Search to UniGene2 database
Query= 20030531C-003564 (20030531C-003564) 20030531C-003564
(917 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S11154053 Homo sapiens CD8 antigen, beta polypeptide ... 141 6e-32
Alignment gnl|UG|Bt#S12376544 YGK602699560.R1 CSEQFL16 thymus Bos taurus ... 113 1e-23
Alignment gnl|UG|Mm#S9875137 Mus musculus, Similar to KIAA0140 gene produ... 40 0.18
Alignment gnl|UG|Mm#S8041354 Mus musculus CD8 antigen, beta chain (Cd8b),... 40 0.18
Alignment gnl|UG|Mm#S8762819 Mus musculus solute carrier family 4 (anion ... 40 0.18
Alignment gnl|UG|Hs#S3355479 Homo sapiens bruno-like 5, RNA binding prote... 38 0.70
Alignment gnl|UG|Hs#S2329545 Homo sapiens mRNA for KIAA1526 protein, part... 38 0.70
Alignment gnl|UG|Hs#S3219181 Homo sapiens nuclear factor of kappa light p... 38 0.70
Alignment gnl|UG|Mm#S10849802 Mus musculus 2 days pregnant adult female o... 38 0.70
Alignment gnl|UG|Mm#S8455398 BB364251 RIKEN full-length enriched, 16 days... 38 0.70
>gnl|UG|Hs#S11154053 Homo sapiens CD8 antigen, beta polypeptide 1
(p37) (CD8B1), transcript variant 1, mRNA /cds=(51,791)
/gb=NM_172099 /gi=27886630 /ug=Hs.2299 /len=1468
Length = 1468
Score = 141 bits (71), Expect = 6e-32
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 334 cgtgaagcctgcggacagtggcaactacttctgcatggctgttggcaaccccgagctgac 393
||||||||| | |||||||||| ||||||||||||| || || | ||||||||||||
Sbjct: 365 cgtgaagccggaagacagtggcatctacttctgcatgatcgtcgggagccccgagctgac 424
Query: 394 ctttgggaagggaactcggctgagtgtggttgatgtctttcccaccactgcccagcccac 453
||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||||||
Sbjct: 425 cttcgggaagggaactcagctgagtgtggttgatttccttcccaccactgcccagcccac 484
Query: 454 caagaag 460
|||||||
Sbjct: 485 caagaag 491
Score = 73.8 bits (37), Expect = 1e-11
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 650 tgagcagagaatatgcttttggtgtcctgctacaaaaatacatcggtca 698
||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct: 739 tgagcagagaatacggttttggtgtcctgctacaaaaagacatcggtca 787
Score = 61.9 bits (31), Expect = 5e-08
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 7 tcccgggcgcgccaagatgcagccgaggctctggctcctcattgccgcgcagctg 61
|||||||||||||| ||||| |||| |||| ||||||||| | ||||||||||||
Sbjct: 35 tcccgggcgcgccacgatgcggccgcggctgtggctcctcctggccgcgcagctg 89
Score = 52.0 bits (26), Expect = 5e-05
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 537 ttggcctgctggtggccggccttctggttctgctggtgtccttggg 582
|||||||||||||||| ||| | |||||||||||||| ||| ||||
Sbjct: 568 ttggcctgctggtggctggcgtcctggttctgctggtttccctggg 613
Score = 44.1 bits (22), Expect = 0.011
Identities = 100/126 (79%)
Strand = Plus / Plus
Query: 116 caaaccaaccagatggtgaagctgtcctgtgaagccagaactttccccaccaacactcgc 175
||||||||| ||||||||| ||||||||| || || | || | || || |||| |||
Sbjct: 144 caaaccaacaagatggtgatgctgtcctgcgaggctaaaatctccctcagtaacatgcgc 203
Query: 176 atctactggctgaggctgcgtcaggccccaagtgccaacagccactacgagttcctggcc 235
|||||||||||||| | ||| ||||| || || |||| ||| ||||||||||||||
Sbjct: 204 atctactggctgagacagcgccaggcaccgagcagtgacagtcaccacgagttcctggcc 263
Query: 236 ctctgg 241
||||||
Sbjct: 264 ctctgg 269
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 770 aagctgcctgcttttaactactgcaagttctttctgtg 807
||||||||||||||| ||| ||||||| |||||||||
Sbjct: 856 aagctgcctgcttttcactgctgcaaggcctttctgtg 893
>gnl|UG|Bt#S12376544 YGK602699560.R1 CSEQFL16 thymus Bos taurus
cDNA, mRNA sequence /gb=CB172096 /gi=28158224
/ug=Bt.12414 /len=772
Length = 772
Score = 113 bits (57), Expect = 1e-23
Identities = 192/232 (82%), Gaps = 5/232 (2%)
Strand = Plus / Minus
Query: 611 aggagagcctggcatcgcctcatgaaacagttttgtaagtgagcagagaatatgctttt- 669
||||||||| ||| ||| ||| | |||||||||| |||||| ||||||||||| ||||
Sbjct: 772 aggagagcccggcttcgtctcttaaaacagttttacaagtgaccagagaatatggttttc 713
Query: 670 -ggtgtcctgct-acaaaaatacatcggtcactgatggacaaggt-ctggaaaaatgaga 726
||||||| ||| |||||||||||| ||||| ||||| | || | | |||||||||||
Sbjct: 712 tggtgtcccgctgacaaaaatacattggtcagtgatgagcgagatgccagaaaaatgaga 653
Query: 727 gcgaaaggacacactcaaccatggacatgtcacc-aacctgccaaagctgcctgctttta 785
| ||| ||||||||||| || |||| ||||||| || | || |||||||||| |||||
Sbjct: 652 gagaatggacacactcagccgtggaaatgtcactgaaaccgcagaagctgcctgttttta 593
Query: 786 actactgcaagttctttctgtggacctcatgcctgagagcaacttgttacat 837
||||||||||||||||||| ||| |||||||| || || | |||||||||||
Sbjct: 592 actactgcaagttctttctatgggcctcatgcatgggatctacttgttacat 541
>gnl|UG|Mm#S9875137 Mus musculus, Similar to KIAA0140 gene product,
clone MGC:40647 IMAGE:5400742, mRNA, complete cds
/cds=(236,1504) /gb=BC035523 /gi=23274144 /ug=Mm.225649
/len=5143
Length = 5143
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 603 gcctgcagaggagagcctgg 622
||||||||||||||||||||
Sbjct: 2577 gcctgcagaggagagcctgg 2558
>gnl|UG|Mm#S8041354 Mus musculus CD8 antigen, beta chain (Cd8b),
mRNA /cds=(46,687) /gb=NM_009858 /gi=6753357
/ug=Mm.153963 /len=1418
Length = 1418
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 15 gcgccaagatgcagccgaggctctggct 42
|||||||||||||||| ||||||||||
Sbjct: 38 gcgccaagatgcagccatggctctggct 65
Score = 38.2 bits (19), Expect = 0.70
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 770 aagctgcctgcttttaactactgcaag 796
|||||||||||||| |||| |||||||
Sbjct: 806 aagctgcctgctttgaactgctgcaag 832
Score = 38.2 bits (19), Expect = 0.70
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 412 gctgagtgtggttgatgtctttcccaccactgccc 446
||||| ||||||||||||| |||| || |||||||
Sbjct: 441 gctgactgtggttgatgtccttcctacaactgccc 475
>gnl|UG|Mm#S8762819 Mus musculus solute carrier family 4 (anion
exchanger), member 8 (Slc4a8), mRNA /cds=(130,3399)
/gb=NM_021530 /gi=10946959 /ug=Mm.34957 /len=3694
Length = 3694
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 808 gacctcatgcctgagagcaa 827
||||||||||||||||||||
Sbjct: 3139 gacctcatgcctgagagcaa 3158
>gnl|UG|Hs#S3355479 Homo sapiens bruno-like 5, RNA binding protein
(Drosophila) (BRUNOL5), mRNA /cds=(38,1495)
/gb=NM_021938 /gi=24762231 /ug=Hs.300850 /len=1895
Length = 1895
Score = 38.2 bits (19), Expect = 0.70
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 335 gtgaagcctgcggacagtg 353
|||||||||||||||||||
Sbjct: 398 gtgaagcctgcggacagtg 416
>gnl|UG|Hs#S2329545 Homo sapiens mRNA for KIAA1526 protein, partial
cds. /cds=(1,2893) /gb=AB040959 /gi=7959318 /ug=Hs.93836
/len=3566
Length = 3566
Score = 38.2 bits (19), Expect = 0.70
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 433 tcccaccactgcccagccc 451
|||||||||||||||||||
Sbjct: 2913 tcccaccactgcccagccc 2931
>gnl|UG|Hs#S3219181 Homo sapiens nuclear factor of kappa light
polypeptide gene enhancer in B-cells inhibitor, alpha
(NFKBIA), mRNA /cds=(95,1048) /gb=NM_020529 /gi=10092618
/ug=Hs.81328 /len=1550
Length = 1550
Score = 38.2 bits (19), Expect = 0.70
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 570 tggtgtccttgggtgctgctgtc 592
|||||||||||||||||| ||||
Sbjct: 699 tggtgtccttgggtgctgatgtc 721
>gnl|UG|Mm#S10849802 Mus musculus 2 days pregnant adult female ovary
cDNA, RIKEN full-length enriched library,
clone:E330023L17 product:unclassifiable, full insert
sequence. /gb=AK087807 /gi=26104522 /ug=Mm.137673
/len=2850
Length = 2850
Score = 38.2 bits (19), Expect = 0.70
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 593 catgtatactgcctgcagaggag 615
|||||||| ||||||||||||||
Sbjct: 641 catgtatagtgcctgcagaggag 619
>gnl|UG|Mm#S8455398 BB364251 RIKEN full-length enriched, 16 days
embryo head Mus musculus cDNA clone C130020N06 3'.
/clone=C130020N06 /clone_end=3' /gb=BB364251 /gi=9076079
/ug=Mm.126700 /len=287
Length = 287
Score = 38.2 bits (19), Expect = 0.70
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 433 tcccaccactgcccagccc 451
|||||||||||||||||||
Sbjct: 264 tcccaccactgcccagccc 282
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154515
Number of Sequences: 230285
Number of extensions: 154515
Number of successful extensions: 12263
Number of sequences better than 10.0: 27
length of query: 917
length of database: 241,976,893
effective HSP length: 19
effective length of query: 898
effective length of database: 237,601,478
effective search space: 213366127244
effective search space used: 213366127244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)