>20030531C-000521 (20030531C-000521) 20030531C-000521 AAGCCTTCCC TTTCCTCGCC TCTCGTTTCC CCCCTCCCAT CCCGTTTCCT CGGCCGCTCC GCTCCCTGGC GTGACTCGGC ACTGAGAGCC CCGGGAGAAG ACGCCACGGT CGCCACCTCC TGTGTCCAGG CCTCGGCCTT CCTGAGTCTA CCCCCGTCCC CTCCCGGGTC GTCTTCTCCT TCAGTTTTGA AACCGGTGGC GTCGCGGCCA CCTTGCCAGG CTCTCTGAGA ATGGTAGGTG TAAAGCCGGT CGGGAGTGAC CCGGATTTCC AGCCGGAGCT GAGCGGCGCG GGCTCCAGAC TCGCTGTGGT CAAATTCACC ATGCGAGGGT GTGGACCATG TTTAAGGATT GCCCCAGCAT TCAGTTCTAT GAGTAATAAG TATCCACAAG CAGTTTTCTT GGAAGTAGAT GTACATCAGT GTCAGGGAAC TGCTGCCACC AACAACATAT CAGCGACACC TACATTTTTG TTTTTCCGAA ACAAAGTGAG AATTGATCAG TATCAAGGAG CAGATGCCGT GGGATTAGAA GAAAAAATCA AGCAGCACTT AGAAAACGAC CCTGGAAGCA ATGAGGACAC AGATATTCCA AAAGGCTATA TGGATTTAAT GCCTTTTATT AACAAAGCTG GCTGTGAATG TCTTAATGAA AGTGACGAGC ATGGATTTGA CAACTGTTTA CGAAAAGACA TGACCTTCCT GGAATCTGAT TGTGATGAAC AGCTACTTAT TACTGTGGCA TTCAATCAGC CTGTTAAGCT TTACTCAATG AAATTTCAAG GGCCAGATAA TGGTCAGGGT CCTAAATATG TAAAAATTTT TATCAATCTA CCCCGATCTA TGGATTTTGA AGAGGCAGAA AGAAGCGAAC CAACTCAAGC TCTGGAACTA ACAGAGGATG ATATTAAAGA AGATGGTATT GTTCCACTTC GTTATGTTAA AGTTTCAGAA TGTTAACAG
Query= 20030531C-000521 (20030531C-000521) 20030531C-000521
(959 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S1729344 Homo sapiens thioredoxin-like, 32kDa (TXNL),... 1277 0.0
Alignment gnl|UG|Mm#S8539445 Mus musculus thioredoxin-like (Txnl), mRNA /... 918 0.0
Alignment gnl|UG|Bt#S12372634 OTM602700301.R1 CSEQFXL05 stomach-rumen Bos... 680 0.0
Alignment gnl|UG|Hs#S6119497 UI-H-EU1-baj-n-23-0-UI.s1 NCI_CGAP_Ct1 Homo ... 40 0.18
Alignment gnl|UG|Hs#S4284383 Homo sapiens mRNA for FLJ00143 protein. /cds... 40 0.18
Alignment gnl|UG|Mm#S10862158 Mus musculus 10 days neonate cerebellum cDN... 40 0.18
Alignment gnl|UG|Bt#S11933701 Bos taurus SMC1 protein (SMC1) mRNA, comple... 40 0.18
Alignment gnl|UG|Hs#S5903299 UI-E-CK0-aap-d-01-0-UI.s1 UI-E-CK0 Homo sapi... 38 0.73
Alignment gnl|UG|Hs#S2651759 Homo sapiens cDNA FLJ13655 fis, clone PLACE1... 38 0.73
Alignment gnl|UG|Hs#S2038970 hj08h10.y1 Soares_NFL_T_GBC_S1 Homo sapiens ... 38 0.73
>gnl|UG|Hs#S1729344 Homo sapiens thioredoxin-like, 32kDa (TXNL),
mRNA /cds=(206,1075) /gb=NM_004786 /gi=4759273
/ug=Hs.429366 /len=1285
Length = 1285
Score = 1277 bits (644), Expect = 0.0
Identities = 851/915 (93%), Gaps = 5/915 (0%)
Strand = Plus / Plus
Query: 48 cctcggccgctccgc-tccctggcgtgactcggcactgagagccccgggagaagacgcca 106
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 21 cctcggccgctccgcgtccctggcgtgactcggcactgagagtcccgggagaagactcgg 80
Query: 107 cggtcgccacctcctgtgtccaggcctcggccttcctgagtctacccccgtcccctcccg 166
|||||| |||||| | |||||||||||||||||||||||| | | || ||| |||||
Sbjct: 81 cggtcg-cacctcttctgtccaggcctcggccttcctgagcatctctccttcctctccca 139
Query: 167 ggtcgtcttctccttcagttttgaaaccggtggcgtcgcggccaccttgccaggctctc- 225
| ||||||||||||||||||| || || ||||||||||||||||| |||| |||||||
Sbjct: 140 gatcgtcttctccttcagtttcaaagccagtggcgtcgcggccaccctgccgggctctct 199
Query: 226 -tgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccggagctgagc 284
|||| ||||| || || ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 200 gtgaggatggtgggggtgaagcccgtcgggagcgacccggatttccagccagagctgagc 259
Query: 285 ggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggtgtggaccatgttta 344
|||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||
Sbjct: 260 ggcgcgggctccagactcgccgtggtcaagttcaccatgagagggtgtgggccatgtttg 319
Query: 345 aggattgccccagcattcagttctatgagtaataagtatccacaagcagttttcttggaa 404
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 320 aggattgccccagcattcagttctatgagtaataaatatccacaggctgttttcttggaa 379
Query: 405 gtagatgtacatcagtgtcagggaactgctgccaccaacaacatatcagcgacacctaca 464
|| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 380 gtcgatgtacatcagtgtcagggaacagctgccaccaacaatatatcagcaacacctaca 439
Query: 465 tttttgtttttccgaaacaaagtgagaattgatcagtatcaaggagcagatgccgtggga 524
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 440 tttttgttttttcgaaacaaagtgagaattgatcaatatcaaggagcagatgctgtggga 499
Query: 525 ttagaagaaaaaatcaagcagcacttagaaaacgaccctggaagcaatgaggacacagat 584
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 ttagaagaaaaaatcaagcagcacttagaaaatgaccctggaagcaatgaggacacagat 559
Query: 585 attccaaaaggctatatggatttaatgccttttattaacaaagctggctgtgaatgtctt 644
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 attccaaaaggctatatggatttaatgccttttattaacaaagctggttgtgaatgtctt 619
Query: 645 aatgaaagtgacgagcatggatttgacaactgtttacgaaaagacatgaccttcctggaa 704
||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 620 aatgaaagtgatgagcatggatttgacaactgtttacgaaaagacacaaccttcttggaa 679
Query: 705 tctgattgtgatgaacagctacttattactgtggcattcaatcagcctgttaagctttac 764
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 680 tctgactgtgatgaacagctgcttattactgtggcattcaatcaacctgttaagctttat 739
Query: 765 tcaatgaaatttcaagggccagataatggtcagggtcctaaatatgtaaaaatttttatc 824
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 740 tccatgaaatttcaagggccagataatggtcagggccctaaatatgtaaaaatttttatc 799
Query: 825 aatctaccccgatctatggattttgaagaggcagaaagaagcgaaccaactcaagctctg 884
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 800 aacctaccccgatctatggattttgaagaggcagaaagaagtgaaccaactcaagctctg 859
Query: 885 gaactaacagaggatgatattaaagaagatggtattgttccacttcgttatgttaaagtt 944
||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 860 gaactgacagaggatgatattaaagaagatggcattgttccacttcgttatgtt-aagtt 918
Query: 945 tcagaatgttaacag 959
|||||||||||||||
Sbjct: 919 tcagaatgttaacag 933
>gnl|UG|Mm#S8539445 Mus musculus thioredoxin-like (Txnl), mRNA
/cds=(16,885) /gb=NM_016792 /gi=7949155 /ug=Mm.19169
/len=1110
Length = 1110
Score = 918 bits (463), Expect = 0.0
Identities = 671/739 (90%), Gaps = 1/739 (0%)
Strand = Plus / Plus
Query: 221 ctctctgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccggagct 280
|||| |||| ||||| || || |||||||||||||| || || |||||||||||||||||
Sbjct: 6 ctctgtgaggatggtgggagtgaagccggtcgggagcgatccagatttccagccggagct 65
Query: 281 gagcggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggtgtggaccatg 340
|||||| |||||||||||||| || |||||||| ||||||||| ||||||||||||| ||
Sbjct: 66 gagcggggcgggctccagacttgccgtggtcaagttcaccatgagagggtgtggaccgtg 125
Query: 341 tttaaggattgccccagcattcagttctatgagtaataagtatccacaagcagttttctt 400
| | |||||||||| || ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 126 tcttcggattgccccggcgttcagctctatgagtaataagtacccacaggcagtcttctt 185
Query: 401 ggaagtagatgtacatcagtgtcagggaactgctgccaccaacaacatatcagcgacacc 460
|||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 186 ggaagtagatgtgcatcagtgccagggaacagctgccaccaacaacatatcagcaacacc 245
Query: 461 tacatttttgtttttccgaaacaaagtgagaattgatcagtatcaaggagcagatgccgt 520
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 246 tacgtttttgttttttcgaaacaaagtgagaatcgatcagtatcaaggagcagatgctgt 305
Query: 521 gggattagaagaaaaaatcaagcagcacttagaaaacgaccctggaagcaatgaggacac 580
|||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct: 306 gggactagaagagaaaatcaagcagcacttagaaaatgatcctggaagcaatgaggacgc 365
Query: 581 agatattccaaaaggctatatggatttaatgccttttattaacaaagctggctgtgaatg 640
||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 366 agacattcccaagggctatatggatttaatgccttttattaacaaagctggttgtgaatg 425
Query: 641 tcttaatgaaagtgacgagcatggatttgacaactgtttacgaaaagacatgaccttcct 700
||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||| |
Sbjct: 426 tcttaatgaaagtgatgagcacggctttgacaactgtttacgaaaagacatgtccttctt 485
Query: 701 ggaatctgattgtgatgaacagctacttattactgtggcattcaatcagcctgttaagct 760
||| ||||| |||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct: 486 ggagtctgactgtgatgagcaactccttattactgtggcattcaatcagcctgttaagct 545
Query: 761 ttactcaatgaaatttcaagggccagataatggtcagggtcctaaatatgtaaaaatttt 820
||| || ||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 546 ttattccatgaagtttcaaggaccagataacggtcagggtcctaaatatgtaaaaatttt 605
Query: 821 tatcaatctaccccgatctatggattttgaagaggcagaaagaagcgaaccaactcaagc 880
|||||| ||||||||||||||||||||||| ||||| ||||| || || |||||||||||
Sbjct: 606 tatcaacctaccccgatctatggattttgaggaggcggaaaggagtgagccaactcaagc 665
Query: 881 tctggaactaacagaggatgatattaaagaagatggtattgttccacttcgttatgttaa 940
||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 666 tctggaactgacagaagatgacattaaagaagatggcattgttcctcttcgttatgttaa 725
Query: 941 agtttcagaatgttaacag 959
| ||||||||||| |||||
Sbjct: 726 a-tttcagaatgtcaacag 743
>gnl|UG|Bt#S12372634 OTM602700301.R1 CSEQFXL05 stomach-rumen Bos
taurus cDNA, mRNA sequence /gb=CB167998 /gi=28154123
/ug=Bt.9716 /len=862
Length = 862
Score = 680 bits (343), Expect = 0.0
Identities = 449/479 (93%), Gaps = 4/479 (0%)
Strand = Plus / Minus
Query: 483 aaagtgagaattgatcagtatcaaggagcagatgccgtgggattagaagaaaaaatcaag 542
|||||||||||||||||||||||||| | ||||| |||| | |||| ||||||||||||
Sbjct: 862 aaagtgagaattgatcagtatcaagggaccgatgctgtgg-actagaggaaaaaatcaag 804
Query: 543 cagcactt-agaaaacgaccctggaagcaatgaggacacagatattccaaaaggctatat 601
|||||||| ||| ||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 803 cagcactttagagaacgaccctgggagcaacgaggacaccgatattccgaaaggctatat 744
Query: 602 ggatttaatgccttttattaacaaagctggctgtgaatgtcttaatgaaagtgacgagca 661
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 743 ggatttaatgccttttattaacaaagctggctgtgaatgtctgaatgaaagtgatgagca 684
Query: 662 tggatttgacaactgtttacgaaaagacatgaccttcctggaatctgattgtgatgaaca 721
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 683 tggatttgacaactgtttgcgaaaagacatgaccttcttggaatctgattgtgatgaaca 624
Query: 722 gctacttattactgtggcattcaatcagcctgttaagctttactcaatgaaatttcaagg 781
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 623 gcttcttattactgtggcattcaatcagcctgttaagctttattcaatgaaatttcaagg 564
Query: 782 gccagataatggtcagggtcctaaatatgtaaaaatttttatcaatctaccccgatctat 841
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 563 gccagataacggtcagggtcctaaatacgtaaaaatttttatcaatctaccgcgatctat 504
Query: 842 ggattttgaagaggcagaaagaagcgaaccaactcaagctctggaactaacagaggatga 901
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 503 ggattttgaagaggcagaaagaagtgagccaactcaagctctggaactaacagaggatga 444
Query: 902 ta-ttaaagaagatggtattgttccacttcgttatgttaaagtttcagaatgttaacag 959
|| ||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||
Sbjct: 443 tagttaaagaagatggtattgtccctcttcgttacgttaa-gtttcagaacgttaacag 386
>gnl|UG|Hs#S6119497 UI-H-EU1-baj-n-23-0-UI.s1 NCI_CGAP_Ct1 Homo
sapiens cDNA clone UI-H-EU1-baj-n-23-0-UI 3', mRNA
sequence /clone=UI-H-EU1-baj-n-23-0-UI /clone_end=3'
/gb=CA414219 /gi=24776870 /ug=Hs.420564 /len=748
Length = 748
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 800 tcctaaatatgtaaaaattt 819
||||||||||||||||||||
Sbjct: 359 tcctaaatatgtaaaaattt 378
>gnl|UG|Hs#S4284383 Homo sapiens mRNA for FLJ00143 protein.
/cds=(1,1122) /gb=AK074072 /gi=18676491 /ug=Hs.194478
/len=5496
Length = 5496
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tccaggcctcggccttcctg 144
||||||||||||||||||||
Sbjct: 4977 tccaggcctcggccttcctg 4996
>gnl|UG|Mm#S10862158 Mus musculus 10 days neonate cerebellum cDNA,
RIKEN full-length enriched library, clone:B930056C04
product:unclassifiable, full insert sequence.
/gb=AK047402 /gi=26092149 /ug=Mm.208705 /len=3257
Length = 3257
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 212 cttgccaggctctctgagaa 231
||||||||||||||||||||
Sbjct: 408 cttgccaggctctctgagaa 389
>gnl|UG|Bt#S11933701 Bos taurus SMC1 protein (SMC1) mRNA, complete
cds /cds=(1,3702) /gb=AF072712 /gi=4235252 /ug=Bt.217
/len=3702
Length = 3702
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 922 ttccacttcgttatgttaaagttt 945
||||||||||||||| ||||||||
Sbjct: 702 ttccacttcgttatgataaagttt 679
>gnl|UG|Hs#S5903299 UI-E-CK0-aap-d-01-0-UI.s1 UI-E-CK0 Homo sapiens
cDNA clone UI-E-CK0-aap-d-01-0-UI 3', mRNA sequence
/clone=UI-E-CK0-aap-d-01-0-UI /clone_end=3' /gb=BU726096
/gi=23645607 /ug=Hs.442828 /len=1130
Length = 1130
Score = 38.2 bits (19), Expect = 0.73
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 800 tcctaaatatgtaaaaatt 818
|||||||||||||||||||
Sbjct: 284 tcctaaatatgtaaaaatt 266
>gnl|UG|Hs#S2651759 Homo sapiens cDNA FLJ13655 fis, clone
PLACE1011503. /gb=AK023717 /gi=10435732 /ug=Hs.399853
/len=2950
Length = 2950
Score = 38.2 bits (19), Expect = 0.73
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 456 acacctacatttttgtttt 474
|||||||||||||||||||
Sbjct: 416 acacctacatttttgtttt 434
>gnl|UG|Hs#S2038970 hj08h10.y1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA
clone IMAGE:2981251 5', mRNA sequence
/clone=IMAGE:2981251 /clone_end=5' /gb=BE041827
/gi=8358880 /ug=Hs.274837 /len=412
Length = 412
Score = 38.2 bits (19), Expect = 0.73
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 389 agcagttttcttggaagta 407
|||||||||||||||||||
Sbjct: 250 agcagttttcttggaagta 268
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153575
Number of Sequences: 230285
Number of extensions: 153575
Number of successful extensions: 11317
Number of sequences better than 10.0: 27
length of query: 959
length of database: 241,976,893
effective HSP length: 19
effective length of query: 940
effective length of database: 237,601,478
effective search space: 223345389320
effective search space used: 223345389320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)