>20030531C-003184 (20030531C-003184) 20030531C-003184 CGCGAGCGGC GCGAGGGGAC AGGGCCGCAC GGGTCCCAGG TCCCGGGGTG GCCTGTGCAC CCAAGTTTCC CTTGCGCCGC GCTTCCTGAT GTGGCCGAAG ACGTGATTGG AAGCGCCGGC GGCCGCCCGC GGACGATGCT CGGGTTTCTG GGTGCGACGA CCCTGATGCT GGTCGCTGGG GCTCCGTGGG TGTTGCCCGC AGGGGGTGCA GATCTCAGAT CTCCTGAAAA TGTCGTGGTC TCTATCATTG ATGACAACTT CATCCTGAAA TGGAAGAGCA GCAGTGAATC CGTCAGCAAT GTGACTTTTT CAGCAGATTA TCAAATAACA GGGATGGATA ATTGGATAAA GTTGCCTGGA TGTCAATATG TTACTAGCAC TGAATGCAAC TTTTCTTCCA TCAAGCTTAA AAGCGTGTAT GAAAAAATTA AATTGCGTAT AAGAGCAGAA ACAGGAAACA GCACTTCTCC GTGGTATGAG GTTGAGCCGT TTATACCATT TCAAGAAGCA CAAATTGGCC CTCCAGATGT ACATTTAGAA GCCGAAGATA AAGCAATAAT AATAAACCTC TCTCCTCCTG GCACAAAAAA CAGTGTCATG TGGGCTATGG ATAGTTCAAG TTTCGTGTAT AGCTTAGTAA TCTGGAAAAA CTCTTCAAGT CTAGAAGAAA GGACTAAAAC TGTTTATGCC AGAGATAAAA TTCACCAACT CTCACCAGAG ACAACTTACT GTTTAAAAGT TAAAGCCGGA CTCCGTTCGC CAAGAAAAGT CGGTGTCTAC AGTCCAGTGT ATTGTATAAA TACCACAGTG AAACATCACC TGCCTTCACC AGAAAATCTA GAAATTAATG CTGAAAACCG GGTCTATGTT CTTAAATGGA ATTACACCTA TGAAAATGTG ACTTTTCAAG CTCAGTGGCT CCATGCCTTT TTAAAAAAGA TTCCTGAGGA CCATTCAGAC AAGTGGAAAC AAATACCAAA CTGTGAAAAT GTCAAAACGA CCCATTGTGT CTTTCCTCAA AATGTTTTCA CGAAAGGAAT TTTCTTCATC CGTGTCCAAG CATCTAATGG AAATAGCACA TCTCTTTGGT CCGAAGAGAA GAGATTTAAT ACTGAAATGC AAACTATCCT GTTTCCTCCC GTCATCAACA TGAAACCCAT AAATGATGCT TCACTGCGTG TCGGTATCGG TGCTCCGAAA GAATCTGAGG ACAAGTCTGT GAACCAGCTT TACCCACTAA TTTATGAAGT TATTTTTAGA GAAAACACTT CAGATACTGA GAGAGACGTT CTAGAGAAGA GAACGGATTT TACTTTCTCT AACTTGAAAC CACTGACTGT GTATTGTGTC AAAGCCAGAG CACTCATCGA GAATGACAGG TGGAATAGAA GCAGTGTTTT TAGTGACACT GTGTGCGAGA AAACCAAACC AGGAAGCACT TCCCAAGCCT GGCTTATAGC TGGAATTCTC TCGGCGATAC TTTTGTTCCC TGCTGTTTTT TATGGTGTGA AAGTCGTCTC GCGATGTATC AATTATGTGT TCTTCCCATC AAGTAAACCT CCTTCCACTA TAGATGAGTA TTTCGCTGAA CAGCCACTCA AGAATCTGCT TCTCTCCACC TCTGAAGAAC AAACCGAAAT ATGTTTCATC GTTGAAAATA CAAACACTAT TACTACAATA GAAGAGACTG ATCAAATTGA TGACAATCAC AGCAGATGCA GTTCTCAAAC GAATCGGGAT TCAGGAGTCT ATTCGAATGA AGATGAAAAC AGTGGAAGCA AAATAGGAGA AGAAATTCTG CGACAGGCAG CCGTGTGACC AGAACGCTTT AAAATCTTGG GAAGTCTATG GAACTTAACA GCAGGAGCCT GAGCTCCTTG CTTCTCTCAG TAACTCTTAA GAACGTATTT GCTTGTGGCG GAACAAAAAA GCACCTTCAG ATCATCGGTC CTCAAAATAC AGGCAAGCAC TTAACTCTTT AAAAGGAATC TGGAAAAGAG TTTGCTGTAT TCTTTTCTGT ATGGAAAGTC TTGGCCAACC TGTCATTGGA CCGGCCTTGG ATGAGAGGCA TTAAATCCCG AAGATGCCCT CCATCTTCCT GATGTCACCG CGGGTACCCT GGCACCTCTG GCTGAAGGCT GTGCTTGTGT CAGCCGGCCG ATAGCCTTGC GGTGCTGCTG CTGATGCCAC GTGTGTCATT GGTCCCTTCT CCGTCCCAGC GTCACAGTGC ATTATTCCTC CAGAGACACC CAGAACACTC AGTCTTTTTC TTGAACACTG AAGTGAGCCC TTTGGAAATG TCTTTAGAAA GGTCTGAATC CCAGCATCAC ATGGTTTTCT GAAAAGTAGC TCACTCTGGA AAACAGCCGC AGGTGCCAGA AACATGGTCC TTAACGATTT CAGGGAAATT CTATCCATTT ATCCCAGAAA CATGGTCCTT AACGATTTCA GGGAAATTCT ATCCATTTAT CCCAATTACA TCA
Query= 20030531C-003184 (20030531C-003184) 20030531C-003184
(2483 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6072746 UNL-P-FN-bf-g-04-0-UNL.s1 UNL-P-FN Sus scro... 1516 0.0
Alignment gnl|UG|Bt#S12072503 Bos taurus interferon, alpha; receptor (IFN... 817 0.0
Alignment gnl|UG|Hs#S3218922 Homo sapiens interferon (alpha, beta and ome... 424 e-117
Alignment gnl|UG|Mm#S8041773 Mus musculus interferon (alpha and beta) rec... 52 1e-04
Alignment gnl|UG|Hs#S4329900 UI-H-ED0-aww-a-10-0-UI.s1 NCI_CGAP_ED0 Homo ... 50 5e-04
Alignment gnl|UG|Mm#S10866383 Mus musculus 0 day neonate thymus cDNA, RIK... 40 0.48
Alignment gnl|UG|Hs#S1569917 Homo sapiens mRNA; cDNA DKFZp566L033 (from c... 38 1.9
Alignment gnl|UG|Hs#S5509350 UI-H-FH1-bfn-e-15-0-UI.s1 NCI_CGAP_FH1 Homo ... 38 1.9
Alignment gnl|UG|Hs#S1364377 ty62d08.x1 NCI_CGAP_Kid11 Homo sapiens cDNA ... 38 1.9
Alignment gnl|UG|Hs#S5893722 UI-CF-DU1-aaz-k-24-0-UI.s1 UI-CF-DU1 Homo sa... 38 1.9
>gnl|UG|Ssc#S6072746 UNL-P-FN-bf-g-04-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-bf-g-04-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-bf-g-04-0-UNL /clone_end=3' /gb=BI182206
/gi=14656615 /ug=Ssc.11381 /len=864
Length = 864
Score = 1516 bits (765), Expect = 0.0
Identities = 850/870 (97%), Gaps = 9/870 (1%)
Strand = Plus / Plus
Query: 119 gcggccgcccgcggacgatgctcgggtttctgggtgcgacgaccctgatgctggtcgctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggccgcccgcggacgatgctcgggtttctgggtgcgacgaccctgatgctggtcgctg 60
Query: 179 gggctccgtgggtgttgcccgcagggggtgcagatctcagatctcctgaaaatgtcgtgg 238
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggctccgtgggtgttgcccgca-ggggtgcagatctcagatctcctgaaaatgtcgtgg 119
Query: 239 tctctatcattgatgacaacttcatcctgaaatggaagagcagcagtgaatccgtcagca 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 120 tctctatcattgatgacaacttcatcctgaaatggaagagcagtagtgaatccgtcagca 179
Query: 299 atgtgactttttcagcagattatcaaataacagggatggataattggataaagttgcctg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atgtgactttttcagcagattatcaaataacagggatggataattggataaagttgcctg 239
Query: 359 gatgtcaatatgttactagcactgaatgcaacttttcttccatcaagcttaaaagcgtgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gatgtcaatatgttactagcactgaatgcaacttttcttccatcaagcttaaaagcgtgt 299
Query: 419 atgaaaaaattaaattgcgtataagagcagaaacaggaaacagcacttctccgtggtatg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgaaaaaattaaattgcgtataagagcagaaacaggaaacagcacttctccgtggtatg 359
Query: 479 aggttgagccgtttataccatttcaagaagcacaaattggccctccagatgtacatttag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggttgagccgtttataccatttcaagaagcacaaattggccctccagatgtacatttag 419
Query: 539 aagccgaagataaagcaataataataaacctctctcctcctggcacaaaaaacagtgtca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagccgaagataaagcaataataataaacctctctcctcctggcacaaaaaacagtgtca 479
Query: 599 tgtgggctatggatagttcaagtttcgtgtatagcttagtaatctggaaaaactcttcaa 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 480 tgtgggctatggatagttcaagtttcgtgtatagcttagttatctggaaaaactcttcaa 539
Query: 659 gtctagaagaaaggactaaaactgtttatgccagagataaaattcaccaactctcaccag 718
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 540 gtctagaagaaaggactaaaactgtttatgccagagataaaatttaccaactctcaccag 599
Query: 719 agacaacttactgtttaaaagttaaagccggactccgttcgccaagaaaagtcggtgtct 778
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agacaacttactgtttaagagttaaagccggactccgttcgccaagaaaagtcggtgtct 659
Query: 779 acagtccagtgtattgtataaataccacagtgaaacatcacctgccttcaccagaaaatc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acagtccagtgtattgtataaataccacagtgaaacatcacctgccttcaccagaaaatc 719
Query: 839 tagaaattaatgctgaaaaccgggtctatgttcttaaatggaattacacctatgaaaatg 898
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct: 720 tagaaattaatgctgaaaaccgggtctatgttcttaaatggaatnnc-nctatg-aaatg 777
Query: 899 tgacttttcaagctcagtggctccatgcctttttaaaaaagattcctgaggaccattcag 958
|||| |||| |||||||||||||||||| |||| ||||||| | |||||| ||||||||
Sbjct: 778 tgac-tttcnagctcagtggctccatgcntttt--aaaaaga-tnctgagggccattcag 833
Query: 959 acaagtggaaacaaataccaaactgtgaaa 988
|||||||| |||||||||| ||||||||||
Sbjct: 834 acaagtgg-aacaaatacc-aactgtgaaa 861
>gnl|UG|Bt#S12072503 Bos taurus interferon, alpha; receptor (IFNAR1),
mRNA /cds=(1,1683) /gb=NM_174552 /gi=27807000 /ug=Bt.4557
/len=1683
Length = 1683
Score = 817 bits (412), Expect = 0.0
Identities = 1038/1244 (83%), Gaps = 2/1244 (0%)
Strand = Plus / Plus
Query: 223 cctgaaaatgtcgtggtctctatcattgatgacaacttcatcctgaaatggaagagcagc 282
||||||||||||| | || |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 88 cctgaaaatgtcgagatccacatcattgatgacaattttttcctgaagtggaacagcagc 147
Query: 283 agtgaatccgtcagcaatgtgactttttcagcagattatcaaataacagggatggataat 342
||||| || |||| |||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 148 agtgagtctgtcaagaatgtgactttttcagcagattatcaaatactaggaacggataac 207
Query: 343 tggataaagttgcctggatgtcaatatgttactagcactgaatgcaacttttcttccatc 402
|||| || ||| |||| |||||| || ||||||| || |||||||||||||||| ||
Sbjct: 208 tggaagaaattgtctgggtgtcaacatattactagtaccaaatgcaacttttcttcagtc 267
Query: 403 aagcttaaaagcgtgtatgaaaaaattaaattgcgtataagagcagaaacaggaaacagc 462
||||| ||| || | |||||||||| ||||||| |||||||||||| |||||||| |
Sbjct: 268 gagcttgaaaatgtttttgaaaaaattgaattgcgcataagagcagaagaaggaaacaac 327
Query: 463 acttctccgtggtatgaggttgagccgtttataccatttcaagaagcacaaattggccct 522
||||| | ||||||||||||||||| ||| ||||||||| |||||| || ||||| ||
Sbjct: 328 acttccacatggtatgaggttgagccatttgtaccatttctagaagctcagattggtccc 387
Query: 523 ccagatgtacatttagaagccgaagataaagcaataataataaacctctctcctcctggc 582
|||||||| ||||||||||| |||||||| ||||||||| | | ||||||| |||||
Sbjct: 388 ccagatgtgcatttagaagctgaagataaggcaataatactgagtatctctccccctgga 447
Query: 583 acaaaaaacagtgtcatgtgggctatggatagttcaagtttcgtgtatagcttagtaatc 642
|||||| | ||| ||||||||||||||||| ||||||| || ||||||| | || |||
Sbjct: 448 acaaaagatagtatcatgtgggctatggatcgttcaagctttaggtatagcgtcgttatc 507
Query: 643 tggaaaaactcttcaagtctagaagaaaggactaaaactgtttatgccagagataaaatt 702
||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||
Sbjct: 508 tggaaaaactcttcaagtctagaagaaagaacggaaactgtttatcccgaagataaaatt 567
Query: 703 caccaactctcaccagagacaacttactgtttaaaagttaaagccggactccgttcgcca 762
| |||| |||||||||| ||||| ||||||||||||||||| | ||| |||| | |
Sbjct: 568 tataaactgtcaccagagattacttattgtttaaaagttaaagcagaactgcgtttacaa 627
Query: 763 agaaaagtcggtgtctacagtccagtgtattgtataaataccacagtgaaacatcacctg 822
|| | ||| ||| ||| |||||||||||||||||||||||||||| || |||| | |
Sbjct: 628 agtagagttggttgctatagtccagtgtattgtataaataccacagagagacataaagta 687
Query: 823 ccttcaccagaaaatctagaaattaatgctgaaaaccgggtctatgttcttaaatggaat 882
||||||||||||||| || |||| |||||||| |||| | ||||||||||||| ||| ||
Sbjct: 688 ccttcaccagaaaatatacaaatcaatgctgacaaccagatctatgttcttaagtgggat 747
Query: 883 tacacctatgaaaatgtgacttttcaagctcagtggctccatgcctttttaaaaaagatt 942
||| | |||||||| | |||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 748 tacccatatgaaaacgcaacttttcaagctcagtggctccgtgccttttttaaaaagatt 807
Query: 943 cctgaggaccattcagacaagtggaaacaaataccaaactgtgaaaatgtcaaaacgacc 1002
|||| | | ||||||||||| |||||||||||||| |||||||||||||||| || |||
Sbjct: 808 cctgggaatcattcagacaaatggaaacaaataccgaactgtgaaaatgtcacaagtacc 867
Query: 1003 cattgtgtctttcctcaaaatgttttcacgaaaggaattttcttcatccgtgtccaagca 1062
|| ||||||||||||| | | |||| | | | ||||||| || ||||||| | ||||
Sbjct: 868 cactgtgtctttcctcgagaggtttcctcaaggggaatttactatgtccgtgtacgagca 927
Query: 1063 tctaatggaaatagcacatctctttggtccgaagagaagagatttaatactgaaatgcaa 1122
|||||||||||| | || ||| ||||||| ||||||||| |||||||||||||||| ||
Sbjct: 928 tctaatggaaatggtacctctttttggtctgaagagaaggaatttaatactgaaatgaaa 987
Query: 1123 actatcctgtttcctcccgtcatcaacatgaaacccataaatgatgcttcactgcgtgtc 1182
|||||| | |||||||| ||||||| | ||||| || | | ||||| |||||||| ||||
Sbjct: 988 actatcatatttcctccagtcatcagcgtgaaatccgttactgatgattcactgcatgtc 1047
Query: 1183 ggtatcggtgctccgaaagaatctgaggacaagtctgtgaaccagctttacccactaatt 1242
|| | |||||| | |||| ||||| ||| ||||||||| ||||| ||||| ||||||
Sbjct: 1048 agtgttggtgcttcagaagagtctgaaaacatgtctgtgaatcagctctacccgctaatt 1107
Query: 1243 tatgaagttatttttagagaaaacacttcagatactgagagagacgttctagagaagaga 1302
|||||||| |||||| | |||||||||||| || |||||||| | ||||||||||| |||
Sbjct: 1108 tatgaagtaattttttgggaaaacacttcaaatgctgagagaaaagttctagagaaaaga 1167
Query: 1303 acggatttta-ctttctctaacttgaaaccactgactgtgtattgtgtcaaagccagagc 1361
|| |||||| ||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1168 accaattttatctttc-ctgacttgaaaccgctgactgtgtattgtgtcaaagccagagc 1226
Query: 1362 actcatcgagaatgacaggtggaatagaagcagtgtttttagtgacactgtgtgcgagaa 1421
|||||| || ||||||||| |||||| | | || | ||||||| |||||||| |||||
Sbjct: 1227 actcattgaaaatgacaggcggaataaagggagcagtgttagtgatactgtgtgtgagaa 1286
Query: 1422 aaccaaaccaggaagcacttcccaagcctggcttatagctggaa 1465
||| |||||||||| |||||| || |||||||||||| |||||
Sbjct: 1287 aacaaaaccaggaaatacttccaaaacctggcttatagttggaa 1330
Score = 165 bits (83), Expect = 1e-38
Identities = 218/263 (82%)
Strand = Plus / Plus
Query: 1523 gatgtatcaattatgtgttcttcccatcaagtaaacctccttccactatagatgagtatt 1582
||||| |||| ||||||||||| ||||||||||||||||||||| || | || |||||||
Sbjct: 1388 gatgtgtcaagtatgtgttctttccatcaagtaaacctccttcctctgttgacgagtatt 1447
Query: 1583 tcgctgaacagccactcaagaatctgcttctctccacctctgaagaacaaaccgaaatat 1642
|| | || |||||||| | |||||| || || ||||| ||||| |||||||| |||| ||
Sbjct: 1448 tctccgatcagccactaaggaatctactcctttccacttctgaggaacaaacggaaagat 1507
Query: 1643 gtttcatcgttgaaaatacaaacactattactacaatagaagagactgatcaaattgatg 1702
|||| || |||||||| ||| || ||||||| |||||||||||||||| |||||||||
Sbjct: 1508 gttttataattgaaaatgcaagcattattactgaaatagaagagactgatgaaattgatg 1567
Query: 1703 acaatcacagcagatgcagttctcaaacgaatcgggattcaggagtctattcgaatgaag 1762
| ||||| | | |||||| ||||| | || ||||||||| |||||| || ||||
Sbjct: 1568 aagttcacaaaaagtacagttcccaaactagtcaagattcaggaaactattcaaacgaag 1627
Query: 1763 atgaaaacagtggaagcaaaata 1785
|||||||||||||||||||||||
Sbjct: 1628 atgaaaacagtggaagcaaaata 1650
Score = 58.0 bits (29), Expect = 2e-06
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 148 ctgggtgcgacgaccctgatgctggtcgctggg 180
||||| |||||||||||||||||||||||||||
Sbjct: 13 ctgggcgcgacgaccctgatgctggtcgctggg 45
>gnl|UG|Hs#S3218922 Homo sapiens interferon (alpha, beta and omega)
receptor 1 (IFNAR1), mRNA /cds=(79,1752) /gb=NM_000629
/gi=10835182 /ug=Hs.1513 /len=2755
Length = 2755
Score = 424 bits (214), Expect = e-117
Identities = 697/856 (81%), Gaps = 9/856 (1%)
Strand = Plus / Plus
Query: 244 atcattgatgacaacttcatcctgaaatggaagagcagcagtgaatccgtcagcaatgtg 303
||||| ||||||||||| ||||||| ||||| || ||| ||| || ||| | ||||||
Sbjct: 196 atcatagatgacaactttatcctgaggtggaacaggagcgatgagtctgtcgggaatgtg 255
Query: 304 actttttcagcagattatcaaataacagggatggataattggataaagttgcctggatgt 363
||||||||| |||||||||| ||| |||||||||||||||||||| ||| |||| |||
Sbjct: 256 actttttcattcgattatcaaaaaactgggatggataattggataaaattgtctgggtgt 315
Query: 364 caatatgttactagcactgaatgcaacttttcttccatcaagcttaaaagcgtgtatgaa 423
|| || ||||||| || |||||||||||||||| ||||||| || || ||||||
Sbjct: 316 cagaatattactagtaccaaatgcaacttttcttcactcaagctgaat---gtttatgaa 372
Query: 424 aaaattaaattgcgtataagagcagaaacaggaaacagcacttctccgtggtatgaggtt 483
||||||||||||||||||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 373 gaaattaaattgcgtataagagcagaaaaagaaaa---cacttcttcatggtatgaggtt 429
Query: 484 gagccgtttataccatttcaagaagcacaaattggccctccagatgtacatttagaagcc 543
|| | |||| |||||||| |||| || ||||| |||||||| ||||||||||||||
Sbjct: 430 gactcatttacaccatttcgcaaagctcagattggtcctccagaagtacatttagaagct 489
Query: 544 gaagataaagcaataataataaacctctctcctcctggcacaaaaaacagtgtcatgtgg 603
|||||||| |||||| | ||| || ||| ||||||| |||||| | ||||| ||||||
Sbjct: 490 gaagataaggcaatagtgatacacatct---ctcctggaacaaaagatagtgttatgtgg 546
Query: 604 gctatggatagttcaagtttcgtgtatagcttagtaatctggaaaaactcttcaagtcta 663
||| ||||| ||| ||| || ||||||||| | |||||||||||||||||| || ||
Sbjct: 547 gctttggatggtttaagctttacatatagcttacttatctggaaaaactcttcaggtgta 606
Query: 664 gaagaaaggactaaaactgtttatgccagagataaaattcaccaactctcaccagagaca 723
|||||||||| | ||| | ||||| ||||| |||||||| | ||||||||||||||||
Sbjct: 607 gaagaaaggattgaaaatatttattccagacataaaatttataaactctcaccagagact 666
Query: 724 acttactgtttaaaagttaaagccggactccgttcgccaagaaaagtcggtgtctacagt 783
||||| ||| ||||||||||||| | ||| | | || || | ||| | |||||||| |||
Sbjct: 667 acttattgtctaaaagttaaagcagcactacttacgtcatggaaaattggtgtctatagt 726
Query: 784 ccagtgtattgtataaataccacagtgaaacatcacctgccttcaccagaaaatctagaa 843
||||| |||||||||| |||||||| || || | || ||| ||||||||||| |||||
Sbjct: 727 ccagtacattgtataaagaccacagttgaaaatgaactacctccaccagaaaatatagaa 786
Query: 844 attaatgctgaaaaccgggtctatgttcttaaatggaattacacctatgaaaatgtgact 903
| | || |||| | | |||||||||||||||| |||| || |||| ||| ||||
Sbjct: 787 gtcagtgtccaaaatcagaactatgttcttaaatgggattatacatatgcaaacatgacc 846
Query: 904 tttcaagctcagtggctccatgcctttttaaaaaagattcctgaggaccattcagacaag 963
||||||| |||||||||||| ||||||||||||| || ||||| |||||| | ||
Sbjct: 847 tttcaagttcagtggctccacgcctttttaaaaaggaatcctggaaaccatttgtataaa 906
Query: 964 tggaaacaaataccaaactgtgaaaatgtcaaaacgacccattgtgtctttcctcaaaat 1023
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 907 tggaaacaaatacctgactgtgaaaatgtcaaaactacccagtgtgtctttcctcaaaac 966
Query: 1024 gttttcacgaaaggaattttcttcatccgtgtccaagcatctaatggaaatagcacatct 1083
|||||| |||||||||| | | |||| || ||||||||| ||||||||| |||||||
Sbjct: 967 gttttccaaaaaggaatttaccttctccgcgtacaagcatctgatggaaataacacatct 1026
Query: 1084 ctttggtccgaagaga 1099
||||||| |||||||
Sbjct: 1027 ttttggtctgaagaga 1042
Score = 145 bits (73), Expect = 1e-32
Identities = 172/205 (83%)
Strand = Plus / Plus
Query: 1499 tttatggtgtgaaagtcgtctcgcgatgtatcaattatgtgttcttcccatcaagtaaac 1558
|||||| || ||||||| ||| | |||| ||||||||||| ||||| |||||| |||||
Sbjct: 1439 tttatgctgcgaaagtcttcttgagatgcatcaattatgtcttctttccatcacttaaac 1498
Query: 1559 ctccttccactatagatgagtatttcgctgaacagccactcaagaatctgcttctctcca 1618
|| |||||| |||||||||||||||| ||||||||||| | |||||||| || || || |
Sbjct: 1499 cttcttccagtatagatgagtatttctctgaacagccattgaagaatcttctgctttcaa 1558
Query: 1619 cctctgaagaacaaaccgaaatatgtttcatcgttgaaaatacaaacactattactacaa 1678
| ||||| ||||||| ||||| ||||||||| ||||||||| || ||| ||| |||||
Sbjct: 1559 cttctgaggaacaaatcgaaaaatgtttcataattgaaaatataagcacaattgctacag 1618
Query: 1679 tagaagagactgatcaaattgatga 1703
||||||| ||| |||||| ||||||
Sbjct: 1619 tagaagaaactaatcaaactgatga 1643
Score = 117 bits (59), Expect = 3e-24
Identities = 179/219 (81%)
Strand = Plus / Plus
Query: 1217 ctgtgaaccagctttacccactaatttatgaagttatttttagagaaaacacttcagata 1276
|||||| |||| ||| ||||| ||||||||| |||||||| | |||||||||||| ||
Sbjct: 1157 ctgtgatccaggattatccactgatttatgaaattattttttgggaaaacacttcaaatg 1216
Query: 1277 ctgagagagacgttctagagaagagaacggattttactttctctaacttgaaaccactga 1336
|||||||| | || | ||||| | ||| ||| |||| | |||| |||||||||||||
Sbjct: 1217 ctgagagaaaaattatcgagaaaaaaactgatgttacagttcctaatttgaaaccactga 1276
Query: 1337 ctgtgtattgtgtcaaagccagagcactcatcgagaatgacaggtggaatagaagcagtg 1396
|||| |||||||| ||||||||||||| || | | |||| | | ||||| ||||||||
Sbjct: 1277 ctgtatattgtgtgaaagccagagcacacaccatggatgaaaagctgaataaaagcagtg 1336
Query: 1397 tttttagtgacactgtgtgcgagaaaaccaaaccaggaa 1435
||||||||||| |||| || |||||||| ||||||||||
Sbjct: 1337 tttttagtgacgctgtatgtgagaaaacaaaaccaggaa 1375
Score = 61.9 bits (31), Expect = 1e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1926 aaaaagcaccttcagatcatcggtcctcaaaatacaggcaagcacttaactctttaaaa 1984
||||| || ||||||||||| |||||| ||||||| ||||||| ||||||| |||||||
Sbjct: 1867 aaaaaacatcttcagatcataggtcctaaaaatacgggcaagctcttaactatttaaaa 1925
>gnl|UG|Mm#S8041773 Mus musculus interferon (alpha and beta)
receptor 1 (Ifnar1), mRNA /cds=(95,1867) /gb=NM_010508
/gi=6754301 /ug=Mm.502 /len=3894
Length = 3894
Score = 52.0 bits (26), Expect = 1e-04
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 457 aacagcacttctccgtggtatgaggttgagccgtttataccatttcaagaagcacaaatt 516
|||||||| ||| ||||| |||||||||| |||||||| ||||| | ||| || ||
Sbjct: 419 aacagcacatcttcgtggaatgaggttgatccgtttattccattctacacagctcacatg 478
Query: 517 ggccctccagatgtacatttagaagccgaagataaagc 554
|||| ||||| |||| ||||||||| |||||||||||
Sbjct: 479 agccccccagaagtacgtttagaagctgaagataaagc 516
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 715 ccagagacaacttactgtttaaaagttaaagc 746
|||||||| |||||||||||| ||||||||||
Sbjct: 674 ccagagactacttactgtttagaagttaaagc 705
>gnl|UG|Hs#S4329900 UI-H-ED0-aww-a-10-0-UI.s1 NCI_CGAP_ED0 Homo
sapiens cDNA clone IMAGE:5824401 3', mRNA sequence
/clone=IMAGE:5824401 /clone_end=3' /gb=BM996141
/gi=19721042 /ug=Hs.144748 /len=1186
Length = 1186
Score = 50.1 bits (25), Expect = 5e-04
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 864 ctatgttcttaaatggaattacacctatgaaaatgtgacttttcaagctcagtggctcca 923
||||||||||||||| |||| || |||| ||| |||| ||||||| ||||||||||||
Sbjct: 671 ctatgttcttaaatgcgattatacatatgcaaacatgacctttcaagttcagtggctcca 612
Query: 924 t 924
|
Sbjct: 611 t 611
>gnl|UG|Mm#S10866383 Mus musculus 0 day neonate thymus cDNA, RIKEN
full-length enriched library, clone:A430104D06
product:unknown EST, full insert sequence. /gb=AK040508
/gi=26087898 /ug=Mm.210505 /len=3339
Length = 3339
Score = 40.1 bits (20), Expect = 0.48
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 452 caggaaacagcacttctccgtggt 475
||||||||||||||||||| ||||
Sbjct: 2244 caggaaacagcacttctccatggt 2221
>gnl|UG|Hs#S1569917 Homo sapiens mRNA; cDNA DKFZp566L033 (from clone
DKFZp566L033) /gb=AL050064 /gi=4884294 /ug=Hs.425559
/len=3011
Length = 3011
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 548 ataaagcaataataataaa 566
|||||||||||||||||||
Sbjct: 1723 ataaagcaataataataaa 1741
>gnl|UG|Hs#S5509350 UI-H-FH1-bfn-e-15-0-UI.s1 NCI_CGAP_FH1 Homo
sapiens cDNA clone UI-H-FH1-bfn-e-15-0-UI 3', mRNA
sequence /clone=UI-H-FH1-bfn-e-15-0-UI /clone_end=3'
/gb=BU619154 /gi=23285369 /ug=Hs.417262 /len=1136
Length = 1136
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 907 caagctcagtggctccatg 925
|||||||||||||||||||
Sbjct: 835 caagctcagtggctccatg 853
>gnl|UG|Hs#S1364377 ty62d08.x1 NCI_CGAP_Kid11 Homo sapiens cDNA
clone IMAGE:2283663 3' similar to SW:IF16_HUMAN Q16666
GAMMA-INTERFERON-INDUCIBLE PROTEIN IFI-16 ;, mRNA
sequence /clone=IMAGE:2283663 /clone_end=3' /gb=AI654153
/gi=4738132 /ug=Hs.412269 /len=226
Length = 226
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 388 aacttttcttccatcaagc 406
|||||||||||||||||||
Sbjct: 60 aacttttcttccatcaagc 78
>gnl|UG|Hs#S5893722 UI-CF-DU1-aaz-k-24-0-UI.s1 UI-CF-DU1 Homo sapiens
cDNA clone UI-CF-DU1-aaz-k-24-0-UI 3', mRNA sequence
/clone=UI-CF-DU1-aaz-k-24-0-UI /clone_end=3' /gb=BU680638
/gi=23529768 /ug=Hs.390726 /len=551
Length = 551
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1108 aatactgaaatgcaaacta 1126
|||||||||||||||||||
Sbjct: 271 aatactgaaatgcaaacta 289
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 416296
Number of Sequences: 230285
Number of extensions: 416296
Number of successful extensions: 30922
Number of sequences better than 10.0: 60
length of query: 2483
length of database: 241,976,893
effective HSP length: 19
effective length of query: 2464
effective length of database: 237,601,478
effective search space: 585450041792
effective search space used: 585450041792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)