Search to UniGene2 database
Query= 20030531C-000451 (20030531C-000451) 20030531C-000451
(1193 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Bt#S12029085 BS320027000D10 Subtracted Lewin Cattle Sple... 323 1e-86
Alignment gnl|UG|Hs#S1730482 Homo sapiens CD3D antigen, delta polypeptide... 226 2e-57
Alignment gnl|UG|Mm#S8081946 Mus musculus CD3 antigen, delta polypeptide ... 113 2e-23
Alignment gnl|UG|Ssc#S14765685 CMD19_D05_43 UMNMPM3 Sus scrofa cDNA clone... 46 0.004
Alignment gnl|UG|Hs#S1729148 Homo sapiens neurexin 3 (NRXN3), transcript ... 40 0.23
Alignment gnl|UG|Ssc#S6023846 200834 MARC 2PIG Sus scrofa cDNA 3', mRNA s... 40 0.23
Alignment gnl|UG|Bt#S14861266 696577 MARC 6BOV Bos taurus cDNA 5', mRNA s... 40 0.23
Alignment gnl|UG|Hs#S2140043 Homo sapiens CGI-40 protein (CGI-40), mRNA /... 38 0.91
Alignment gnl|UG|Hs#S4623302 Homo sapiens mRNA; cDNA DKFZp313H0718 (from ... 38 0.91
Alignment gnl|UG|Hs#S1728341 Homo sapiens CD3G antigen, gamma polypeptide... 38 0.91
>gnl|UG|Bt#S12029085 BS320027000D10 Subtracted Lewin Cattle Spleen
Bos taurus cDNA clone BS320027000D10 5', mRNA sequence
/clone=BS320027000D10 /clone_end=5' /gb=BM366492
/gi=18109863 /ug=Bt.6850 /len=613
Length = 613
Score = 323 bits (163), Expect = 1e-86
Identities = 284/323 (87%), Gaps = 1/323 (0%)
Strand = Plus / Plus
Query: 388 ttctgcaagtatattatcgaatgtgccagaactgcgtggagctggactcagctaccctgg 447
||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 291 ttctgcaagtatactatcgaatgtgccagaactgtgtggagctggacacagccaccctgg 350
Query: 448 caggcatcattgtcaccgacatcatcgccactctgctcctcgctttgggagtctactgct 507
||||||| || ||||||||||||| |||||| ||||||| |||||||| ||||||||||
Sbjct: 351 caggcatgatcatcaccgacatcattgccactgtgctccttgctttgggtgtctactgct 410
Query: 508 ttgctggacacgagatgggaaggttctctagggctgctgacactcaagatttgttgagga 567
|||||||||| |||| ||||| ||||| ||||||||||||||||||| | || || |||
Sbjct: 411 ttgctggacatgagactggaagattctccagggctgctgacactcaagctctgatgggga 470
Query: 568 atgaccagctctatcagccccttcgagatcggaatgatggtcagtacagtcgtcttggtg 627
||||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct: 471 atgaccaactctatcagccccttcgagagcgcaatgatgctcagtacagtcgtcttggtg 530
Query: 628 agaactgggctcggaacaagtaaacctgtgactggtggcttctaggtgcatctgttaccg 687
| || |||||||||||||| | |||||| ||||||||||||||| |||| |||| |
Sbjct: 531 ataagtgggctcggaacaaatgaacctgatgctggtggcttctaggcccatcagttatca 590
Query: 688 act-caacttctctccttgctca 709
||| | ||||||||||||||||
Sbjct: 591 actggaccttctctccttgctca 613
Score = 105 bits (53), Expect = 5e-21
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 96 gtgacctgggtctgtctactggatgaactctgctggaagatggaacatagcaggtttctg 155
|||||||| |||||||| ||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 8 gtgacctgtgtctgtctcctggatgaattctgctgggagatggagcacagcaggtttctc 67
Query: 156 tctggcctgatactggctgcgtttctctcccgagtga 192
||| |||||||||||||||| ||||||||| |||||
Sbjct: 68 tcttgcctgatactggctgcccttctctcccaagtga 104
Score = 54.0 bits (27), Expect = 2e-05
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 243 tgcaataccagcatcatatggctacaaggaacagaagga 281
|||||| ||||||||| || |||||||||||||||||||
Sbjct: 155 tgcaattccagcatcacattgctacaaggaacagaagga 193
>gnl|UG|Hs#S1730482 Homo sapiens CD3D antigen, delta polypeptide
(TiT3 complex) (CD3D), mRNA /cds=(1,516) /gb=NM_000732
/gi=4502668 /ug=Hs.95327 /len=516
Length = 516
Score = 226 bits (114), Expect = 2e-57
Identities = 222/258 (86%)
Strand = Plus / Plus
Query: 391 tgcaagtatattatcgaatgtgccagaactgcgtggagctggactcagctaccctggcag 450
||||||| |||||||||||||||||| ||| ||||||||||| |||| ||| |||| |
Sbjct: 257 tgcaagttcattatcgaatgtgccagagctgtgtggagctggatccagccaccgtggctg 316
Query: 451 gcatcattgtcaccgacatcatcgccactctgctcctcgctttgggagtctactgctttg 510
||||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||||
Sbjct: 317 gcatcattgtcactgatgtcattgccactctgctccttgctttgggagtcttctgctttg 376
Query: 511 ctggacacgagatgggaaggttctctagggctgctgacactcaagatttgttgaggaatg 570
||||||| |||| |||||| | ||| ||||||| ||||| |||| | ||||||||||||
Sbjct: 377 ctggacatgagactggaaggctgtctggggctgccgacacacaagctctgttgaggaatg 436
Query: 571 accagctctatcagccccttcgagatcggaatgatggtcagtacagtcgtcttggtgaga 630
||||| ||||||||||||| |||||||| |||||| ||||||||| | ||||| | |
Sbjct: 437 accaggtctatcagcccctccgagatcgagatgatgctcagtacagccaccttggaggaa 496
Query: 631 actgggctcggaacaagt 648
||||||||||||||||||
Sbjct: 497 actgggctcggaacaagt 514
Score = 105 bits (53), Expect = 5e-21
Identities = 110/129 (85%)
Strand = Plus / Plus
Query: 135 atggaacatagcaggtttctgtctggcctgatactggctgcgtttctctcccgagtgagc 194
||||||||||||| |||||| ||||||||| |||||||| | ||||||| | |||||||
Sbjct: 1 atggaacatagcacgtttctctctggcctggtactggctacccttctctcgcaagtgagc 60
Query: 195 ccctatgaggtagaaatggaggaacttgaggacaaagtgtttgtgagttgcaataccagc 254
|||| || || || |||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 61 cccttcaagatacctatagaggaacttgaggacagagtgtttgtgaattgcaataccagc 120
Query: 255 atcatatgg 263
|||| ||||
Sbjct: 121 atcacatgg 129
Score = 58.0 bits (29), Expect = 1e-06
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 306 gacctgggaaaacgcatcctggatccaagaggattatataagtgcaatg 354
||||||||||||||||||||||| ||| ||||| |||||| ||| ||||
Sbjct: 175 gacctgggaaaacgcatcctggacccacgaggaatatataggtgtaatg 223
>gnl|UG|Mm#S8081946 Mus musculus CD3 antigen, delta polypeptide
(Cd3d), mRNA /cds=(1,522) /gb=NM_013487 /gi=7304950
/ug=Mm.4527 /len=522
Length = 522
Score = 113 bits (57), Expect = 2e-23
Identities = 207/257 (80%)
Strand = Plus / Plus
Query: 391 tgcaagtatattatcgaatgtgccagaactgcgtggagctggactcagctaccctggcag 450
||||||| |||| ||||||||||||||||| |||||||| ||||| | ||| |||| |
Sbjct: 257 tgcaagtccattaccgaatgtgccagaactgtgtggagctagactcgggcaccatggctg 316
Query: 451 gcatcattgtcaccgacatcatcgccactctgctcctcgctttgggagtctactgctttg 510
| |||| ||| ||| ||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 317 gtgtcatcttcattgacctcatcgcaactctgctcctggctttgggcgtctactgctttg 376
Query: 511 ctggacacgagatgggaaggttctctagggctgctgacactcaagatttgttgaggaatg 570
| ||||| |||| |||||| ||| |||||||||| ||||| || ||| |||||
Sbjct: 377 caggacatgagaccggaaggccttctggggctgctgaggttcaagcactgctgaagaatg 436
Query: 571 accagctctatcagccccttcgagatcggaatgatggtcagtacagtcgtcttggtgaga 630
| ||||| |||||||| ||||||||||| | ||| |||||||| |||||||| | ||
Sbjct: 437 agcagctgtatcagcctcttcgagatcgtgaagatacccagtacagccgtcttggaggga 496
Query: 631 actgggctcggaacaag 647
||||| | |||||||||
Sbjct: 497 actggccccggaacaag 513
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 221 tgaggacaaagtgtttgtgagttgcaataccagcatcat 259
|||||||||||| ||||||| |||||||||||| ||||
Sbjct: 87 tgaggacaaagtatttgtgacctgcaataccagcgtcat 125
>gnl|UG|Ssc#S14765685 CMD19_D05_43 UMNMPM3 Sus scrofa cDNA clone
PPSUBLIB_05D05 5', mRNA sequence /clone=PPSUBLIB_05D05
/clone_end=5' /gb=CB285528 /gi=28576482 /ug=Ssc.6780
/len=622
Length = 622
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 393 caagtatattatcgaatgtgccagaactgcgtggagctg 431
|||||||||||| ||||||| ||||||||| | ||||||
Sbjct: 303 caagtatattatagaatgtgtcagaactgcattgagctg 341
>gnl|UG|Hs#S1729148 Homo sapiens neurexin 3 (NRXN3), transcript
variant alpha, mRNA /cds=(492,3677) /gb=NM_004796
/gi=21070968 /ug=Hs.247837 /len=4149
Length = 4149
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 992 ctttgacttccgcaccacag 1011
||||||||||||||||||||
Sbjct: 788 ctttgacttccgcaccacag 807
>gnl|UG|Ssc#S6023846 200834 MARC 2PIG Sus scrofa cDNA 3', mRNA
sequence /clone_end=3' /gb=BE749789 /gi=10163781
/ug=Ssc.3778 /len=518
Length = 518
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1155 ttctgctaaggggctgggcc 1174
||||||||||||||||||||
Sbjct: 134 ttctgctaaggggctgggcc 153
>gnl|UG|Bt#S14861266 696577 MARC 6BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=CB445323 /gi=29236240
/ug=Bt.13934 /len=719
Length = 719
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 567 aatgaccagctctatcagcccctt 590
|||||||||||||| |||||||||
Sbjct: 116 aatgaccagctctaccagcccctt 139
>gnl|UG|Hs#S2140043 Homo sapiens CGI-40 protein (CGI-40), mRNA
/cds=(84,2621) /gb=NM_015996 /gi=7705756 /ug=Hs.33724
/len=3146
Length = 3146
Score = 38.2 bits (19), Expect = 0.91
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 466 acatcatcgccactctgctcctc 488
||||||||||||| |||||||||
Sbjct: 2068 acatcatcgccaccctgctcctc 2090
>gnl|UG|Hs#S4623302 Homo sapiens mRNA; cDNA DKFZp313H0718 (from clone
DKFZp313H0718) /gb=AL832066 /gi=21732607 /ug=Hs.15611
/len=4930
Length = 4930
Score = 38.2 bits (19), Expect = 0.91
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 799 cctttgccctccctgccca 817
|||||||||||||||||||
Sbjct: 4188 cctttgccctccctgccca 4206
>gnl|UG|Hs#S1728341 Homo sapiens CD3G antigen, gamma polypeptide
(TiT3 complex) (CD3G), mRNA /cds=(38,586) /gb=NM_000073
/gi=4557428 /ug=Hs.2259 /len=822
Length = 822
Score = 38.2 bits (19), Expect = 0.91
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 567 aatgaccagctctatcagcccct 589
|||||||||||||| ||||||||
Sbjct: 503 aatgaccagctctaccagcccct 525
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199061
Number of Sequences: 230285
Number of extensions: 199061
Number of successful extensions: 15128
Number of sequences better than 10.0: 22
length of query: 1193
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1174
effective length of database: 237,601,478
effective search space: 278944135172
effective search space used: 278944135172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)