>20030531C-000510 (20030531C-000510) 20030531C-000510 AGCTTTTTTG CGAGAGCCGC TGGATCAGCC GGACGTCCCC AGGCCCTGGC CATGCGGCTC CTGCTACTTC TGGCCCCACT GGGCTGGCTG CTTCTGACCG AAACGAAGGG TGACGCCAAA CCGGAGGACA ACCTCTTGGT GCTCACGGTG GCCACGAAGG AGACCGAGGG GTTCCGACGC TTCAAGCGCT CAGCCCAGTT CTTCAACTAC AAGATCCAGG CGCTGGGGCT GGGGGAGGAC TGGAATGAGA AGGAGGCATC GTCGGGTGGA GGGCTGAAGG TTCGGCTGCT GAAGAAAGCC CTGGAAAAGC ATGCAGACGA GAACCTGGTC ATTCTCTTCA CAGACAGCTA TGACGTGGTG TTTGCCTCCG GGCCCCGAGA GCTGCTGAAG AAGTTCCGGC AGGCCAAGAG CCAGGTGGTC TTCTCAGCAG AGGAGCTCAT CTACCCGGAC CGCAGGCTGG AGGCCAAGTA CCCGGCCGTC TCCGACGGCA AGAGGTTCCT GGGCTCTGGA GGCTTCATTG GTTATGCCCC CAACCTCAGC AAACTGGTGG CTGAGTGGGA GGGTCAGGAC AGCGACAGCG ACCAACTCTT TTATACCAAG ATATTCTTGG ACCCGGAGAA GAGGGAGCGG ATCAATATCA CCTTGGACCA CCGCTGCCGT ATCTTCCAGA ATCTGGATGG AGCCTTGGAT GAGGTTGTGC TCAAGTTCGA GATGGGCCAA GTGAGAGCGA GGAACCTGGC CTACGACACC CTCCCGGTCC TGATTCACGG CAATGGGCCC ACCAAGCTGC AGCTGAACTA CCTGGGCAAC TACATCCCGC GCTTCTGGAC CTTCGAGACG GGGTGCTCCG TGTGTGATGA GGGCCTGCGC AGCCTCAAGG GCATTGGGGA TGAAGCTCTG CCCACAGTCC TGGTCGGCCT GTTCATCGAA CAGCCCACGC CGTTCCTGTC CCTGTTCTTC CAGCGGCTCC TGCGCCTCCA ATACCCCCGG AACGGATGCG GCTTTTCCTT CACACCATGA GCAGCACCAC AGGCTCTAG
Query= 20030531C-000510 (20030531C-000510) 20030531C-000510
(1039 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Bt#S12072764 Bos taurus procollagen-lysine, 2-oxoglutara... 1201 0.0
Alignment gnl|UG|Hs#S1728531 Homo sapiens procollagen-lysine, 2-oxoglutar... 1181 0.0
Alignment gnl|UG|Mm#S8042151 Mus musculus procollagen-lysine, 2-oxoglutar... 745 0.0
Alignment gnl|UG|Hs#S1731193 Homo sapiens procollagen-lysine, 2-oxoglutar... 50 2e-04
Alignment gnl|UG|Mm#S8042153 Mus musculus procollagen-lysine, 2-oxoglutar... 42 0.051
Alignment gnl|UG|Mm#S9104935 Mus musculus RIKEN cDNA 1500026D16 gene (150... 40 0.20
Alignment gnl|UG|Mm#S9764684 BB673138 RIKEN full-length enriched, 15 days... 40 0.20
Alignment gnl|UG|Mm#S11063779 Mus musculus, Similar to zinc finger protei... 38 0.79
Alignment gnl|UG|Mm#S8040060 Mus musculus neuronal pentraxin 1 (Nptx1), m... 38 0.79
Alignment gnl|UG|Hs#S3379665 602415422F1 NIH_MGC_92 Homo sapiens cDNA clo... 36 3.1
>gnl|UG|Bt#S12072764 Bos taurus procollagen-lysine, 2-oxoglutarate
5-dioxygenase precursor (PLOD), mRNA /cds=(184,2364)
/gb=NM_174148 /gi=27806476 /ug=Bt.4998 /len=3082
Length = 3082
Score = 1201 bits (606), Expect = 0.0
Identities = 925/1028 (89%), Gaps = 5/1028 (0%)
Strand = Plus / Plus
Query: 9 tgcgagagccgctggatcagccggacgtccccaggccctggccatgcggctcctgctact 68
|||||| ||||||||| | || |||||| ||||| ||| |||||||||||||||| ||
Sbjct: 141 tgcgagcgccgctggaccggctggacgttcccagaccccaaccatgcggctcctgctgct 200
Query: 69 tctggccccactgggctggctgcttctgaccgaaacgaagggtgacgccaaaccggagga 128
|||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 201 cctggccccgttgggctggctgcttctagccgaaacgaagggtgacgccaagccggagga 260
Query: 129 caacctcttggtgctcacggtggccacgaaggagaccgaggggttccgacgcttcaagcg 188
|||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 261 caaccttttggtcctcactgtggctacgaaggagaccgaggggttccgacgctttaagcg 320
Query: 189 ctcagcccagttcttcaactacaagatccaggcgctggggctgggggaggactggaatga 248
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ctcagctcagttcttcaactacaagatccaggcgctggggctgggggaggactggcctgg 380
Query: 249 gaaggaggcatcgtcgggtggagggctgaaggttcggctgctgaagaaagccctggaaaa 308
| ||| | | | | || || ||||||||||| ||||| |||||||||||||||| ||
Sbjct: 381 ggaggcgatgttggcaggcggtgggctgaaggtccggctattgaagaaagccctggagaa 440
Query: 309 gcatgcagac---gagaacctggtcattctcttcacagacagctatgacgtggtgtttgc 365
||| || ||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 441 gcacgccgacaaggagaacctggtcattctcttcacagacagctatgatgtggtatttgc 500
Query: 366 ctccgggccccgagagctgctgaagaagttccggcaggccaagagccaggtggtcttctc 425
||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ctcggggccccgagagctcctgaagaagttccggcaggccaggagccaggtggtcttctc 560
Query: 426 agcagaggagctcatctacccggaccgcaggctggaggccaagtacccggccgtctccga 485
|| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 561 ggccgaggagctcatctacccggaccgcaggctggaggccaattacccggtggtgtccga 620
Query: 486 cggcaagaggttcctgggctctggaggcttcattggttatgcccccaacctcagcaaact 545
||||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||
Sbjct: 621 cggcaagaggttcctgggctctggaggcttcatcggttatgctcccaaccttatcaaact 680
Query: 546 ggtggctgagtgggagggtcaggacagcgacagcgaccaactcttttataccaagatatt 605
|||||| |||||||| || ||||||||||||||||| || |||||||| |||||||| ||
Sbjct: 681 ggtggcagagtgggaaggccaggacagcgacagcgatcagctcttttacaccaagatctt 740
Query: 606 cttggacccggagaagagggagcggatcaatatcaccttggaccaccgctgccgtatctt 665
||||||||| ||||||||||||| ||||||||||||| |||||||||| ||||| |||||
Sbjct: 741 cttggacccagagaagagggagcagatcaatatcaccctggaccaccgttgccgaatctt 800
Query: 666 ccagaatctggatggagccttggatgaggttgtgctcaagttcgagatgggccaagtgag 725
||||||| | ||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 801 ccagaatttccatggagccttggatgaggtcgtgctcaagtttgaaatgggccaagtgag 860
Query: 726 agcgaggaacctggcctacgacaccctcccggtcctgattcacggcaatgggcccaccaa 785
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 861 agcgaggaacctggcctacgacaccctcccagtcctgattcatggcaacgggcccaccaa 920
Query: 786 gctgcagctgaactacctgggcaactacatcccgcgcttctggaccttcgagacggggtg 845
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gctgcagctgaactacttgggcaactacatcccgcgcttctggaccttcgagacggggtg 980
Query: 846 ctccgtgtgtgatgagggcctgcgcagcctcaagggcattggggatgaagctctgcccac 905
| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 981 cgctgtgtgtgacgagggcctgcgcagcctcaagggcatcggggatgaagctctgcctgc 1040
Query: 906 agtcctggtcggcctgttcatcgaacagcccacgccgttcctgtccctgttcttccagcg 965
|| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1041 tgttctggtcggcgtgttcatcgaacagcccaccccgttcctgtccctgttcttccagcg 1100
Query: 966 gctcctgcgcctccaataccccc-ggaacggatgcggcttttccttcac-accatgagca 1023
|||| ||| |||||| ||||||| ||||| | |||||||| ||||| |||| |||||
Sbjct: 1101 gctcttgctcctccactacccccaaaaacggttcaggcttttcattcacaaccacgagca 1160
Query: 1024 gcaccaca 1031
||||||||
Sbjct: 1161 gcaccaca 1168
>gnl|UG|Hs#S1728531 Homo sapiens procollagen-lysine, 2-oxoglutarate
5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome
type VI) (PLOD), mRNA /cds=(201,2384) /gb=NM_000302
/gi=4557836 /ug=Hs.75093 /len=3115
Length = 3115
Score = 1181 bits (596), Expect = 0.0
Identities = 896/992 (90%), Gaps = 8/992 (0%)
Strand = Plus / Plus
Query: 48 ggccatgcggctcctgctacttctggccccactgggctggctgcttctgaccgaaacgaa 107
||||||||||| |||||| || ||||||| |||||||||||||| ||| ||||| ||||
Sbjct: 197 ggccatgcggcccctgctgctactggccctgctgggctggctgctgctggccgaagcgaa 256
Query: 108 gggtgacgccaaaccggaggacaacctcttggtgctcacggtggccacgaaggagaccga 167
||| |||||||| |||||||||||||| || || |||||||||||||| |||||||||||
Sbjct: 257 gggcgacgccaagccggaggacaaccttttagtcctcacggtggccactaaggagaccga 316
Query: 168 ggggttccgacgcttcaagcgctcagcccagttcttcaactacaagatccaggcgctggg 227
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 317 gggattccgtcgcttcaagcgctcagctcagttcttcaactacaagatccaggcgcttgg 376
Query: 228 gctgggggaggactggaat---gagaaggaggcatcgtcgggtggagggctgaaggttcg 284
|| ||||||||||||||| ||||||| | | ||| | |||||||||| |||||| ||
Sbjct: 377 cctaggggaggactggaatgtggagaaggggacgtcggcaggtggagggcagaaggtccg 436
Query: 285 gctgctgaagaaagccctggaaaagcatgcagac---gagaacctggtcattctcttcac 341
||||||||||||||| ||||| ||||| |||||| ||| | |||||||||||||||||
Sbjct: 437 gctgctgaagaaagctctggagaagcacgcagacaaggaggatctggtcattctcttcac 496
Query: 342 agacagctatgacgtggtgtttgcctccgggccccgagagctgctgaagaagttccggca 401
|||||||||||||||| ||||||| || |||||||| ||||| |||||||||||||||||
Sbjct: 497 agacagctatgacgtgctgtttgcatcggggccccgggagctcctgaagaagttccggca 556
Query: 402 ggccaagagccaggtggtcttctcagcagaggagctcatctacccggaccgcaggctgga 461
||||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 557 ggccaggagccaggtggtcttctctgctgaggagctcatctacccagaccgcaggctgga 616
Query: 462 ggccaagtacccggccgtctccgacggcaagaggttcctgggctctggaggcttcattgg 521
| ||||||| |||| || ||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 617 gaccaagtatccggtggtgtccgatggcaagaggttcctgggctctggaggcttcatcgg 676
Query: 522 ttatgcccccaacctcagcaaactggtggctgagtgggagggtcaggacagcgacagcga 581
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 677 ttatgcccccaacctcagcaaactggtggccgagtgggagggccaggacagcgacagcga 736
Query: 582 ccaactcttttataccaagatattcttggacccggagaagagggagcggatcaatatcac 641
|| || ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 737 tcagctgttttacaccaagatcttcttggacccggagaagagggagcagatcaatatcac 796
Query: 642 cttggaccaccgctgccgtatcttccagaatctggatggagccttggatgaggttgtgct 701
| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 797 cctggaccaccgctgccgtatcttccagaacctggatggagccttggatgaggtcgtgct 856
Query: 702 caagttcgagatgggccaagtgagagcgaggaacctggcctacgacaccctcccggtcct 761
|||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 857 caagtttgaaatgggccatgtgagagcgaggaacctggcctatgacaccctcccggtcct 916
Query: 762 gattcacggcaatgggcccaccaagctgcagctgaactacctgggcaactacatcccgcg 821
||| || ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 917 gatccatggcaacgggccaaccaagctgcagttgaactacctgggcaactacatcccgcg 976
Query: 822 cttctggaccttcgagacggggtgctccgtgtgtgatgagggcctgcgcagcctcaaggg 881
||||||||||||||| || || ||| |||||||||| || ||| ||||||||||||||||
Sbjct: 977 cttctggaccttcgaaacaggctgcaccgtgtgtgacgaaggcttgcgcagcctcaaggg 1036
Query: 882 cattggggatgaagctctgcccacagtcctggtcggcctgttcatcgaacagcccacgcc 941
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1037 cattggggatgaagctctgcccacggtcctggtcggcgtgttcatcgaacagcccacgcc 1096
Query: 942 gttcctgtccctgttcttccagcggctcctgcgcctccaataccccc-ggaacggatgcg 1000
||| |||||||||||||||||||||||||||| ||||| ||||||| | ||| |||||
Sbjct: 1097 gtttgtgtccctgttcttccagcggctcctgcggctccactacccccagaaacacatgcg 1156
Query: 1001 gcttttccttcac-accatgagcagcaccaca 1031
|||||| | ||| |||| |||||||||||||
Sbjct: 1157 acttttcatccacaaccacgagcagcaccaca 1188
>gnl|UG|Mm#S8042151 Mus musculus procollagen-lysine, 2-oxoglutarate
5-dioxygenase 1 (Plod1), mRNA /cds=(28,2214)
/gb=NM_011122 /gi=6755105 /ug=Mm.37371 /len=2891
Length = 2891
Score = 745 bits (376), Expect = 0.0
Identities = 661/754 (87%), Gaps = 4/754 (0%)
Strand = Plus / Plus
Query: 265 ggtggagggctgaaggttcggctgctgaagaaagccctggaaaagcatgcagac---gag 321
|||||||| | ||||||||||||||||||||| || ||||||||||| |||||| ||
Sbjct: 247 ggtggaggacagaaggttcggctgctgaagaaggcactggaaaagcacgcagacaaggaa 306
Query: 322 aacctggtcattctcttcacagacagctatgacgtggtgtttgcctccgggccccgagag 381
||||||| ||||||||| ||||| |||||||||||||||||||| || ||||| ||
Sbjct: 307 gacctggttattctcttcgttgacagttatgacgtggtgtttgcctcgggaccccgggaa 366
Query: 382 ctgctgaagaagttccggcaggccaagagccaggtggtcttctcagcagaggagctcatc 441
|| | |||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 367 ctcttaaagaagttccagcaggccaagagccaggtggtcttctccgcagaggagcatatc 426
Query: 442 tacccggaccgcaggctggaggccaagtacccggccgtctccgacggcaagaggttcctg 501
||||||||||| ||||||||||||||||| || | ||| ||||||||||| ||||||||
Sbjct: 427 tacccggaccggaggctggaggccaagtatcccacagtccccgacggcaagcggttcctg 486
Query: 502 ggctctggaggcttcattggttatgcccccaacctcagcaaactggtggctgagtgggag 561
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 487 ggctctggaggcttcattggttatgcccccagcctcagcaaactggtggccgagtgggaa 546
Query: 562 ggtcaggacagcgacagcgaccaactcttttataccaagatattcttggacccggagaag 621
|| |||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 547 ggccaggacagtgacagcgaccagctcttttataccaagatcttcttgaacccggagaag 606
Query: 622 agggagcggatcaatatcaccttggaccaccgctgccgtatcttccagaatctggatgga 681
||||||| |||||||||| | ||||||| |||||||| ||||||||||| |||||||||
Sbjct: 607 agggagcaaatcaatatcagcctggaccatcgctgccgaatcttccagaacctggatgga 666
Query: 682 gccttggatgaggttgtgctcaagttcgagatgggccaagtgagagcgaggaacctggcc 741
||||||||||| |||||||||||||| || |||||||| |||||||| | || ||||||
Sbjct: 667 gccttggatgaagttgtgctcaagtttgaaatgggccacgtgagagcacgaaatctggcc 726
Query: 742 tacgacaccctcccggtcctgattcacggcaatgggcccaccaagctgcagctgaactac 801
|| ||||||||||| || | |||| |||||||||||||||||||||||||||||||||
Sbjct: 727 tatgacaccctcccagtggtcgttcatggcaatgggcccaccaagctgcagctgaactac 786
Query: 802 ctgggcaactacatcccgcgcttctggaccttcgagacggggtgctccgtgtgtgatgag 861
|||||||||||||| || || |||||||||||||||||||| ||| |||||||||| |||
Sbjct: 787 ctgggcaactacattcctcgattctggaccttcgagacgggctgcaccgtgtgtgacgag 846
Query: 862 ggcctgcgcagcctcaagggcattggggatgaagctctgcccacagtcctggtcggcctg 921
||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 847 ggcctacggagcctcaagggcattggggatgaagctctccccactgtcctggtcggtgtg 906
Query: 922 ttcatcgaacagcccacgccgttcctgtccctgttcttccagcggctcctgcgcctccaa 981
||||| || |||||||| || || || ||| |||| |||| |||||| |||||||| | |
Sbjct: 907 ttcattgagcagcccacaccatttctatccttgtttttcctgcggctgctgcgcctacga 966
Query: 982 taccc-ccggaacggatgcggcttttccttcaca 1014
||||| | | ||| ||||||||| ||| ||||||
Sbjct: 967 taccctcagaaacagatgcggctcttcattcaca 1000
Score = 145 bits (73), Expect = 5e-33
Identities = 124/141 (87%)
Strand = Plus / Plus
Query: 104 cgaagggtgacgccaaaccggaggacaacctcttggtgctcacggtggccacgaaggaga 163
|||||| ||||||||| | ||||||||||| ||||| ||||| |||||||| || ||||
Sbjct: 80 cgaaggatgacgccaagctagaggacaaccttttggtcctcactgtggccacaaaagaga 139
Query: 164 ccgaggggttccgacgcttcaagcgctcagcccagttcttcaactacaagatccaggcgc 223
| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||| | |
Sbjct: 140 ctgagggcttccgccgcttcaagcgttcagctcagttcttcaactacaagatccagtcac 199
Query: 224 tggggctgggggaggactgga 244
|||| ||||||||||||||||
Sbjct: 200 tgggcctgggggaggactgga 220
>gnl|UG|Hs#S1731193 Homo sapiens procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 (PLOD3), mRNA /cds=(323,2539)
/gb=NM_001084 /gi=21361165 /ug=Hs.153357 /len=2852
Length = 2852
Score = 50.1 bits (25), Expect = 2e-04
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 778 cccaccaagctgcagctgaactacctgggcaactacatccc 818
||||| ||||||||||| ||||||||||| |||||| ||||
Sbjct: 1091 cccactaagctgcagctcaactacctgggaaactacgtccc 1131
Score = 38.2 bits (19), Expect = 0.79
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 378 agagctgctgaagaagttc 396
|||||||||||||||||||
Sbjct: 691 agagctgctgaagaagttc 709
>gnl|UG|Mm#S8042153 Mus musculus procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 (Plod3), mRNA /cds=(76,2301)
/gb=NM_011962 /gi=6755109 /ug=Mm.137885 /len=2592
Length = 2592
Score = 42.1 bits (21), Expect = 0.051
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 772 aatgggcccaccaagctgcagctgaactacctgggcaacta 812
||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 847 aatggtcccactaagctccagctcaactacctggggaacta 887
Score = 36.2 bits (18), Expect = 3.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 378 agagctgctgaagaagtt 395
||||||||||||||||||
Sbjct: 453 agagctgctgaagaagtt 470
>gnl|UG|Mm#S9104935 Mus musculus RIKEN cDNA 1500026D16 gene
(1500026D16Rik), mRNA /cds=(26,526) /gb=NM_026616
/gi=13386101 /ug=Mm.246200 /len=608
Length = 608
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 959 tccagcggctcctgcgcctc 978
||||||||||||||||||||
Sbjct: 369 tccagcggctcctgcgcctc 350
>gnl|UG|Mm#S9764684 BB673138 RIKEN full-length enriched, 15 days
embryo head Mus musculus cDNA clone 4022404I08 3', mRNA
sequence /clone=4022404I08 /clone_end=3' /gb=BB673138
/gi=15972359 /ug=Mm.226042 /len=426
Length = 426
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 304 gaaaagcatgcagacgagaa 323
||||||||||||||||||||
Sbjct: 28 gaaaagcatgcagacgagaa 9
>gnl|UG|Mm#S11063779 Mus musculus, Similar to zinc finger protein 60,
clone IMAGE:2645174, mRNA /gb=BC042662 /gi=27769260
/ug=Mm.172945 /len=4839
Length = 4839
Score = 38.2 bits (19), Expect = 0.79
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 889 gatgaagctctgcccacagtcct 911
||||||||||| |||||||||||
Sbjct: 2817 gatgaagctcttcccacagtcct 2795
>gnl|UG|Mm#S8040060 Mus musculus neuronal pentraxin 1 (Nptx1), mRNA
/cds=(229,1527) /gb=NM_008730 /gi=6679119 /ug=Mm.5142
/len=4618
Length = 4618
Score = 38.2 bits (19), Expect = 0.79
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 217 caggcgctggggctggggg 235
|||||||||||||||||||
Sbjct: 1565 caggcgctggggctggggg 1547
>gnl|UG|Hs#S3379665 602415422F1 NIH_MGC_92 Homo sapiens cDNA clone
IMAGE:4524028 5', mRNA sequence /clone=IMAGE:4524028
/clone_end=5' /gb=BG389884 /gi=13283332 /ug=Hs.440711
/len=564
Length = 564
Score = 36.2 bits (18), Expect = 3.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 717 ccaagtgagagcgaggaa 734
||||||||||||||||||
Sbjct: 341 ccaagtgagagcgaggaa 358
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155177
Number of Sequences: 230285
Number of extensions: 155177
Number of successful extensions: 12447
Number of sequences better than 10.0: 29
length of query: 1039
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1020
effective length of database: 237,601,478
effective search space: 242353507560
effective search space used: 242353507560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)