>20030531C-000211 (20030531C-000211) 20030531C-000211 GGAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAGCCA CTTTTGTCGT GCCCTTGAGA ATTAGCCACA ATGATTCCTC CGGTGCTCAT CTTTTTCCTG AGTTTTCTCT GCCATGCTGC TATCGCAGGG CGAACCTGTC CCAAGCCGGA AGAGTTACCG TTTGCCGTAG TTGTGCCGTT GAAATCATCC TATGCGCCAG GGGAGGAGAT AGTGTATACC TGCCAGCCGG GGTACGTGTC CCGGGGAGGG ATCCGGCGGT TTATCTGCCC GCTCACAGGA CTTTGGCCCA TCAACACTCT GAAATGTCTA CCCAGAGTAT GTCCTTTTGC TGGAATCTTA GAAAACGGAG CTGTACGCTA TACAACTTTT GAGTATCCCA ACACGATCAG TTTCACTTGC AACCGGGGTT TTTCTCTGAA AGGAGCTAAT TCGGCTAAAT GTACCGAGGA AGGAAAATGG AGTCCAGACC TTCCTGTCTG TACCCCTATA ACCTGCCCTC CACCACCCAC ACCCAAGTTT GCAAAACTTA GTGTTTATAA GCCATTGGCT GGGAACAACT CTCTCTATGG AGGCAAGGCA GTCTTTGAAT GCTTGCCACA GCACGCAATG TTTGGAAATG GTACAATTAC TTGCACAGAA CATGGAAATT GGACTGAATT ACCAGAATGT AAGGAAGTAA AATGCCCATT CCCATCAAGA CCAGAAAACG GATTTGTGAA CTATCCTGCA AAGCAAGTTC TTTATTACCA GGATAAAGCC ACATATGGTT GCCATGACAC TTACACCTTG GATGGACCAG AAGAAGTTGA ATGTAACAAA TTTGGAAACT GGTCTGCACA GCCCAGCTGT AAAGCATCTT GTAAATTATC TGTGAAAAGA GCTACTGTGA TATATGAAGG AGAGAGAGTC AATATCCAAG ATAAATTTAA AGAATGGAAT GCTGCATGGC CCAAAAAATT TCTTTCTTCT GCAAGAATAA GGAAAAAAAA GTGC
Query= 20030531C-000211 (20030531C-000211) 20030531C-000211 (1004 letters) Database: UniGene(Bt+Hs+Ssc+Mm) 230,285 sequences; 241,976,893 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gnl|UG|Bt#S12072632 Bos taurus apolipoprotein H (APOH), mRNA /c... 680 0.0 Alignment gnl|UG|Hs#S1728654 Homo sapiens apolipoprotein H (beta-2-glycop... 628 e-178 Alignment gnl|UG|Ssc#S6087607 IIU602653765.R1 CSEQFXL11 pig liver Sus scr... 389 e-106 Alignment gnl|UG|Mm#S9631133 Mus musculus apolipoprotein H (Apoh), mRNA /... 133 2e-29 Alignment gnl|UG|Hs#S4621002 Homo sapiens mRNA for FLJ00273 protein. /cds... 38 0.76 Alignment gnl|UG|Hs#S4298538 UI-CF-EN1-add-o-04-0-UI.s1 UI-CF-EN1 Homo sa... 36 3.0 Alignment gnl|UG|Hs#S4359402 UI-1-BB1p-axv-e-01-0-UI.s1 NCI_CGAP_Pl6 Homo... 36 3.0 Alignment gnl|UG|Hs#S4613244 Homo sapiens cDNA FLJ40915 fis, clone UTERU2... 36 3.0 Alignment gnl|UG|Hs#S1729109 Homo sapiens CD163 antigen (CD163), mRNA /cd... 36 3.0 Alignment gnl|UG|Hs#S2652230 Homo sapiens cDNA FLJ14134 fis, clone MAMMA1... 36 3.0 >gnl|UG|Bt#S12072632 Bos taurus apolipoprotein H (APOH), mRNA /cds=(43,1080) /gb=NM_173992 /gi=27806740 /ug=Bt.5044 /len=1185 Length = 1185 Score = 680 bits (343), Expect = 0.0 Identities = 747/879 (84%), Gaps = 2/879 (0%) Strand = Plus / Plus Query: 114 tttctctgccatgctgctatcgcagggcgaacctgtcccaagccggaagagttaccgttt 173 ||||||||||| | |||||||||||| |||||||| |||||||| || ||| |||||||| Sbjct: 76 tttctctgccacgttgctatcgcaggacgaacctgccccaagccagatgagctaccgttt 135 Query: 174 gccgtagttgtgccgttgaaatcatcctatgcgccaggggaggagatagtgtatacctgc 233 || || || || ||||| |||||| ||| |||||| ||||||| | ||||| Sbjct: 136 tccacggtggttccactgaaacggacctatgagcccggggagcagatagtcttctcctgc 195 Query: 234 cagccggggtacgtgtcccggggagggatccggcggtttatctgcccgctcacaggactt 293 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 196 cagccgggctacgtgtcccggggagggatccggcggtttacatgcccgctcacaggactc 255 Query: 294 tggcccatcaacactctgaaatgtctacccagagtatgtccttttgctggaatcttagaa 353 |||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||| Sbjct: 256 tggcccatcaacacgctgaaatgcatgcccagagtatgtccttttgctgggatcttagaa 315 Query: 354 aacggagctgtacgctatacaacttttgagtatcccaacacgatcagtttcacttgcaac 413 |||||| | |||||||||||||| |||| |||||| ||||| ||||| | ||||| || Sbjct: 316 aacggaacggtacgctatacaacgtttgggtatccaaacaccatcagctcttcttgccac 375 Query: 414 cggggtttttctctgaaaggagctaattcggctaaatgtaccgaggaaggaaaatggagt 473 ||| |||| |||||||||||||| ||| || ||||| || |||||||| || ||||| Sbjct: 376 acggggttttatctgaaaggagctagttctgcaaaatgcactgaggaagggaagtggagc 435 Query: 474 ccagaccttcctgtctgtacccctataacctgccctccaccacccacacccaagtttgca 533 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct: 436 ccagaccttcctgtctgtgcccctataacctgccctccaccacccatacccaagtttgca 495 Query: 534 aaacttagtgtttataagccattggctgggaacaactctctctatggaggcaaggcagtc 593 | || || ||||| ||||| ||||||||||||||||| ||||||| ||||||||||| Sbjct: 496 agtctcagcgtttacaagccgttggctgggaacaactccttctatggcagcaaggcagtc 555 Query: 594 tttgaatgcttgccacagcacgcaatgtttggaaatggtacaattacttgcacagaacat 653 ||| | |||||||||| ||||| ||||||||||||| || |||| ||||| |||||| Sbjct: 556 tttaagtgcttgccacgccacgcgatgtttggaaatgacaccgttacctgcacggaacat 615 Query: 654 ggaaattggactgaattaccagaatgtaaggaagtaaaatgcccattcccatcaagacca 713 || || || || | || |||||||| | |||||||| |||||||||||||||||||||| Sbjct: 616 gggaactgcacgcagttgccagaatgcagggaagtaagatgcccattcccatcaagacca 675 Query: 714 gaaaacggatttgtgaactatcctgcaaagcaagttctttattaccaggataaagccaca 773 || || || ||||||||| |||||||||| | ||| || || || |||| | ||||| Sbjct: 676 gacaatgggtttgtgaaccatcctgcaaatccagtgctctactataaggacaccgccacc 735 Query: 774 tatggttgccatgacacttacaccttggatggaccagaagaagttgaatgtaacaaattt 833 | ||| ||||| || || || ||||||||||||| |||||||| ||||| | |||||| Sbjct: 736 tttggctgccacgaaacgtattccttggatggaccggaagaagtagaatgcagcaaattc 795 Query: 834 ggaaactggtctgcacagcccagctgtaaagcatcttgtaaattatctgtgaaaagagct 893 |||||||||||||||||||| | |||||||||||||||||| |||||| | ||||||||| Sbjct: 796 ggaaactggtctgcacagccaaactgtaaagcatcttgtaagttatctattaaaagagct 855 Query: 894 actgtgatatatgaaggagagagagtcaatatccaagataaatttaaagaatggaatgct 953 |||||||||||||||||||||||||| |||||| | |||||| |||||||||||||| Sbjct: 856 actgtgatatatgaaggagagagagtagctatccagaacaaattt-aagaatggaatgct 914 Query: 954 gcatggcccaaaaaatttctttcttctgcaagaataagg 992 |||||| ||||||| |||||||||||||||||||||||| Sbjct: 915 gcatgg-ccaaaaagtttctttcttctgcaagaataagg 952 >gnl|UG|Hs#S1728654 Homo sapiens apolipoprotein H (beta-2-glycoprotein I) (APOH), mRNA /cds=(34,1071) /gb=NM_000042 /gi=4557326 /ug=Hs.1252 /len=1182 Length = 1182 Score = 628 bits (317), Expect = e-178 Identities = 769/917 (83%), Gaps = 2/917 (0%) Strand = Plus / Plus Query: 76 ccacaatgattcctccggtgctcatctttttcctgagttttctctgccatgctgctatcg 135 ||||||||||| |||| ||||||||||| ||| ||||||||||||||||| |||||| | Sbjct: 29 ccacaatgatttctccagtgctcatcttgttctcgagttttctctgccatgttgctattg 88 Query: 136 cagggcgaacctgtcccaagccggaagagttaccgtttgccgtagttgtgccgttgaaat 195 |||| || |||||||||||||| || || ||||| ||| || ||| || ||||| ||| Sbjct: 89 caggacggacctgtcccaagccagatgatttaccattttccacagtggtcccgttaaaaa 148 Query: 196 catcctatgcgccaggggaggagatagtgtatacctgccagccggggtacgtgtcccggg 255 ||| ||||| |||||| || ||||| |||| ||||| ||||||| || |||||||| | Sbjct: 149 cattctatgagccaggagaagagattacgtattcctgcaagccgggctatgtgtcccgag 208 Query: 256 gagggatccggcggtttatctgcccgctcacaggactttggcccatcaacactctgaaat 315 ||||||| | |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 209 gagggatgagaaagtttatctgccctctcacaggactgtggcccatcaacactctgaaat 268 Query: 316 gtctacccagagtatgtccttttgctggaatcttagaaaacggagctgtacgctatacaa 375 || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct: 269 gtacacccagagtatgtccttttgctggaatcttagaaaatggagccgtacgctatacga 328 Query: 376 cttttgagtatcccaacacgatcagtttcacttgcaaccggggtttttctctgaaaggag 435 ||||||| |||||||||||||||||||| |||| ||| || |||| |||||| || | Sbjct: 329 cttttgaatatcccaacacgatcagtttttcttgtaacactgggttttatctgaatggcg 388 Query: 436 ctaattcggctaaatgtaccgaggaaggaaaatggagtccagaccttcctgtctgtaccc 495 || |||| || || || || ||||||||||||||||| || || |||||||||||| | | Sbjct: 389 ctgattctgccaagtgcactgaggaaggaaaatggagcccggagcttcctgtctgtgctc 448 Query: 496 ctataacctgccctccaccacccacacccaagtttgcaaaacttagtgtttataagccat 555 | || | ||||||||||||| ||| ||| | |||||||| |||| ||||||||||||||| Sbjct: 449 ccatcatctgccctccaccatccatacctacgtttgcaacacttcgtgtttataagccat 508 Query: 556 tggctgggaacaactctctctatggaggcaaggcagtctttgaatgcttgccacagcacg 615 ||||| ||||| || |||||| | | || ||||| |||||||| |||||||| || | Sbjct: 509 cagctggaaacaattccctctatcgggacacagcagtttttgaatgtttgccacaacatg 568 Query: 616 caatgtttggaaatggtacaattacttgcacagaacatggaaattggactgaattaccag 675 | ||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||| Sbjct: 569 cgatgtttggaaatgatacaattacctgcacgacacatggaaattggactaaattaccag 628 Query: 676 aatgtaaggaagtaaaatgcccattcccatcaagaccagaaaacggatttgtgaactatc 735 |||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 629 aatgcagggaagtaaaatgcccattcccatcaagaccagacaatggatttgtgaactatc 688 Query: 736 ctgcaaagcaagttctttattaccaggataaagccacatatggttgccatgacacttaca 795 ||||||| | | ||||||||| ||||||||||||||| ||| |||||||| || Sbjct: 689 ctgcaaaaccaacactttattacaaggataaagccacatttggctgccatgatggatatt 748 Query: 796 ccttggatggaccagaagaagttgaatgtaacaaatttggaaactggtctgcacagccca 855 | ||||||| || |||||| | ||||||| |||| | |||||||||||||| ||| | Sbjct: 749 ctctggatggcccggaagaaatagaatgtaccaaactgggaaactggtctgccatgccaa 808 Query: 856 gctgtaaagcatcttgtaaattatctgtgaaaagagctactgtgatatatgaaggagaga 915 | ||||||||||||||||||||| ||||||||| ||| |||||| | || ||||||||| Sbjct: 809 gttgtaaagcatcttgtaaattacctgtgaaaaaagccactgtggtgtaccaaggagaga 868 Query: 916 gagtcaatatccaagataaatttaaagaatggaatgctgcatggcccaaaaaatttcttt 975 |||| || || || || |||||| |||||||||||||| ||||| | ||| ||||||| Sbjct: 869 gagtaaagattcaggaaaaattt-aagaatggaatgctacatgg-tgataaagtttcttt 926 Query: 976 cttctgcaagaataagg 992 ||||||||| ||||||| Sbjct: 927 cttctgcaaaaataagg 943 >gnl|UG|Ssc#S6087607 IIU602653765.R1 CSEQFXL11 pig liver Sus scrofa cDNA, mRNA sequence /gb=BM659196 /gi=18961693 /ug=Ssc.10442 /len=442 Length = 442 Score = 389 bits (196), Expect = e-106 Identities = 210/212 (99%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 781 gccatgacacttacaccttggatggaccagaagaagttgaatgtaacaaatttggaaact 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 gccatgacacttacaccttggatggaccagaagaagttgaatgtaacaaatttggaaact 383 Query: 841 ggtctgcacagcccagctgtaaagcatcttgtaaattatctgtgaaaagagctactgtga 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 ggtctgcacagcccagctgtaaagcatcttgtaaattatctgtgaaaagagctactgtga 323 Query: 901 tatatgaaggagagagagtcaatatccaagataaatttaaagaatggaatgctgcatggc 960 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 322 tatatgaaggagagagagtcaatatccaagataaatttaa-gaatggaatgctgcatggc 264 Query: 961 ccaaaaaatttctttcttctgcaagaataagg 992 | |||||||||||||||||||||||||||||| Sbjct: 263 c-aaaaaatttctttcttctgcaagaataagg 233 >gnl|UG|Mm#S9631133 Mus musculus apolipoprotein H (Apoh), mRNA /cds=(32,1069) /gb=NM_013475 /gi=7304898 /ug=Mm.2266 /len=1165 Length = 1165 Score = 133 bits (67), Expect = 2e-29 Identities = 139/163 (85%) Strand = Plus / Plus Query: 229 cctgccagccggggtacgtgtcccggggagggatccggcggtttatctgcccgctcacag 288 ||||| |||| || ||||||||| |||||||||| | ||||||| ||| || ||||||| Sbjct: 180 cctgcaagccaggctacgtgtccaggggagggatgagacggtttacctgtcctctcacag 239 Query: 289 gactttggcccatcaacactctgaaatgtctacccagagtatgtccttttgctggaatct 348 || | |||||||||||||| |||| |||| | ||||||||||||||||| |||||||||| Sbjct: 240 gaatgtggcccatcaacaccctgagatgtgtccccagagtatgtcctttcgctggaatct 299 Query: 349 tagaaaacggagctgtacgctatacaacttttgagtatcccaa 391 ||||||| ||| ||||||||| || | |||||| |||||||| Sbjct: 300 tagaaaatggaattgtacgctacacgagttttgaatatcccaa 342 Score = 71.9 bits (36), Expect = 5e-11 Identities = 147/184 (79%) Strand = Plus / Plus Query: 642 tgcacagaacatggaaattggactgaattaccagaatgtaaggaagtaaaatgcccattc 701 ||||||||||| ||||| ||||| ||| |||||||| |||||||||||| || ||| Sbjct: 593 tgcacagaacaaggaaactggacccgattgccagaatgcctggaagtaaaatgtcccttc 652 Query: 702 ccatcaagaccagaaaacggatttgtgaactatcctgcaaagcaagttctttattaccag 761 || | || |||||||| || | |||||| ||||||||||||| || ||| || || Sbjct: 653 cctccgaggccagaaaatgggtatgtgaattatcctgcaaagccggtgcttctatataag 712 Query: 762 gataaagccacatatggttgccatgacacttacaccttggatggaccagaagaagttgaa 821 ||||||||||||| |||||||||||| || |||| |||| || |||||||||| ||| Sbjct: 713 gataaagccacatttggttgccatgagacatacaagctggacggcccagaagaagcggaa 772 Query: 822 tgta 825 |||| Sbjct: 773 tgta 776 >gnl|UG|Hs#S4621002 Homo sapiens mRNA for FLJ00273 protein. /cds=(1501,1935) /gb=AK090398 /gi=21748483 /ug=Hs.148250 /len=5703 Length = 5703 Score = 38.2 bits (19), Expect = 0.76 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 tttcctgagttttctctgc 122 ||||||||||||||||||| Sbjct: 434 tttcctgagttttctctgc 452 >gnl|UG|Hs#S4298538 UI-CF-EN1-add-o-04-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone UI-CF-EN1-add-o-04-0-UI 3', mRNA sequence /clone=UI-CF-EN1-add-o-04-0-UI /clone_end=3' /gb=BM980578 /gi=19602183 /ug=Hs.424591 /len=794 Length = 794 Score = 36.2 bits (18), Expect = 3.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 616 caatgtttggaaatggta 633 |||||||||||||||||| Sbjct: 111 caatgtttggaaatggta 128 >gnl|UG|Hs#S4359402 UI-1-BB1p-axv-e-01-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-axv-e-01-0-UI 3', mRNA sequence /clone=UI-1-BB1p-axv-e-01-0-UI /clone_end=3' /gb=BQ025649 /gi=19760928 /ug=Hs.344829 /len=946 Length = 946 Score = 36.2 bits (18), Expect = 3.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 104 tttcctgagttttctctg 121 |||||||||||||||||| Sbjct: 555 tttcctgagttttctctg 538 >gnl|UG|Hs#S4613244 Homo sapiens cDNA FLJ40915 fis, clone UTERU2005450. /gb=AK098234 /gi=21758205 /ug=Hs.207079 /len=2739 Length = 2739 Score = 36.2 bits (18), Expect = 3.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 101 ctttttcctgagttttctctgc 122 ||||||| |||||||||||||| Sbjct: 1999 ctttttcatgagttttctctgc 2020 >gnl|UG|Hs#S1729109 Homo sapiens CD163 antigen (CD163), mRNA /cds=(102,3572) /gb=NM_004244 /gi=19923275 /ug=Hs.74076 /len=4950 Length = 4950 Score = 36.2 bits (18), Expect = 3.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 842 gtctgcacagcccagctg 859 |||||||||||||||||| Sbjct: 2699 gtctgcacagcccagctg 2682 >gnl|UG|Hs#S2652230 Homo sapiens cDNA FLJ14134 fis, clone MAMMA1002708. /gb=AK024196 /gi=10436517 /ug=Hs.57932 /len=1727 Length = 1727 Score = 36.2 bits (18), Expect = 3.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 101 ctttttcctgagttttctctgc 122 ||||||| |||||||||||||| Sbjct: 987 ctttttcatgagttttctctgc 1008 Database: UniGene(Bt+Hs+Ssc+Mm) Posted date: May 6, 2003 5:18 PM Number of letters in database: 241,976,893 Number of sequences in database: 230,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 136597 Number of Sequences: 230285 Number of extensions: 136597 Number of successful extensions: 10341 Number of sequences better than 10.0: 18 length of query: 1004 length of database: 241,976,893 effective HSP length: 19 effective length of query: 985 effective length of database: 237,601,478 effective search space: 234037455830 effective search space used: 234037455830 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)