ggcgggtcctacagagacagctacgacagttacgctacacacaacgagtaaaaatcctgc 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggcgggtcctacagagacagctacgacagttacgctacacacaacgagtaaaaatcctgc 608


Query: 616 tcaagatcgtccttccaatggctgtatatttaaagattttgggagctccgctgaatcgtt 675
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 609 tcaagatcgtccttccaatggctgtatatttaaagattttgggagct-cgctgaatcgtt 667


Query: 676 aatgtgtagtgaatccacctccttgtacccacttttgtagtcttatcagttcctatcttg 735
           |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 668 aatgtgtagtgaat-cacctccttgta-ccacttttgtagtcttatcagtt-ctatcttg 724


Query: 736 tcaaacacagcctgactgcttctgaccc 763
           || || |||| |||||||||||||||||
Sbjct: 725 tc-aanacag-ctgactgcttctgaccc 750



>gnl|UG|Hs#S1726481 Homo sapiens cold inducible RNA binding protein
           (CIRBP), mRNA /cds=(81,599) /gb=NM_001280 /gi=4502846
           /ug=Hs.119475 /len=1322
          Length = 1322

 Score =  864 bits (436), Expect = 0.0
 Identities = 706/792 (89%), Gaps = 8/792 (1%)
 Strand = Plus / Plus


Query: 20  aggctcaggccgttgtgctgtgctgtcttcccgcctgcgccagggacctgcccaactcag 79
           |||||| || ||||||| || ||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 13  aggctcgggtcgttgtggtgcgctgtcttcccgcttgcgtcagggacctgcccgactcag 72


Query: 80  tggtgaccatggcatcagacgagggcaaacttttcgttggagggctgagctttgacacca 139
           |||   ||||||||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 73  tggccgccatggcatcagatgaaggcaaactttttgttggagggctgagttttgacacca 132


Query: 140 atgagcagtcgctggagcaggtcttctcaaaatatgggcagatctcagaagtggtagtag 199
           ||||||||||||||||||||||||||||||| || || |||||||| |||||||| || |
Sbjct: 133 atgagcagtcgctggagcaggtcttctcaaagtacggacagatctctgaagtggtggttg 192


Query: 200 tgaaggacagggagacccagcgatcgaggggctttgggtttgtcacctttgagaacattg 259
           |||| ||||||||||||||| ||||  |||| ||||||||||||||||||||||||||||
Sbjct: 193 tgaaagacagggagacccagagatctcggggatttgggtttgtcacctttgagaacattg 252


Query: 260 atgacgccaaggacgctatgatggccatgaacgggaagtctgtggatgggcggcagatcc 319
           | ||||| ||||| || |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 253 acgacgctaaggatgccatgatggccatgaatgggaagtctgtagatggacggcagatcc 312


Query: 320 gggttgaccaggccggcaagtcatctgataaccgatcccgtgggtaccgaggtggctcct 379
           | || |||||||| |||||||| || || |||||||||||||||||||| ||||||||
Sbjct: 313 gagtagaccaggcaggcaagtcgtcagacaaccgatcccgtgggtaccgtggtggctctg 372


Query: 380 cggggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccagaggag 439
           | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 373 ccgggggccggggcttcttccgtgggggccgaggacggggccgtgggttctctagaggag 432


Query: 440 gaggggatcgaggctatggtggtagccggttcgagtccaggagtgggggctatggcggct 499
           ||||||| ||||||||||| || | ||||||||||||||||||||||||||| || ||||
Sbjct: 433 gaggggaccgaggctatggggggaaccggttcgagtccaggagtgggggctacggaggct 492


Query: 500 ccagggactactacagcagccggagtcagggtggcggctatggtgaccggagctcaggcg 559
           |||| |||||||| ||||||||||||||| |||| |||||  ||||||||||||| ||||
Sbjct: 493 ccagagactactatagcagccggagtcagagtggtggctacagtgaccggagctcgggcg 552


Query: 560 ggtcctacagagacagctacgacagttacgctacacacaacgagtaaaaa----tcctgc 615
           |||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||
Sbjct: 553 ggtcctacagagacagttacgacagttacgctacacacaacgagtaaaaacccttcctgc 612


Query: 616 tcaagatcgtccttccaatggctgtatatttaaagattttgggagctccgctgaatcgtt 675
           ||||||||||||||||||||||||| | |||||||||| |||||||| ||||||| ||||
Sbjct: 613 tcaagatcgtccttccaatggctgtgtgtttaaagattgtgggagcttcgctgaa-cgtt 671


Query: 676 aatgtgtagtgaatccacctccttgta--cccacttttgtagtcttatcagttcctatct 733
           |||||||||| ||| ||||||||||||  |||||||| |||||| | || ||||  ||||
Sbjct: 672 aatgtgtagtaaatgcacctccttgtattcccactttcgtagtcatttcggttctgatct 731


Query: 734 tgtcaaacacagcctgactgcttctgac-cccagatggcctcattattacacttttcttt 792
           |||||||| ||||||||| ||||||||| ||  ||||||||| ||| || ||||||||||
Sbjct: 732 tgtcaaacccagcctgaccgcttctgacgccgggatggcctcgttactagacttttcttt 791


Query: 793 ttaaagaagtgc 804
           |||| |||||||
Sbjct: 792 ttaaggaagtgc 803



>gnl|UG|Mm#S8041106 Mus musculus cold inducible RNA binding protein
           (Cirbp), mRNA /cds=(83,601) /gb=NM_007705 /gi=6680945
           /ug=Mm.17898 /len=1256
          Length = 1256

 Score =  555 bits (280), Expect = e-156
 Identities = 496/568 (87%)
 Strand = Plus / Plus


Query: 41  gctgtcttcccgcctgcgccagggacctgcccaactcagtggtgaccatggcatcagacg 100
           |||||||||||||  ||| ||||||||||||| |||||| ||   ||||||||||||| |
Sbjct: 36  gctgtcttcccgctcgcgtcagggacctgcccgactcagcggctgccatggcatcagatg 95


Query: 101 agggcaaacttttcgttggagggctgagctttgacaccaatgagcagtcgctggagcagg 160
           | ||||| |||||||| ||||| || ||||| |||||||| |||||| ||||||||||||
Sbjct: 96  aaggcaagcttttcgtgggaggactcagcttcgacaccaacgagcaggcgctggagcagg 155


Query: 161 tcttctcaaaatatgggcagatctcagaagtggtagtagtgaaggacagggagacccagc 220
           ||||||| || |||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct: 156 tcttctccaagtatgggcagatctccgaagtggtggtggtaaaggacagggagacccagc 215


Query: 221 gatcgaggggctttgggtttgtcacctttgagaacattgatgacgccaaggacgctatga 280
           ||||  | ||||||||||||||||||||||| || || |||||||| |||||||| ||||
Sbjct: 216 gatcccgaggctttgggtttgtcacctttgaaaatatcgatgacgctaaggacgccatga 275


Query: 281 tggccatgaacgggaagtctgtggatgggcggcagatccgggttgaccaggccggcaagt 340
           |||| ||||| |||||||||||||| |||||||||||| | ||||||||||| |||||||
Sbjct: 276 tggctatgaatgggaagtctgtggacgggcggcagatcagagttgaccaggctggcaagt 335


Query: 341 catctgataaccgatcccgtgggtaccgaggtggctcctcggggggccggggcttcttcc 400
           | ||||| ||||| ||||| || ||||| ||||||||  | || ||||||||||| ||||
Sbjct: 336 cttctgacaaccggtcccgaggataccggggtggctctgctggaggccggggctttttcc 395


Query: 401 gtgggggccgaggccggggccgtgggttctccagaggaggaggggatcgaggctatggtg 460
           ||||||| ||| |||||||||| |||||||||||||||||||| || || |||||||| |
Sbjct: 396 gtgggggacgaagccggggccgagggttctccagaggaggaggagaccggggctatggag 455


Query: 461 gtagccggttcgagtccaggagtgggggctatggcggctccagggactactacagcagcc 520
           || |||| || |||||| |||||||||| ||||| |||||||| ||||||||   |||||
Sbjct: 456 gtggccgctttgagtcccggagtgggggttatggaggctccagagactactatgccagcc 515


Query: 521 ggagtcagggtggcggctatggtgaccggagctcaggcgggtcctacagagacagctacg 580
           |||||||||||||| |||||||| | |||||||| || |||||||||||||||||||| |
Sbjct: 516 ggagtcagggtggcagctatggttatcggagctcgggagggtcctacagagacagctatg 575


Query: 581 acagttacgctacacacaacgagtaaaa 608
           ||||||| ||||||||||||||||||||
Sbjct: 576 acagttatgctacacacaacgagtaaaa 603


 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 39/44 (88%)
 Strand = Plus / Plus


Query: 831 gttttgcaaagcacttcaggttttactttttatcgtgagccatg 874
           |||||| |||||||||||| ||||||| |||| | |||||||||
Sbjct: 806 gttttggaaagcacttcagattttactgtttaccatgagccatg 849


 Score = 36.2 bits (18), Expect = 2.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 696 ccttgtacccacttttgtagtc 717
           |||||| |||||||||||||||
Sbjct: 680 ccttgttcccacttttgtagtc 701



>gnl|UG|Hs#S1654379 au88b09.x1 Schneider fetal brain 00004 Homo
           sapiens cDNA clone IMAGE:2783321 3' similar to
           SW:CIRP_HUMAN Q14011 COLD-INDUCIBLE RNA-BINDING PROTEIN
           ;, mRNA sequence /clone=IMAGE:2783321 /clone_end=3'
           /gb=AW157370 /gi=6228771 /ug=Hs.248412 /len=452
          Length = 452

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 54/64 (84%)
 Strand = Plus / Minus


Query: 382 gggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccagaggagga 441
           ||||||||||| || |||| |||||||| |||  ||||||||||||| |  | |||||||
Sbjct: 380 gggggccggggttttttccttgggggccaaggaaggggccgtgggttttttaaaggagga 321


Query: 442 gggg 445
           ||||
Sbjct: 320 gggg 317



>gnl|UG|Mm#S10862952 Mus musculus adult male corpora quadrigemina
            cDNA, RIKEN full-length enriched library,
            clone:B230345L12 product:glutamate receptor, ionotropic,
            AMPA3 (alpha 3), full insert sequence. /gb=AK046158
            /gi=26091355 /ug=Mm.234688 /len=2768
          Length = 2768

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 24/24 (100%)
 Strand = Plus / Minus


Query: 709  tttgtagtcttatcagttcctatc 732
            ||||||||||||||||||||||||
Sbjct: 1917 tttgtagtcttatcagttcctatc 1894



>gnl|UG|Mm#S8041736 Mus musculus heterogeneous nuclear
           ribonucleoprotein A1 (Hnrpa1), mRNA /cds=(25,987)
           /gb=NM_010447 /gi=6754219 /ug=Mm.27927 /len=1702
          Length = 1702

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 24/25 (96%)
 Strand = Plus / Plus


Query: 221 gatcgaggggctttgggtttgtcac 245
           |||| ||||||||||||||||||||
Sbjct: 182 gatccaggggctttgggtttgtcac 206



>gnl|UG|Hs#S4617015 Homo sapiens cDNA FLJ37104 fis, clone
            BRACE2019371, highly similar to HETEROGENEOUS NUCLEAR
            RIBONUCLEOPROTEIN A1. /gb=AK094423 /gi=21753481
            /ug=Hs.446380 /len=2115
          Length = 2115

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 226  aggggctttgggtttgtcac 245
            ||||||||||||||||||||
Sbjct: 986  aggggctttgggtttgtcac 1005



>gnl|UG|Hs#S3602281 Homo sapiens heterogeneous nuclear
           ribonucleoprotein A1 (HNRPA1), transcript variant 2,
           mRNA /cds=(105,1223) /gb=NM_031157 /gi=14043069
           /ug=Hs.376844 /len=1925
          Length = 1925

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 226 aggggctttgggtttgtcac 245
           ||||||||||||||||||||
Sbjct: 267 aggggctttgggtttgtcac 286



>gnl|UG|Hs#S4356380 UI-1-BB1p-axr-c-03-0-UI.s1 NCI_CGAP_Pl6 Homo
           sapiens cDNA clone UI-1-BB1p-axr-c-03-0-UI 3', mRNA
           sequence /clone=UI-1-BB1p-axr-c-03-0-UI /clone_end=3'
           /gb=BQ022626 /gi=19757905 /ug=Hs.364853 /len=724
          Length = 724

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 226 aggggctttgggtttgtcac 245
           ||||||||||||||||||||
Sbjct: 528 aggggctttgggtttgtcac 547



>gnl|UG|Hs#S4297113 UI-CF-DU1-adl-n-19-0-UI.s1 UI-CF-DU1 Homo
           sapiens cDNA clone UI-CF-DU1-adl-n-19-0-UI 3', mRNA
           sequence /clone=UI-CF-DU1-adl-n-19-0-UI /clone_end=3'
           /gb=BM979153 /gi=19599311 /ug=Hs.363419 /len=699
          Length = 699

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 23/24 (95%)
 Strand = Plus / Minus


Query: 709 tttgtagtcttatcagttcctatc 732
           ||||||||||||| ||||||||||
Sbjct: 294 tttgtagtcttatgagttcctatc 271


  Database: UniGene(Bt+Hs+Ssc+Mm)
    Posted date:  May 6, 2003  5:18 PM
  Number of letters in database: 241,976,893
  Number of sequences in database:  230,285

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144343
Number of Sequences: 230285
Number of extensions: 144343
Number of successful extensions: 11999
Number of sequences better than 10.0: 42
length of query: 961
length of database: 241,976,893
effective HSP length: 19
effective length of query: 942
effective length of database: 237,601,478
effective search space: 223820592276
effective search space used: 223820592276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)