>20030531C-003267 (20030531C-003267) 20030531C-003267 CAATATGATT ATGACAGCAG CACCATCCGG AAGAGGATAT TTCAAGAGGC GCTGGTTCAA ATCACACTTC CCACCATGCA GAAGGCGCTG GCGTCCATGT GTAAACCAGA ACTTCAGAAA TACGAGCAGT TCATTTTTGC AGATCACACC CATATGATCC ACGTTGAGAA TGTCTACGAG GAGATTTTAC ATCAGATCCT CCTTGATGAA ACCCTGAAAG TGATAAAGGA AGCTGCTGTC CTGAAGAAAC ACAACTTATT TGAAGACAAC ATGGCCCTGC CCAGCGAAAG CGTGTCCAGC TTAACTGATC TAAAAACTCC TGCAGGGTCC AACCAGGCCA GCCCTGCCAG GAGAGCCTCT GCCATTCTGC CAGGCGGTCC AGATAGTGAG ATCGTGAGTA ATGAGGTATT CCAGGAGTCA GGGGAAAAGA AGGAGTCTGG GGTCTCCAGT TCTTTGGCCA AAGGAGAAAG CCTTCCTTCC CCTGTGCCCA GCCCTCCCCC AGGCGGGGAC GGGCAGCTCA TCATTTCAAG CATGGATGAC CCTGCTGTGA ATCTTGTGGC TGCAGAGGAC ACAGCAGGAG ACCTGGGCAC ACACTCATCA GAGCTGGAGT GTGAGGAGAC TCCTGAGGAC CAAGAACCCC CCCAGGAAAA GCCCGAGCCC ACCTCTGCCT CAGGCTCCTT GAAGGAACTC AGAGACCTGT TGACAGTGAC CATTGAAGTA CCAGCGGAGT CTGGCAAGCT CAAGATTGAA GAAGATACAA ATGAGGAGAC CCTGGTTCCC CAGGAAATGG AAAAAGAAGA GGAAACAACC CAAGTCTGCA CAGGGGCCCA TCAAGCAGCT GCCTCCAGTC AGGACAACTG TGCAGAAAAC CAAGTGCATG AGAGAGAGAC CCATCCTCCT GCTCCAGAGG CCGAGGCGGG GGAGGCAGAG TTGGGGGCCC TTCCAGAGGC TCAGCCAGCC TGCGGGGAGC TCAGCGAGGG CACCCGCAGC CCAGGCCCCA CAGAGGAGCA AGTAGAGGCC GGGGGGCCCC CCAAAGGGGA GCTTACAGAG GGGGCTTCCG GACTGGATGC CCTTGGAGGA GAAGGGGCCG TGTGTGCTGT CGAGGCTGAG GCTGTGCCCC AAGAAGGTTG CATGTTCAGT TCGGACCCCC TCAGCCCCAG GGAGAGCCAG ATGTCTGTGG GAGAAGAATT GGTGGGAGGG GAGTGCAGCA CAGCCCTGGA TGCTGCCAGC GTGGATGCAG GGGAGAGGGA GGCTGCCCAT GTTCACCAGT GTCCGTGGGT GGTTGAGAAT GATCCAAACA CCACCGAGAC CCTGGAGTCA CAGCCAGAGG GTCCCCCAGC ACAGCCCTGG GAGGAGTGAA AGGGGCAGTT TGGCAAAAGC CTTTCTCTGA ACAAACTCAG ACAAAAGAAT ATAGCTAAGG GTACACGTAG GGGTTGCATA CACGTGGTTA CCAAAAGAAA AAGAAAAAAA AAAAAAAGTA TAAATACTTA ATTTGTAGAA TGAAGCCAGA GGCAATGCAC ACAGGGCGTG CGCACTGAGG CAAACCTTTG TGGAATTGAA CTGTTCCACC ATGAATTATT GCTTTAGCAT TTTAATAGGA ATTACAAAGG TAATG
Query= 20030531C-003267 (20030531C-003267) 20030531C-003267
(1615 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S3987764 Homo sapiens chromosome 1 open reading frame... 575 e-162
Alignment gnl|UG|Mm#S9099241 Mus musculus niban protein (Niban), mRNA /cd... 339 2e-91
Alignment gnl|UG|Bt#S12374407 CZI603001037.R1 CSEQFXN21 testes Bos taurus... 113 3e-23
Alignment gnl|UG|Hs#S2510460 601655470R1 NIH_MGC_65 Homo sapiens cDNA clo... 44 0.020
Alignment gnl|UG|Hs#S4745957 AGENCOURT_7770811 NIH_MGC_70 Homo sapiens cD... 42 0.079
Alignment gnl|UG|Mm#S10865362 Mus musculus 3 days neonate thymus cDNA, RI... 42 0.079
Alignment gnl|UG|Hs#S4103980 UI-E-CR1-aec-c-05-0-UI.r1 UI-E-CR1 Homo sapi... 40 0.31
Alignment gnl|UG|Hs#S1730120 Homo sapiens N-myc downstream regulated gene... 40 0.31
Alignment gnl|UG|Mm#S8580331 BB453023 RIKEN full-length enriched, 12 days... 40 0.31
Alignment gnl|UG|Mm#S9834316 AGENCOURT_10124775 NIH_MGC_134 Mus musculus ... 40 0.31
>gnl|UG|Hs#S3987764 Homo sapiens chromosome 1 open reading frame 24
(C1orf24), mRNA /cds=(195,2981) /gb=NM_052966
/gi=16757969 /ug=Hs.48778 /len=6919
Length = 6919
Score = 575 bits (290), Expect = e-162
Identities = 530/610 (86%)
Strand = Plus / Plus
Query: 1 caatatgattatgacagcagcaccatccggaagaggatatttcaagaggcgctggttcaa 60
||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||
Sbjct: 1641 caatatgattatgacagcagcaccatccgaaagaagatatttcaagaggcactagttcaa 1700
Query: 61 atcacacttcccaccatgcagaaggcgctggcgtccatgtgtaaaccagaacttcagaaa 120
|||||||||||||| |||||||||| |||||||||| || |||||||| |||||||||
Sbjct: 1701 atcacacttcccactgtgcagaaggcactggcgtccacatgcaaaccagagcttcagaaa 1760
Query: 121 tacgagcagttcatttttgcagatcacacccatatgatccacgttgagaatgtctacgag 180
|||||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||| |||
Sbjct: 1761 tacgagcagttcatctttgcagatcataccaatatgattcacgttgaaaatgtctatgag 1820
Query: 181 gagattttacatcagatcctccttgatgaaaccctgaaagtgataaaggaagctgctgtc 240
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1821 gagattttacatcagatcctgcttgatgaaactctgaaagtgataaaggaagctgctatc 1880
Query: 241 ctgaagaaacacaacttatttgaagacaacatggccctgcccagcgaaagcgtgtccagc 300
||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||
Sbjct: 1881 ttgaagaaacacaacttatttgaagataacatggccttgcccagtgaaagtgtgtccagc 1940
Query: 301 ttaactgatctaaaaactcctgcagggtccaaccaggccagccctgccaggagagcctct 360
||||| |||||||| | || ||||||| |||||||||||||||||||||||||| |||
Sbjct: 1941 ttaacagatctaaagccccccacagggtcaaaccaggccagccctgccaggagagcttct 2000
Query: 361 gccattctgccaggcggtccagatagtgagatcgtgagtaatgaggtattccaggagtca 420
|||||||||||||| | || | |||||||| | | ||||| || |||||||||||||||
Sbjct: 2001 gccattctgccaggagttctgggtagtgagaccctcagtaacgaagtattccaggagtca 2060
Query: 421 ggggaaaagaaggagtctggggtctccagttctttggccaaaggagaaagccttccttcc 480
| |||| ||||| || ||| |||| | || || ||||||||||||||||||||| || |
Sbjct: 2061 gaggaagagaagcagcctgaggtccctagctcgttggccaaaggagaaagcctttctctc 2120
Query: 481 cctgtgcccagccctcccccaggcggggacgggcagctcatcatttcaagcatggatgac 540
|||| ||| ||||| ||||||| ||| | |||| | || |||||||| ||||||||
Sbjct: 2121 cctgggccaagcccacccccagatgggactgagcaggtgattatttcaagagtggatgac 2180
Query: 541 cctgctgtgaatcttgtggctgcagaggacacagcaggagacctgggcacacactcatca 600
|| | ||||||| |||||| ||||||||||||||||| || ||||||| |||||||
Sbjct: 2181 cccgtggtgaatcctgtggcaacagaggacacagcaggactcccgggcacatgctcatca 2240
Query: 601 gagctggagt 610
||||||||||
Sbjct: 2241 gagctggagt 2250
Score = 103 bits (52), Expect = 3e-20
Identities = 107/124 (86%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 1487 cttaatttgtagaatgaagccagaggcaatgcacacagggcgtgcgc-actgaggcaaac 1545
||||||||| | ||| || ||||||| |||||| ||||||| || || ||||||||||||
Sbjct: 3087 cttaatttgaataataaaaccagaggaaatgcatacagggcatgagcaactgaggcaaac 3146
Query: 1546 ctttgtggaattgaactgttccaccatgaattattgctttagcattttaataggaattac 1605
||||||||| |||| ||||| || ||||||| ||||||||| ||||||||| |||||||
Sbjct: 3147 ctttgtggacatgaattgttctacgatgaatttttgctttagtattttaataagaattac 3206
Query: 1606 aaag 1609
||||
Sbjct: 3207 aaag 3210
Score = 44.1 bits (22), Expect = 0.020
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 748 gaagaagatacaaatgaggagaccctggttccccaggaaatggaaaaagaagaggaaa 805
||||||||||| |||| ||||| || |||||||| |||| ||| ||||||||||||
Sbjct: 2385 gaagaagatacgaatggggagagccacgttccccaagaaaatgaagaagaagaggaaa 2442
Score = 42.1 bits (21), Expect = 0.079
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1351 gaggagtgaaaggggcagtttggcaaaagcctttctctgaa 1391
|||||||||||||| || |||||| ||| |||||||||||
Sbjct: 2973 gaggagtgaaagggacaatttggctgaagtctttctctgaa 3013
>gnl|UG|Mm#S9099241 Mus musculus niban protein (Niban), mRNA
/cds=(601,2778) /gb=NM_022018 /gi=11528503 /ug=Mm.157700
/len=3468
Length = 3468
Score = 339 bits (171), Expect = 2e-91
Identities = 369/435 (84%)
Strand = Plus / Plus
Query: 1 caatatgattatgacagcagcaccatccggaagaggatatttcaagaggcgctggttcaa 60
||||||||||| |||||||||||||||||||||| ||| || || ||||| || |||||
Sbjct: 1441 caatatgattacgacagcagcaccatccggaagaagatcttccaggaggcattgattcaa 1500
Query: 61 atcacacttcccaccatgcagaaggcgctggcgtccatgtgtaaaccagaacttcagaaa 120
|||||||| ||||| |||||||||||||||| |||| || |||||||| |||||||||
Sbjct: 1501 atcacactgcccactgtgcagaaggcgctggcatccacatgcaaaccagagcttcagaaa 1560
Query: 121 tacgagcagttcatttttgcagatcacacccatatgatccacgttgagaatgtctacgag 180
|| ||||||||||| ||||||||||| ||| | ||||||||||||||||| ||||| ||
Sbjct: 1561 tatgagcagttcatctttgcagatcataccaacatgatccacgttgagaacgtctatgaa 1620
Query: 181 gagattttacatcagatcctccttgatgaaaccctgaaagtgataaaggaagctgctgtc 240
|||||||| || |||||||||| ||||| |||||||||||||||| ||| || || ||
Sbjct: 1621 gagattttgtatgagatcctcctcgatgagaccctgaaagtgataacggaggcagccatc 1680
Query: 241 ctgaagaaacacaacttatttgaagacaacatggccctgcccagcgaaagcgtgtccagc 300
||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 1681 ttgaagaaacacaacttatttgaagacaacatggccttgcccagtgaaagtgtgtccagc 1740
Query: 301 ttaactgatctaaaaactcctgcagggtccaaccaggccagccctgccaggagagcctct 360
| || || || ||||| | ||||| |||||||||||||| ||||| |||| |||
Sbjct: 1741 ctgacagacctcaaaaccgccatggggtcaaaccaggccagcccagccagaagagtatct 1800
Query: 361 gccattctgccaggcggtccagatagtgagatcgtgagtaatgaggtattccaggagtca 420
|||||||| ||||| | |||||||| |||| || |||||||| || ||||||||| ||
Sbjct: 1801 gccattctcccaggagctccagataatgagctcccaagtaatgaagtgttccaggagcca 1860
Query: 421 ggggaaaagaaggag 435
| |||||||||||||
Sbjct: 1861 gaggaaaagaaggag 1875
>gnl|UG|Bt#S12374407 CZI603001037.R1 CSEQFXN21 testes Bos taurus cDNA,
mRNA sequence /gb=CB169980 /gi=28156108 /ug=Bt.4645
/len=789
Length = 789
Score = 113 bits (57), Expect = 3e-23
Identities = 189/233 (81%)
Strand = Plus / Minus
Query: 1070 cccttggaggagaaggggccgtgtgtgctgtcgaggctgaggctgtgccccaagaaggtt 1129
|||||| ||||| |||| ||||||| |||| ||||||||||||||| ||| ||||| ||
Sbjct: 372 cccttgaaggaggagggcccgtgtgctctgtggaggctgaggctgtgtccctagaagctt 313
Query: 1130 gcatgttcagttcggaccccctcagccccagggagagccagatgtctgtgggagaagaat 1189
|| ||||| |||| ||| || |||||||||||||||||||| | ||||||| ||||||
Sbjct: 312 gcgtgttccgttctgactccatcagccccagggagagccaggtttctgtggaagaagagg 253
Query: 1190 tggtgggaggggagtgcagcacagccctggatgctgccagcgtggatgcaggggagaggg 1249
|||||| ||| ||||||||||||| | ||| |||| | |||||| |||||||
Sbjct: 252 cggtgggcgggagctgcagcacagcccagcctgccaccagtgaggatgcccaggagagga 193
Query: 1250 aggctgcccatgttcaccagtgtccgtgggtggttgagaatgatccaaacacc 1302
|||||| || |||||| |||||| ||||||||| ||||| | | ||||||||
Sbjct: 192 aggctgaccccgttcacgagtgtcagtgggtggtggagaacgttgcaaacacc 140
Score = 89.7 bits (45), Expect = 4e-16
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 752 aagatacaaatgaggagaccctggttccccaggaaatggaaaaagaagaggaaacaaccc 811
|||||||| |||||||| |||| |||||||| || || ||||||||||||||| ||||||
Sbjct: 690 aagatacacatgaggaggcccttgttccccaagatattgaaaaagaagaggaagcaaccc 631
Query: 812 aagtctgcacaggggcccatcaagcagctgcctccagtcaggacaactgtgcagaaa 868
|| || ||||| |||| ||||||| |||| || ||||||||||||||| |||||
Sbjct: 630 aaatcgacacagaggccagtcaagcatctgcttcgggtcaggacaactgtgaagaaa 574
Score = 65.9 bits (33), Expect = 5e-09
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 941 ttccagaggctcagccagcctgcggggagctcagcgagggcacccgcagcccaggcccca 1000
||||||| ||||||||| |||| |||| |||||||||||| |||| |||||| |||||
Sbjct: 501 ttccagatgctcagccaacctgtggggggctcagcgagggggcccggggcccagacccca 442
Query: 1001 cagaggagc 1009
|||||||||
Sbjct: 441 cagaggagc 433
Score = 44.1 bits (22), Expect = 0.020
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1351 gaggagtgaaaggggcagtttggcaaaagcctttctctgaacaaactcag 1400
|||||||||||||| ||| |||| |||| |||||| ||||||||||||
Sbjct: 94 gaggagtgaaagggacagagtggccaaagtctttcttggaacaaactcag 45
>gnl|UG|Hs#S2510460 601655470R1 NIH_MGC_65 Homo sapiens cDNA clone
IMAGE:3846280 3', mRNA sequence /clone=IMAGE:3846280
/clone_end=3' /gb=BE962237 /gi=11764934 /ug=Hs.294400
/len=1664
Length = 1664
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 758 caaatgaggagaccctggttcc 779
||||||||||||||||||||||
Sbjct: 1177 caaatgaggagaccctggttcc 1156
>gnl|UG|Hs#S4745957 AGENCOURT_7770811 NIH_MGC_70 Homo sapiens cDNA
clone IMAGE:6021124 5', mRNA sequence
/clone=IMAGE:6021124 /clone_end=5' /gb=BU175245
/gi=22689229 /ug=Hs.442615 /len=968
Length = 968
Score = 42.1 bits (21), Expect = 0.079
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1022 gggggccccccaaaggggagc 1042
|||||||||||||||||||||
Sbjct: 624 gggggccccccaaaggggagc 644
>gnl|UG|Mm#S10865362 Mus musculus 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630075G24
product:unclassifiable, full insert sequence.
/gb=AK042251 /gi=26088919 /ug=Mm.227618 /len=1212
Length = 1212
Score = 42.1 bits (21), Expect = 0.079
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1387 ctgaacaaactcagacaaaagaata 1411
||||||||| |||||||||||||||
Sbjct: 1166 ctgaacaaagtcagacaaaagaata 1190
>gnl|UG|Hs#S4103980 UI-E-CR1-aec-c-05-0-UI.r1 UI-E-CR1 Homo sapiens
cDNA clone UI-E-CR1-aec-c-05-0-UI 5', mRNA sequence
/clone=UI-E-CR1-aec-c-05-0-UI /clone_end=5' /gb=BM686831
/gi=19000089 /ug=Hs.435034 /len=947
Length = 947
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 849 tcaggacaactgtgcagaaa 868
||||||||||||||||||||
Sbjct: 737 tcaggacaactgtgcagaaa 718
>gnl|UG|Hs#S1730120 Homo sapiens N-myc downstream regulated gene 1
(NDRG1), mRNA /cds=(111,1295) /gb=NM_006096 /gi=5174656
/ug=Hs.75789 /len=3020
Length = 3020
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 972 cagcgagggcacccgcagcc 991
||||||||||||||||||||
Sbjct: 1178 cagcgagggcacccgcagcc 1197
>gnl|UG|Mm#S8580331 BB453023 RIKEN full-length enriched, 12 days
embryo spinal ganglion Mus musculus cDNA clone
D130020O15 3'. /clone=D130020O15 /clone_end=3'
/gb=BB453023 /gi=9348470 /ug=Mm.257272 /len=262
Length = 262
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 789 ggaaaaagaagaggaaacaa 808
||||||||||||||||||||
Sbjct: 152 ggaaaaagaagaggaaacaa 133
>gnl|UG|Mm#S9834316 AGENCOURT_10124775 NIH_MGC_134 Mus musculus cDNA
clone IMAGE:6511865 5', mRNA sequence
/clone=IMAGE:6511865 /clone_end=5' /gb=BU515204
/gi=22822730 /ug=Mm.27272 /len=1270
Length = 1270
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1023 ggggccccccaaaggggagc 1042
||||||||||||||||||||
Sbjct: 947 ggggccccccaaaggggagc 966
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 332578
Number of Sequences: 230285
Number of extensions: 332578
Number of successful extensions: 28479
Number of sequences better than 10.0: 74
length of query: 1615
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1596
effective length of database: 237,601,478
effective search space: 379211958888
effective search space used: 379211958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)