Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-000211


Query

>20030531C-000211 (20030531C-000211) 20030531C-000211
GGAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAGCCA
CTTTTGTCGT GCCCTTGAGA ATTAGCCACA ATGATTCCTC CGGTGCTCAT
CTTTTTCCTG AGTTTTCTCT GCCATGCTGC TATCGCAGGG CGAACCTGTC
CCAAGCCGGA AGAGTTACCG TTTGCCGTAG TTGTGCCGTT GAAATCATCC
TATGCGCCAG GGGAGGAGAT AGTGTATACC TGCCAGCCGG GGTACGTGTC
CCGGGGAGGG ATCCGGCGGT TTATCTGCCC GCTCACAGGA CTTTGGCCCA
TCAACACTCT GAAATGTCTA CCCAGAGTAT GTCCTTTTGC TGGAATCTTA
GAAAACGGAG CTGTACGCTA TACAACTTTT GAGTATCCCA ACACGATCAG
TTTCACTTGC AACCGGGGTT TTTCTCTGAA AGGAGCTAAT TCGGCTAAAT
GTACCGAGGA AGGAAAATGG AGTCCAGACC TTCCTGTCTG TACCCCTATA
ACCTGCCCTC CACCACCCAC ACCCAAGTTT GCAAAACTTA GTGTTTATAA
GCCATTGGCT GGGAACAACT CTCTCTATGG AGGCAAGGCA GTCTTTGAAT
GCTTGCCACA GCACGCAATG TTTGGAAATG GTACAATTAC TTGCACAGAA
CATGGAAATT GGACTGAATT ACCAGAATGT AAGGAAGTAA AATGCCCATT
CCCATCAAGA CCAGAAAACG GATTTGTGAA CTATCCTGCA AAGCAAGTTC
TTTATTACCA GGATAAAGCC ACATATGGTT GCCATGACAC TTACACCTTG
GATGGACCAG AAGAAGTTGA ATGTAACAAA TTTGGAAACT GGTCTGCACA
GCCCAGCTGT AAAGCATCTT GTAAATTATC TGTGAAAAGA GCTACTGTGA
TATATGAAGG AGAGAGAGTC AATATCCAAG ATAAATTTAA AGAATGGAAT
GCTGCATGGC CCAAAAAATT TCTTTCTTCT GCAAGAATAA GGAAAAAAAA
GTGC

Search to UniGene2 database

Query= 20030531C-000211 (20030531C-000211) 20030531C-000211
         (1004 letters)

Database: UniGene(Bt+Hs+Ssc+Mm)
           230,285 sequences; 241,976,893 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gnl|UG|Bt#S12072632 Bos taurus apolipoprotein H (APOH), mRNA /c...   680  0.0
Alignment   gnl|UG|Hs#S1728654 Homo sapiens apolipoprotein H (beta-2-glycop...   628  e-178
Alignment   gnl|UG|Ssc#S6087607 IIU602653765.R1 CSEQFXL11 pig liver Sus scr...   389  e-106
Alignment   gnl|UG|Mm#S9631133 Mus musculus apolipoprotein H (Apoh), mRNA /...   133  2e-29
Alignment   gnl|UG|Hs#S4621002 Homo sapiens mRNA for FLJ00273 protein. /cds...    38  0.76
Alignment   gnl|UG|Hs#S4298538 UI-CF-EN1-add-o-04-0-UI.s1 UI-CF-EN1 Homo sa...    36  3.0
Alignment   gnl|UG|Hs#S4359402 UI-1-BB1p-axv-e-01-0-UI.s1 NCI_CGAP_Pl6 Homo...    36  3.0
Alignment   gnl|UG|Hs#S4613244 Homo sapiens cDNA FLJ40915 fis, clone UTERU2...    36  3.0
Alignment   gnl|UG|Hs#S1729109 Homo sapiens CD163 antigen (CD163), mRNA /cd...    36  3.0
Alignment   gnl|UG|Hs#S2652230 Homo sapiens cDNA FLJ14134 fis, clone MAMMA1...    36  3.0


>gnl|UG|Bt#S12072632 Bos taurus apolipoprotein H (APOH), mRNA
           /cds=(43,1080) /gb=NM_173992 /gi=27806740 /ug=Bt.5044
           /len=1185
          Length = 1185

 Score =  680 bits (343), Expect = 0.0
 Identities = 747/879 (84%), Gaps = 2/879 (0%)
 Strand = Plus / Plus


Query: 114 tttctctgccatgctgctatcgcagggcgaacctgtcccaagccggaagagttaccgttt 173
           ||||||||||| | |||||||||||| |||||||| |||||||| || ||| ||||||||
Sbjct: 76  tttctctgccacgttgctatcgcaggacgaacctgccccaagccagatgagctaccgttt 135


Query: 174 gccgtagttgtgccgttgaaatcatcctatgcgccaggggaggagatagtgtatacctgc 233
            ||   || || ||  |||||    |||||| ||| |||||| ||||||| |   |||||
Sbjct: 136 tccacggtggttccactgaaacggacctatgagcccggggagcagatagtcttctcctgc 195


Query: 234 cagccggggtacgtgtcccggggagggatccggcggtttatctgcccgctcacaggactt 293
           |||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 196 cagccgggctacgtgtcccggggagggatccggcggtttacatgcccgctcacaggactc 255


Query: 294 tggcccatcaacactctgaaatgtctacccagagtatgtccttttgctggaatcttagaa 353
           |||||||||||||| ||||||||  | ||||||||||||||||||||||| |||||||||
Sbjct: 256 tggcccatcaacacgctgaaatgcatgcccagagtatgtccttttgctgggatcttagaa 315


Query: 354 aacggagctgtacgctatacaacttttgagtatcccaacacgatcagtttcacttgcaac 413
           |||||| | |||||||||||||| |||| |||||| ||||| ||||| |   ||||| ||
Sbjct: 316 aacggaacggtacgctatacaacgtttgggtatccaaacaccatcagctcttcttgccac 375


Query: 414 cggggtttttctctgaaaggagctaattcggctaaatgtaccgaggaaggaaaatggagt 473
             ||| |||| |||||||||||||| ||| || ||||| || |||||||| || |||||
Sbjct: 376 acggggttttatctgaaaggagctagttctgcaaaatgcactgaggaagggaagtggagc 435


Query: 474 ccagaccttcctgtctgtacccctataacctgccctccaccacccacacccaagtttgca 533
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 436 ccagaccttcctgtctgtgcccctataacctgccctccaccacccatacccaagtttgca 495


Query: 534 aaacttagtgtttataagccattggctgggaacaactctctctatggaggcaaggcagtc 593
           |  || || ||||| ||||| |||||||||||||||||  |||||||  |||||||||||
Sbjct: 496 agtctcagcgtttacaagccgttggctgggaacaactccttctatggcagcaaggcagtc 555


Query: 594 tttgaatgcttgccacagcacgcaatgtttggaaatggtacaattacttgcacagaacat 653
           ||| | ||||||||||  ||||| |||||||||||||  ||  |||| ||||| ||||||
Sbjct: 556 tttaagtgcttgccacgccacgcgatgtttggaaatgacaccgttacctgcacggaacat 615


Query: 654 ggaaattggactgaattaccagaatgtaaggaagtaaaatgcccattcccatcaagacca 713
           || || || ||  | || |||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 616 gggaactgcacgcagttgccagaatgcagggaagtaagatgcccattcccatcaagacca 675


Query: 714 gaaaacggatttgtgaactatcctgcaaagcaagttctttattaccaggataaagccaca 773
           || || || ||||||||| |||||||||| | ||| || || ||  |||| |  |||||
Sbjct: 676 gacaatgggtttgtgaaccatcctgcaaatccagtgctctactataaggacaccgccacc 735


Query: 774 tatggttgccatgacacttacaccttggatggaccagaagaagttgaatgtaacaaattt 833
           | ||| ||||| || || ||  ||||||||||||| |||||||| ||||| | ||||||
Sbjct: 736 tttggctgccacgaaacgtattccttggatggaccggaagaagtagaatgcagcaaattc 795


Query: 834 ggaaactggtctgcacagcccagctgtaaagcatcttgtaaattatctgtgaaaagagct 893
           |||||||||||||||||||| | |||||||||||||||||| |||||| | |||||||||
Sbjct: 796 ggaaactggtctgcacagccaaactgtaaagcatcttgtaagttatctattaaaagagct 855


Query: 894 actgtgatatatgaaggagagagagtcaatatccaagataaatttaaagaatggaatgct 953
           ||||||||||||||||||||||||||   ||||||  | |||||| ||||||||||||||
Sbjct: 856 actgtgatatatgaaggagagagagtagctatccagaacaaattt-aagaatggaatgct 914


Query: 954 gcatggcccaaaaaatttctttcttctgcaagaataagg 992
           |||||| ||||||| ||||||||||||||||||||||||
Sbjct: 915 gcatgg-ccaaaaagtttctttcttctgcaagaataagg 952



>gnl|UG|Hs#S1728654 Homo sapiens apolipoprotein H
           (beta-2-glycoprotein I) (APOH), mRNA /cds=(34,1071)
           /gb=NM_000042 /gi=4557326 /ug=Hs.1252 /len=1182
          Length = 1182

 Score =  628 bits (317), Expect = e-178
 Identities = 769/917 (83%), Gaps = 2/917 (0%)
 Strand = Plus / Plus


Query: 76  ccacaatgattcctccggtgctcatctttttcctgagttttctctgccatgctgctatcg 135
           ||||||||||| |||| ||||||||||| |||  ||||||||||||||||| |||||| |
Sbjct: 29  ccacaatgatttctccagtgctcatcttgttctcgagttttctctgccatgttgctattg 88


Query: 136 cagggcgaacctgtcccaagccggaagagttaccgtttgccgtagttgtgccgttgaaat 195
           |||| || |||||||||||||| || || ||||| ||| ||  ||| || ||||| |||
Sbjct: 89  caggacggacctgtcccaagccagatgatttaccattttccacagtggtcccgttaaaaa 148


Query: 196 catcctatgcgccaggggaggagatagtgtatacctgccagccggggtacgtgtcccggg 255
           ||| ||||| |||||| || |||||   |||| ||||| ||||||| || |||||||| |
Sbjct: 149 cattctatgagccaggagaagagattacgtattcctgcaagccgggctatgtgtcccgag 208


Query: 256 gagggatccggcggtttatctgcccgctcacaggactttggcccatcaacactctgaaat 315
           |||||||  |   |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 209 gagggatgagaaagtttatctgccctctcacaggactgtggcccatcaacactctgaaat 268


Query: 316 gtctacccagagtatgtccttttgctggaatcttagaaaacggagctgtacgctatacaa 375
           ||  |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 269 gtacacccagagtatgtccttttgctggaatcttagaaaatggagccgtacgctatacga 328


Query: 376 cttttgagtatcccaacacgatcagtttcacttgcaaccggggtttttctctgaaaggag 435
           ||||||| ||||||||||||||||||||  |||| |||   || |||| |||||| || |
Sbjct: 329 cttttgaatatcccaacacgatcagtttttcttgtaacactgggttttatctgaatggcg 388


Query: 436 ctaattcggctaaatgtaccgaggaaggaaaatggagtccagaccttcctgtctgtaccc 495
           || |||| || || || || ||||||||||||||||| || || |||||||||||| | |
Sbjct: 389 ctgattctgccaagtgcactgaggaaggaaaatggagcccggagcttcctgtctgtgctc 448


Query: 496 ctataacctgccctccaccacccacacccaagtttgcaaaacttagtgtttataagccat 555
           | || | ||||||||||||| ||| ||| | |||||||| |||| |||||||||||||||
Sbjct: 449 ccatcatctgccctccaccatccatacctacgtttgcaacacttcgtgtttataagccat 508


Query: 556 tggctgggaacaactctctctatggaggcaaggcagtctttgaatgcttgccacagcacg 615
             ||||| ||||| || |||||| | | ||  ||||| |||||||| |||||||| || |
Sbjct: 509 cagctggaaacaattccctctatcgggacacagcagtttttgaatgtttgccacaacatg 568


Query: 616 caatgtttggaaatggtacaattacttgcacagaacatggaaattggactgaattaccag 675
           | ||||||||||||| ||||||||| |||||   |||||||||||||||| |||||||||
Sbjct: 569 cgatgtttggaaatgatacaattacctgcacgacacatggaaattggactaaattaccag 628


Query: 676 aatgtaaggaagtaaaatgcccattcccatcaagaccagaaaacggatttgtgaactatc 735
           |||| | ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 629 aatgcagggaagtaaaatgcccattcccatcaagaccagacaatggatttgtgaactatc 688


Query: 736 ctgcaaagcaagttctttattaccaggataaagccacatatggttgccatgacacttaca 795
           ||||||| | |   ||||||||| ||||||||||||||| ||| ||||||||    ||
Sbjct: 689 ctgcaaaaccaacactttattacaaggataaagccacatttggctgccatgatggatatt 748


Query: 796 ccttggatggaccagaagaagttgaatgtaacaaatttggaaactggtctgcacagccca 855
           |  ||||||| || |||||| | ||||||| |||| | ||||||||||||||   ||| |
Sbjct: 749 ctctggatggcccggaagaaatagaatgtaccaaactgggaaactggtctgccatgccaa 808


Query: 856 gctgtaaagcatcttgtaaattatctgtgaaaagagctactgtgatatatgaaggagaga 915
           | ||||||||||||||||||||| ||||||||| ||| |||||| | ||  |||||||||
Sbjct: 809 gttgtaaagcatcttgtaaattacctgtgaaaaaagccactgtggtgtaccaaggagaga 868


Query: 916 gagtcaatatccaagataaatttaaagaatggaatgctgcatggcccaaaaaatttcttt 975
           |||| || || || || |||||| |||||||||||||| |||||   | ||| |||||||
Sbjct: 869 gagtaaagattcaggaaaaattt-aagaatggaatgctacatgg-tgataaagtttcttt 926


Query: 976 cttctgcaagaataagg 992
           ||||||||| |||||||
Sbjct: 927 cttctgcaaaaataagg 943



>gnl|UG|Ssc#S6087607 IIU602653765.R1 CSEQFXL11 pig liver Sus scrofa
           cDNA, mRNA sequence /gb=BM659196 /gi=18961693
           /ug=Ssc.10442 /len=442
          Length = 442

 Score =  389 bits (196), Expect = e-106
 Identities = 210/212 (99%), Gaps = 2/212 (0%)
 Strand = Plus / Minus


Query: 781 gccatgacacttacaccttggatggaccagaagaagttgaatgtaacaaatttggaaact 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gccatgacacttacaccttggatggaccagaagaagttgaatgtaacaaatttggaaact 383


Query: 841 ggtctgcacagcccagctgtaaagcatcttgtaaattatctgtgaaaagagctactgtga 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggtctgcacagcccagctgtaaagcatcttgtaaattatctgtgaaaagagctactgtga 323


Query: 901 tatatgaaggagagagagtcaatatccaagataaatttaaagaatggaatgctgcatggc 960
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 tatatgaaggagagagagtcaatatccaagataaatttaa-gaatggaatgctgcatggc 264


Query: 961 ccaaaaaatttctttcttctgcaagaataagg 992
           | ||||||||||||||||||||||||||||||
Sbjct: 263 c-aaaaaatttctttcttctgcaagaataagg 233



>gnl|UG|Mm#S9631133 Mus musculus apolipoprotein H (Apoh), mRNA
           /cds=(32,1069) /gb=NM_013475 /gi=7304898 /ug=Mm.2266
           /len=1165
          Length = 1165

 Score =  133 bits (67), Expect = 2e-29
 Identities = 139/163 (85%)
 Strand = Plus / Plus


Query: 229 cctgccagccggggtacgtgtcccggggagggatccggcggtttatctgcccgctcacag 288
           ||||| |||| || ||||||||| ||||||||||  | ||||||| ||| || |||||||
Sbjct: 180 cctgcaagccaggctacgtgtccaggggagggatgagacggtttacctgtcctctcacag 239


Query: 289 gactttggcccatcaacactctgaaatgtctacccagagtatgtccttttgctggaatct 348
           || | |||||||||||||| |||| |||| | ||||||||||||||||| ||||||||||
Sbjct: 240 gaatgtggcccatcaacaccctgagatgtgtccccagagtatgtcctttcgctggaatct 299


Query: 349 tagaaaacggagctgtacgctatacaacttttgagtatcccaa 391
           ||||||| |||  ||||||||| || | |||||| ||||||||
Sbjct: 300 tagaaaatggaattgtacgctacacgagttttgaatatcccaa 342


 Score = 71.9 bits (36), Expect = 5e-11
 Identities = 147/184 (79%)
 Strand = Plus / Plus


Query: 642 tgcacagaacatggaaattggactgaattaccagaatgtaaggaagtaaaatgcccattc 701
           ||||||||||| ||||| |||||   ||| ||||||||   |||||||||||| || |||
Sbjct: 593 tgcacagaacaaggaaactggacccgattgccagaatgcctggaagtaaaatgtcccttc 652


Query: 702 ccatcaagaccagaaaacggatttgtgaactatcctgcaaagcaagttctttattaccag 761
           ||  | || |||||||| || | |||||| |||||||||||||  || |||   ||  ||
Sbjct: 653 cctccgaggccagaaaatgggtatgtgaattatcctgcaaagccggtgcttctatataag 712


Query: 762 gataaagccacatatggttgccatgacacttacaccttggatggaccagaagaagttgaa 821
           ||||||||||||| |||||||||||| || ||||   |||| || ||||||||||  |||
Sbjct: 713 gataaagccacatttggttgccatgagacatacaagctggacggcccagaagaagcggaa 772


Query: 822 tgta 825
           ||||
Sbjct: 773 tgta 776



>gnl|UG|Hs#S4621002 Homo sapiens mRNA for FLJ00273 protein.
           /cds=(1501,1935) /gb=AK090398 /gi=21748483 /ug=Hs.148250
           /len=5703
          Length = 5703

 Score = 38.2 bits (19), Expect = 0.76
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 104 tttcctgagttttctctgc 122
           |||||||||||||||||||
Sbjct: 434 tttcctgagttttctctgc 452



>gnl|UG|Hs#S4298538 UI-CF-EN1-add-o-04-0-UI.s1 UI-CF-EN1 Homo
           sapiens cDNA clone UI-CF-EN1-add-o-04-0-UI 3', mRNA
           sequence /clone=UI-CF-EN1-add-o-04-0-UI /clone_end=3'
           /gb=BM980578 /gi=19602183 /ug=Hs.424591 /len=794
          Length = 794

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus


Query: 616 caatgtttggaaatggta 633
           ||||||||||||||||||
Sbjct: 111 caatgtttggaaatggta 128



>gnl|UG|Hs#S4359402 UI-1-BB1p-axv-e-01-0-UI.s1 NCI_CGAP_Pl6 Homo
           sapiens cDNA clone UI-1-BB1p-axv-e-01-0-UI 3', mRNA
           sequence /clone=UI-1-BB1p-axv-e-01-0-UI /clone_end=3'
           /gb=BQ025649 /gi=19760928 /ug=Hs.344829 /len=946
          Length = 946

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus


Query: 104 tttcctgagttttctctg 121
           ||||||||||||||||||
Sbjct: 555 tttcctgagttttctctg 538



>gnl|UG|Hs#S4613244 Homo sapiens cDNA FLJ40915 fis, clone
            UTERU2005450. /gb=AK098234 /gi=21758205 /ug=Hs.207079
            /len=2739
          Length = 2739

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 101  ctttttcctgagttttctctgc 122
            ||||||| ||||||||||||||
Sbjct: 1999 ctttttcatgagttttctctgc 2020



>gnl|UG|Hs#S1729109 Homo sapiens CD163 antigen (CD163), mRNA
            /cds=(102,3572) /gb=NM_004244 /gi=19923275 /ug=Hs.74076
            /len=4950
          Length = 4950

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus


Query: 842  gtctgcacagcccagctg 859
            ||||||||||||||||||
Sbjct: 2699 gtctgcacagcccagctg 2682



>gnl|UG|Hs#S2652230 Homo sapiens cDNA FLJ14134 fis, clone
            MAMMA1002708. /gb=AK024196 /gi=10436517 /ug=Hs.57932
            /len=1727
          Length = 1727

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 101  ctttttcctgagttttctctgc 122
            ||||||| ||||||||||||||
Sbjct: 987  ctttttcatgagttttctctgc 1008


  Database: UniGene(Bt+Hs+Ssc+Mm)
    Posted date:  May 6, 2003  5:18 PM
  Number of letters in database: 241,976,893
  Number of sequences in database:  230,285

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136597
Number of Sequences: 230285
Number of extensions: 136597
Number of successful extensions: 10341
Number of sequences better than 10.0: 18
length of query: 1004
length of database: 241,976,893
effective HSP length: 19
effective length of query: 985
effective length of database: 237,601,478
effective search space: 234037455830
effective search space used: 234037455830
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)