>20030531C-000169 (20030531C-000169) 20030531C-000169 GGCTCATTCG CGCGTTAGAA GGCTCAGGCC GTTGTGCTGT GCTGTCTTCC CGCCTGCGCC AGGGACCTGC CCAACTCAGT GGTGACCATG GCATCAGACG AGGGCAAACT TTTCGTTGGA GGGCTGAGCT TTGACACCAA TGAGCAGTCG CTGGAGCAGG TCTTCTCAAA ATATGGGCAG ATCTCAGAAG TGGTAGTAGT GAAGGACAGG GAGACCCAGC GATCGAGGGG CTTTGGGTTT GTCACCTTTG AGAACATTGA TGACGCCAAG GACGCTATGA TGGCCATGAA CGGGAAGTCT GTGGATGGGC GGCAGATCCG GGTTGACCAG GCCGGCAAGT CATCTGATAA CCGATCCCGT GGGTACCGAG GTGGCTCCTC GGGGGGCCGG GGCTTCTTCC GTGGGGGCCG AGGCCGGGGC CGTGGGTTCT CCAGAGGAGG AGGGGATCGA GGCTATGGTG GTAGCCGGTT CGAGTCCAGG AGTGGGGGCT ATGGCGGCTC CAGGGACTAC TACAGCAGCC GGAGTCAGGG TGGCGGCTAT GGTGACCGGA GCTCAGGCGG GTCCTACAGA GACAGCTACG ACAGTTACGC TACACACAAC GAGTAAAAAT CCTGCTCAAG ATCGTCCTTC CAATGGCTGT ATATTTAAAG ATTTTGGGAG CTCCGCTGAA TCGTTAATGT GTAGTGAATC CACCTCCTTG TACCCACTTT TGTAGTCTTA TCAGTTCCTA TCTTGTCAAA CACAGCCTGA CTGCTTCTGA CCCCAGATGG CCTCATTATT ACACTTTTCT TTTTAAAGAA GTGCCATCTG TTTTTGAGGA TTTTGAACAT GTTTTGCAAA GCACTTCAGG TTTTACTTTT TATCGTGAGC CATGAGCTTT TTAAAAAAAT CATTGAGGGT TGCGAGAGTT TGAGTTTGGG GTTGTGTTGC CTTTTTTCTC TTTTTCGTGG GGGTCGGCCC C
Query= 20030531C-000169 (20030531C-000169) 20030531C-000169 (961 letters) Database: UniGene(Bt+Hs+Ssc+Mm) 230,285 sequences; 241,976,893 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gnl|UG|Ssc#S6075197 UNL-P-FN-db-c-06-0-UNL.s1 UNL-P-FN Sus scro... 1360 0.0 Alignment gnl|UG|Hs#S1726481 Homo sapiens cold inducible RNA binding prot... 864 0.0 Alignment gnl|UG|Mm#S8041106 Mus musculus cold inducible RNA binding prot... 555 e-156 Alignment gnl|UG|Hs#S1654379 au88b09.x1 Schneider fetal brain 00004 Homo ... 48 8e-04 Alignment gnl|UG|Mm#S10862952 Mus musculus adult male corpora quadrigemin... 48 8e-04 Alignment gnl|UG|Mm#S8041736 Mus musculus heterogeneous nuclear ribonucle... 42 0.047 Alignment gnl|UG|Hs#S4617015 Homo sapiens cDNA FLJ37104 fis, clone BRACE2... 40 0.18 Alignment gnl|UG|Hs#S3602281 Homo sapiens heterogeneous nuclear ribonucle... 40 0.18 Alignment gnl|UG|Hs#S4356380 UI-1-BB1p-axr-c-03-0-UI.s1 NCI_CGAP_Pl6 Homo... 40 0.18 Alignment gnl|UG|Hs#S4297113 UI-CF-DU1-adl-n-19-0-UI.s1 UI-CF-DU1 Homo sa... 40 0.18 >gnl|UG|Ssc#S6075197 UNL-P-FN-db-c-06-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-db-c-06-0-UNL 3', mRNA sequence /clone=UNL-P-FN-db-c-06-0-UNL /clone_end=3' /gb=BI184942 /gi=14659351 /ug=Ssc.2163 /len=797 Length = 797 Score = 1360 bits (686), Expect = 0.0 Identities = 738/748 (98%), Gaps = 6/748 (0%) Strand = Plus / Plus Query: 16 tagaaggctcaggccgttgtgctgtgctgtcttcccgcctgcgccagggacctgcccaac 75 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 taganggctcaggccgttgtgctgtgctgtcttcccgcctgcgccagggacctgcccaac 68 Query: 76 tcagtggtgaccatggcatcagacgagggcaaacttttcgttggagggctgagctttgac 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 tcagtggtgaccatggcatcagacgagggcaaacttttcgttggagggctgagctttgac 128 Query: 136 accaatgagcagtcgctggagcaggtcttctcaaaatatgggcagatctcagaagtggta 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 accaatgagcagtcgctggagcaggtcttctcaaaatatgggcagatctcagaagtggta 188 Query: 196 gtagtgaaggacagggagacccagcgatcgaggggctttgggtttgtcacctttgagaac 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 gtagtgaaggacagggagacccagcgatcgaggggctttgggtttgtcacctttgagaac 248 Query: 256 attgatgacgccaaggacgctatgatggccatgaacgggaagtctgtggatgggcggcag 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 attgatgacgccaaggacgctatgatggccatgaacgggaagtctgtggatgggcggcag 308 Query: 316 atccgggttgaccaggccggcaagtcatctgataaccgatcccgtgggtaccgaggtggc 375 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 309 atccgggttgaccaggccgggaagtcatctgataaccgatcccgtgggtaccgaggtggc 368 Query: 376 tcctcggggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccaga 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 tcctcggggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccaga 428 Query: 436 ggaggaggggatcgaggctatggtggtagccggttcgagtccaggagtgggggctatggc 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 ggaggaggggatcgaggctatggtggtagccggttcgagtccaggagtgggggctatggc 488 Query: 496 ggctccagggactactacagcagccggagtcagggtggcggctatggtgaccggagctca 555 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 489 ggctccagggactactacagcagccggagtcagggtggcagctatggtgaccggagctca 548 Query: 556 ggcgggtcctacagagacagctacgacagttacgctacacacaacgagtaaaaatcctgc 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 549 ggcgggtcctacagagacagctacgacagttacgctacacacaacgagtaaaaatcctgc 608 Query: 616 tcaagatcgtccttccaatggctgtatatttaaagattttgggagctccgctgaatcgtt 675 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 609 tcaagatcgtccttccaatggctgtatatttaaagattttgggagct-cgctgaatcgtt 667 Query: 676 aatgtgtagtgaatccacctccttgtacccacttttgtagtcttatcagttcctatcttg 735 |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 668 aatgtgtagtgaat-cacctccttgta-ccacttttgtagtcttatcagtt-ctatcttg 724 Query: 736 tcaaacacagcctgactgcttctgaccc 763 || || |||| ||||||||||||||||| Sbjct: 725 tc-aanacag-ctgactgcttctgaccc 750 >gnl|UG|Hs#S1726481 Homo sapiens cold inducible RNA binding protein (CIRBP), mRNA /cds=(81,599) /gb=NM_001280 /gi=4502846 /ug=Hs.119475 /len=1322 Length = 1322 Score = 864 bits (436), Expect = 0.0 Identities = 706/792 (89%), Gaps = 8/792 (1%) Strand = Plus / Plus Query: 20 aggctcaggccgttgtgctgtgctgtcttcccgcctgcgccagggacctgcccaactcag 79 |||||| || ||||||| || ||||||||||||| |||| ||||||||||||| |||||| Sbjct: 13 aggctcgggtcgttgtggtgcgctgtcttcccgcttgcgtcagggacctgcccgactcag 72 Query: 80 tggtgaccatggcatcagacgagggcaaacttttcgttggagggctgagctttgacacca 139 ||| ||||||||||||| || ||||||||||| |||||||||||||| |||||||||| Sbjct: 73 tggccgccatggcatcagatgaaggcaaactttttgttggagggctgagttttgacacca 132 Query: 140 atgagcagtcgctggagcaggtcttctcaaaatatgggcagatctcagaagtggtagtag 199 ||||||||||||||||||||||||||||||| || || |||||||| |||||||| || | Sbjct: 133 atgagcagtcgctggagcaggtcttctcaaagtacggacagatctctgaagtggtggttg 192 Query: 200 tgaaggacagggagacccagcgatcgaggggctttgggtttgtcacctttgagaacattg 259 |||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||| Sbjct: 193 tgaaagacagggagacccagagatctcggggatttgggtttgtcacctttgagaacattg 252 Query: 260 atgacgccaaggacgctatgatggccatgaacgggaagtctgtggatgggcggcagatcc 319 | ||||| ||||| || |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 253 acgacgctaaggatgccatgatggccatgaatgggaagtctgtagatggacggcagatcc 312 Query: 320 gggttgaccaggccggcaagtcatctgataaccgatcccgtgggtaccgaggtggctcct 379 | || |||||||| |||||||| || || |||||||||||||||||||| |||||||| Sbjct: 313 gagtagaccaggcaggcaagtcgtcagacaaccgatcccgtgggtaccgtggtggctctg 372 Query: 380 cggggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccagaggag 439 | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 373 ccgggggccggggcttcttccgtgggggccgaggacggggccgtgggttctctagaggag 432 Query: 440 gaggggatcgaggctatggtggtagccggttcgagtccaggagtgggggctatggcggct 499 ||||||| ||||||||||| || | ||||||||||||||||||||||||||| || |||| Sbjct: 433 gaggggaccgaggctatggggggaaccggttcgagtccaggagtgggggctacggaggct 492 Query: 500 ccagggactactacagcagccggagtcagggtggcggctatggtgaccggagctcaggcg 559 |||| |||||||| ||||||||||||||| |||| ||||| ||||||||||||| |||| Sbjct: 493 ccagagactactatagcagccggagtcagagtggtggctacagtgaccggagctcgggcg 552 Query: 560 ggtcctacagagacagctacgacagttacgctacacacaacgagtaaaaa----tcctgc 615 |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct: 553 ggtcctacagagacagttacgacagttacgctacacacaacgagtaaaaacccttcctgc 612 Query: 616 tcaagatcgtccttccaatggctgtatatttaaagattttgggagctccgctgaatcgtt 675 ||||||||||||||||||||||||| | |||||||||| |||||||| ||||||| |||| Sbjct: 613 tcaagatcgtccttccaatggctgtgtgtttaaagattgtgggagcttcgctgaa-cgtt 671 Query: 676 aatgtgtagtgaatccacctccttgta--cccacttttgtagtcttatcagttcctatct 733 |||||||||| ||| |||||||||||| |||||||| |||||| | || |||| |||| Sbjct: 672 aatgtgtagtaaatgcacctccttgtattcccactttcgtagtcatttcggttctgatct 731 Query: 734 tgtcaaacacagcctgactgcttctgac-cccagatggcctcattattacacttttcttt 792 |||||||| ||||||||| ||||||||| || ||||||||| ||| || |||||||||| Sbjct: 732 tgtcaaacccagcctgaccgcttctgacgccgggatggcctcgttactagacttttcttt 791 Query: 793 ttaaagaagtgc 804 |||| ||||||| Sbjct: 792 ttaaggaagtgc 803 >gnl|UG|Mm#S8041106 Mus musculus cold inducible RNA binding protein (Cirbp), mRNA /cds=(83,601) /gb=NM_007705 /gi=6680945 /ug=Mm.17898 /len=1256 Length = 1256 Score = 555 bits (280), Expect = e-156 Identities = 496/568 (87%) Strand = Plus / Plus Query: 41 gctgtcttcccgcctgcgccagggacctgcccaactcagtggtgaccatggcatcagacg 100 ||||||||||||| ||| ||||||||||||| |||||| || ||||||||||||| | Sbjct: 36 gctgtcttcccgctcgcgtcagggacctgcccgactcagcggctgccatggcatcagatg 95 Query: 101 agggcaaacttttcgttggagggctgagctttgacaccaatgagcagtcgctggagcagg 160 | ||||| |||||||| ||||| || ||||| |||||||| |||||| |||||||||||| Sbjct: 96 aaggcaagcttttcgtgggaggactcagcttcgacaccaacgagcaggcgctggagcagg 155 Query: 161 tcttctcaaaatatgggcagatctcagaagtggtagtagtgaaggacagggagacccagc 220 ||||||| || |||||||||||||| |||||||| || || ||||||||||||||||||| Sbjct: 156 tcttctccaagtatgggcagatctccgaagtggtggtggtaaaggacagggagacccagc 215 Query: 221 gatcgaggggctttgggtttgtcacctttgagaacattgatgacgccaaggacgctatga 280 |||| | ||||||||||||||||||||||| || || |||||||| |||||||| |||| Sbjct: 216 gatcccgaggctttgggtttgtcacctttgaaaatatcgatgacgctaaggacgccatga 275 Query: 281 tggccatgaacgggaagtctgtggatgggcggcagatccgggttgaccaggccggcaagt 340 |||| ||||| |||||||||||||| |||||||||||| | ||||||||||| ||||||| Sbjct: 276 tggctatgaatgggaagtctgtggacgggcggcagatcagagttgaccaggctggcaagt 335 Query: 341 catctgataaccgatcccgtgggtaccgaggtggctcctcggggggccggggcttcttcc 400 | ||||| ||||| ||||| || ||||| |||||||| | || ||||||||||| |||| Sbjct: 336 cttctgacaaccggtcccgaggataccggggtggctctgctggaggccggggctttttcc 395 Query: 401 gtgggggccgaggccggggccgtgggttctccagaggaggaggggatcgaggctatggtg 460 ||||||| ||| |||||||||| |||||||||||||||||||| || || |||||||| | Sbjct: 396 gtgggggacgaagccggggccgagggttctccagaggaggaggagaccggggctatggag 455 Query: 461 gtagccggttcgagtccaggagtgggggctatggcggctccagggactactacagcagcc 520 || |||| || |||||| |||||||||| ||||| |||||||| |||||||| ||||| Sbjct: 456 gtggccgctttgagtcccggagtgggggttatggaggctccagagactactatgccagcc 515 Query: 521 ggagtcagggtggcggctatggtgaccggagctcaggcgggtcctacagagacagctacg 580 |||||||||||||| |||||||| | |||||||| || |||||||||||||||||||| | Sbjct: 516 ggagtcagggtggcagctatggttatcggagctcgggagggtcctacagagacagctatg 575 Query: 581 acagttacgctacacacaacgagtaaaa 608 ||||||| |||||||||||||||||||| Sbjct: 576 acagttatgctacacacaacgagtaaaa 603 Score = 48.1 bits (24), Expect = 8e-04 Identities = 39/44 (88%) Strand = Plus / Plus Query: 831 gttttgcaaagcacttcaggttttactttttatcgtgagccatg 874 |||||| |||||||||||| ||||||| |||| | ||||||||| Sbjct: 806 gttttggaaagcacttcagattttactgtttaccatgagccatg 849 Score = 36.2 bits (18), Expect = 2.9 Identities = 21/22 (95%) Strand = Plus / Plus Query: 696 ccttgtacccacttttgtagtc 717 |||||| ||||||||||||||| Sbjct: 680 ccttgttcccacttttgtagtc 701 >gnl|UG|Hs#S1654379 au88b09.x1 Schneider fetal brain 00004 Homo sapiens cDNA clone IMAGE:2783321 3' similar to SW:CIRP_HUMAN Q14011 COLD-INDUCIBLE RNA-BINDING PROTEIN ;, mRNA sequence /clone=IMAGE:2783321 /clone_end=3' /gb=AW157370 /gi=6228771 /ug=Hs.248412 /len=452 Length = 452 Score = 48.1 bits (24), Expect = 8e-04 Identities = 54/64 (84%) Strand = Plus / Minus Query: 382 gggggccggggcttcttccgtgggggccgaggccggggccgtgggttctccagaggagga 441 ||||||||||| || |||| |||||||| ||| ||||||||||||| | | ||||||| Sbjct: 380 gggggccggggttttttccttgggggccaaggaaggggccgtgggttttttaaaggagga 321 Query: 442 gggg 445 |||| Sbjct: 320 gggg 317 >gnl|UG|Mm#S10862952 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230345L12 product:glutamate receptor, ionotropic, AMPA3 (alpha 3), full insert sequence. /gb=AK046158 /gi=26091355 /ug=Mm.234688 /len=2768 Length = 2768 Score = 48.1 bits (24), Expect = 8e-04 Identities = 24/24 (100%) Strand = Plus / Minus Query: 709 tttgtagtcttatcagttcctatc 732 |||||||||||||||||||||||| Sbjct: 1917 tttgtagtcttatcagttcctatc 1894 >gnl|UG|Mm#S8041736 Mus musculus heterogeneous nuclear ribonucleoprotein A1 (Hnrpa1), mRNA /cds=(25,987) /gb=NM_010447 /gi=6754219 /ug=Mm.27927 /len=1702 Length = 1702 Score = 42.1 bits (21), Expect = 0.047 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 gatcgaggggctttgggtttgtcac 245 |||| |||||||||||||||||||| Sbjct: 182 gatccaggggctttgggtttgtcac 206 >gnl|UG|Hs#S4617015 Homo sapiens cDNA FLJ37104 fis, clone BRACE2019371, highly similar to HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1. /gb=AK094423 /gi=21753481 /ug=Hs.446380 /len=2115 Length = 2115 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 aggggctttgggtttgtcac 245 |||||||||||||||||||| Sbjct: 986 aggggctttgggtttgtcac 1005 >gnl|UG|Hs#S3602281 Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRPA1), transcript variant 2, mRNA /cds=(105,1223) /gb=NM_031157 /gi=14043069 /ug=Hs.376844 /len=1925 Length = 1925 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 aggggctttgggtttgtcac 245 |||||||||||||||||||| Sbjct: 267 aggggctttgggtttgtcac 286 >gnl|UG|Hs#S4356380 UI-1-BB1p-axr-c-03-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-axr-c-03-0-UI 3', mRNA sequence /clone=UI-1-BB1p-axr-c-03-0-UI /clone_end=3' /gb=BQ022626 /gi=19757905 /ug=Hs.364853 /len=724 Length = 724 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 aggggctttgggtttgtcac 245 |||||||||||||||||||| Sbjct: 528 aggggctttgggtttgtcac 547 >gnl|UG|Hs#S4297113 UI-CF-DU1-adl-n-19-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone UI-CF-DU1-adl-n-19-0-UI 3', mRNA sequence /clone=UI-CF-DU1-adl-n-19-0-UI /clone_end=3' /gb=BM979153 /gi=19599311 /ug=Hs.363419 /len=699 Length = 699 Score = 40.1 bits (20), Expect = 0.18 Identities = 23/24 (95%) Strand = Plus / Minus Query: 709 tttgtagtcttatcagttcctatc 732 ||||||||||||| |||||||||| Sbjct: 294 tttgtagtcttatgagttcctatc 271 Database: UniGene(Bt+Hs+Ssc+Mm) Posted date: May 6, 2003 5:18 PM Number of letters in database: 241,976,893 Number of sequences in database: 230,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 144343 Number of Sequences: 230285 Number of extensions: 144343 Number of successful extensions: 11999 Number of sequences better than 10.0: 42 length of query: 961 length of database: 241,976,893 effective HSP length: 19 effective length of query: 942 effective length of database: 237,601,478 effective search space: 223820592276 effective search space used: 223820592276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)