>20030531C-003954 (20030531C-003954) 20030531C-003954 CTGAGACAGA GGCCCGGCAC AACCTTCCTG TGTGGTTTCA GCAGCCAAGA GTGACATGGA CCTGGGGAAG CCTATGAAGA AGAGCCTGCT GGTGGTGGCT CTCCTTGTCA TTTTCCAGGT GTGCCTGTGC CAGGATGAGG TCACGGACGA CTACATCGGC GACAACACCA CGGTGGACTA CACGCTGTAC GAGTCCGTGT GCTTCAAGAA GGACGTGCGG ACCTTTAAGG CCTGGTTCCT CCCGGTCATG TACTCCATCA TCTGCTTCGT GGGCCTGCTG GGCAACGGGC TGGTCATGCT GACCTACATC TATTTCAAGA GGCTCAAGAC CATGACCGAC ACGTACCTGC TCAACTTGGC CGTGGCCGAC ATCCTCTTCC TCCTGACCCT TCCCTTCTGG GCATACAGCG CGGCCAAGTC CTGGGTCTTC GGAGTCCACG TCTGCAAACT CATCTTCGGC ATCTACAAGA TCAGCTTCTT CAGCGGCATG CTTCTGCTTC TCTGCATCAG CATCGACCGC TACGTGGCCA TCGTGCAGGC CGTGTCGGCG CACCGCCACC GCGCCCGCGT GCTTCTCATC AGCAAGCTCT CCTGCGTGGG CATCTGGATG CTGGCCATGG TGCTGTCCAC GCCGGAGCTG CTGTACAGCG GCACCCAGAA GAGCAGCAGC GAGCAGGCGC TCCGGTGCTC CCTCATCACC GAGCACGTGG AGGCCCTGAT CACCATCCAG GTGGCCCAGA TGGTGGTGGG CTTTCTGATC CCCCTGGTGG CCATGAGCTT CTGCTACCTC GTCATCATCC GCACCCTGCT CCAGGCGCGC AACTTCGAGC GCAACAAGGC CCATCAGGTG ATCATCGCCG TGGTCGTGGT CTTCGTGGCC TTCCAGCTGC CCTACAACGG CGTGGTCCTG GCCCAGACGG TGGCCAATTT CAACATCACC AGCGGCACCA GCTG
Query= 20030531C-003954 (20030531C-003954) 20030531C-003954
(954 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S14562364 Sus scrofa CCR7 mRNA for chemokine recepto... 1737 0.0
Alignment gnl|UG|Hs#S1726407 Homo sapiens chemokine (C-C motif) receptor ... 979 0.0
Alignment gnl|UG|Mm#S8039354 Mus musculus chemokine (C-C motif) receptor ... 730 0.0
Alignment gnl|UG|Hs#S1728959 Homo sapiens coagulation factor II (thrombin... 50 2e-04
Alignment gnl|UG|Hs#S1731955 Homo sapiens galanin receptor 1 (GALR1), mRN... 46 0.003
Alignment gnl|UG|Mm#S8041400 Mus musculus interleukin 8 receptor, beta (I... 44 0.012
Alignment gnl|UG|Mm#S8042653 Mus musculus chemokine (C-C motif) receptor ... 44 0.012
Alignment gnl|UG|Bt#S12073031 Bos taurus interleukin 8 receptor, beta (IL... 44 0.012
Alignment gnl|UG|Hs#S1731688 Homo sapiens histamine receptor H3 (HRH3), m... 42 0.046
Alignment gnl|UG|Hs#S1731944 Homo sapiens angiotensin II receptor-like 1 ... 42 0.046
>gnl|UG|Ssc#S14562364 Sus scrofa CCR7 mRNA for chemokine receptor 7,
complete cds /cds=(1,1143) /gb=AB090356 /gi=28557109
/ug=Ssc.16629 /len=1143
Length = 1143
Score = 1737 bits (876), Expect = 0.0
Identities = 896/900 (99%), Gaps = 2/900 (0%)
Strand = Plus / Plus
Query: 56 atggacctggggaagcctatgaagaagagcctgctggtggtggctctccttgtcattttc 115
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggacctggggaagccgatgaagaagagcctgctggtggtggctctccttgtcattttc 60
Query: 116 caggtgtgcctgtgccaggatgaggtcacggacgactacatcggcgacaacaccacggtg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caggtgtgcctgtgccaggatgaggtcacggacgactacatcggcgacaacaccacggtg 120
Query: 176 gactacacgctgtacgagtccgtgtgcttcaagaaggacgtgcggacctttaaggcctgg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gactacacgctgtacgagtccgtgtgcttcaagaaggacgtgcggacctttaaggcctgg 180
Query: 236 ttcctcccggtcatgtactccatcatctgcttcgtgggcctgctgggcaacgggctggtc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcctcccggtcatgtactccatcatctgcttcgtgggcctgctgggcaacgggctggtc 240
Query: 296 atgctgacctacatctatttcaagaggctcaagaccatgaccgacacgtacctgctcaac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgctgacctacatctatttcaagaggctcaagaccatgaccgacacgtacctgctcaac 300
Query: 356 ttggccgtggccgacatcctcttcctcctgacccttcccttctgggcatacagcgcggcc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttggccgtggccgacatcctcttcctcctgacccttcccttctgggcatacagcgcggcc 360
Query: 416 aagtcctgggtcttcggagtccacgtctgcaaactcatcttcggcatctacaagatcagc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagtcctgggtcttcggagtccacgtctgcaaactcatcttcggcatctacaagatcagc 420
Query: 476 ttcttcagcggcatgcttctgcttctctgcatcagcatcgaccgctacgtggccatcgtg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcttcagcggcatgcttctgcttctctgcatcagcatcgaccgctacgtggccatcgtg 480
Query: 536 caggccgtgtcggcgcaccgccaccgcgcccgcgtgcttctcatcagcaagctctcctgc 595
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 481 caggccgtgtcggcgcaccgccaccgtgcccgcgtgcttctcatcagcaagctctcctgc 540
Query: 596 gtgggcatctggatgctggccatggtgctgtccacgccggagctgctgtacagcggcacc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgggcatctggatgctggccatggtgctgtccacgccggagctgctgtacagcggcacc 600
Query: 656 cagaagagcagcagcgagcaggcgctccggtgctccctcatcaccgagcacgtggaggcc 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagaagagcagcagcgagcaggcgctccggtgctccctcatcaccgagcacgtggaggcc 660
Query: 716 ctgatcaccatccaggtggcccagatggtggtgggctttctgatccccctggtggccatg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctgatcaccatccaggtggcccagatggtggtgggctttctgatccccctggtggccatg 720
Query: 776 agcttctgctacctcgtcatcatccgcaccctgctccaggcgcgcaacttcgagcgcaac 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agcttctgctacctcgtcatcatccgcaccctgctccaggcgcgcaacttcgagcgcaac 780
Query: 836 aaggcccatc-aggtgatcatcgccgtggtcgtggtcttcgtggccttccagctgcccta 894
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aagg-ccatcaaggtgatcatcgccgtggtcgtggtcttcgtggccttccagctgcccta 839
Query: 895 caacggcgtggtcctggcccagacggtggccaatttcaacatcaccagcggcaccagctg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 caacggcgtggtcctggcccagacggtggccaatttcaacatcaccagcggcaccagctg 899
>gnl|UG|Hs#S1726407 Homo sapiens chemokine (C-C motif) receptor 7
(CCR7), mRNA /cds=(67,1203) /gb=NM_001838 /gi=4502640
/ug=Hs.1652 /len=2139
Length = 2139
Score = 979 bits (494), Expect = 0.0
Identities = 829/936 (88%), Gaps = 6/936 (0%)
Strand = Plus / Plus
Query: 9 gaggcccggcacaaccttcctgtgtggtttcagcagcca-agagtgacatggacctgggg 67
|||||| |||||| |||||||||||||||| | | ||| |||| | |||||||||||||
Sbjct: 19 gaggccgggcacagccttcctgtgtggttttaccgcccagagagcgtcatggacctgggg 78
Query: 68 aagcctatgaagaagagcctgctggtggtggctctccttgtcattttccaggtgtgcctg 127
|| || || ||| ||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 79 aaaccaat---gaaaagcgtgctggtggtggctctccttgtcattttccaggtatgcctg 135
Query: 128 tgccaggatgaggtcacggacgactacatcggcgacaacaccacggtggactacacgctg 187
|| || ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct: 136 tgtcaagatgaggtcacggacgattacatcggagacaacaccacagtggactacactttg 195
Query: 188 tacgagtccgtgtgcttcaagaaggacgtgcggacctttaaggcctggttcctcccggtc 247
| |||||| |||||| ||||||||||||||||| |||||| |||||||||||||| ||
Sbjct: 196 ttcgagtctttgtgctccaagaaggacgtgcggaactttaaagcctggttcctccctatc 255
Query: 248 atgtactccatcatctgcttcgtgggcctgctgggcaacgggctggtcatgctgacctac 307
|||||||||||||| || ||||||||||| |||||||| ||||||||| || |||||||
Sbjct: 256 atgtactccatcatttgtttcgtgggcctactgggcaatgggctggtcgtgttgacctat 315
Query: 308 atctatttcaagaggctcaagaccatgaccgacacgtacctgctcaacttggccgtggcc 367
|||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||
Sbjct: 316 atctatttcaagaggctcaagaccatgaccgatacctacctgctcaacctggcggtggca 375
Query: 368 gacatcctcttcctcctgacccttcccttctgggcatacagcgcggccaagtcctgggtc 427
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 376 gacatcctcttcctcctgacccttcccttctgggcctacagcgcggccaagtcctgggtc 435
Query: 428 ttcggagtccacgtctgcaaactcatcttcggcatctacaagatcagcttcttcagcggc 487
||||| |||||| | ||||| |||||||| | |||||||||||| ||||||||||| |||
Sbjct: 436 ttcggtgtccacttttgcaagctcatctttgccatctacaagatgagcttcttcagtggc 495
Query: 488 atgcttctgcttctctgcatcagcatcgaccgctacgtggccatcgtgcaggccgtgtcg 547
||||| || ||||| ||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct: 496 atgctcctacttctttgcatcagcattgaccgctacgtggccatcgtccaggctgtctca 555
Query: 548 gcgcaccgccaccgcgcccgcgtgcttctcatcagcaagctctcctgcgtgggcatctgg 607
|| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 556 gctcaccgccaccgtgcccgcgtccttctcatcagcaagctgtcctgtgtgggcatctgg 615
Query: 608 atgctggccatggtgctgtccacgccggagctgctgtacagcggcacccagaagagcagc 667
|| || |||| ||||| |||| || ||||| |||||||| | | ||||| |||||||
Sbjct: 616 atactagccacagtgctctccatcccagagctcctgtacagtgacctccagaggagcagc 675
Query: 668 agcgagcaggcgctccggtgctccctcatcaccgagcacgtggaggccctgatcaccatc 727
|| ||||| ||| | || ||||| |||||||| ||||| ||||||||| | |||||||||
Sbjct: 676 agtgagcaagcgatgcgatgctctctcatcacagagcatgtggaggcctttatcaccatc 735
Query: 728 caggtggcccagatggtggtgggctttctgatccccctggtggccatgagcttctgctac 787
|||||||||||||||||| | ||||||||| |||||||| |||||||||||||||| |||
Sbjct: 736 caggtggcccagatggtgatcggctttctggtccccctgctggccatgagcttctgttac 795
Query: 788 ctcgtcatcatccgcaccctgctccaggcgcgcaacttcgagcgcaacaaggcccatc-a 846
|| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
Sbjct: 796 cttgtcatcatccgcaccctgctccaggcacgcaactttgagcgcaacaagg-ccatcaa 854
Query: 847 ggtgatcatcgccgtggtcgtggtcttcgtggccttccagctgccctacaacggcgtggt 906
|||||||||||| ||||||||||||||| | | |||||||||||||||||| || |||||
Sbjct: 855 ggtgatcatcgctgtggtcgtggtcttcatagtcttccagctgccctacaatggggtggt 914
Query: 907 cctggcccagacggtggccaatttcaacatcaccag 942
||||||||||||||||||||| ||||||||||||||
Sbjct: 915 cctggcccagacggtggccaacttcaacatcaccag 950
>gnl|UG|Mm#S8039354 Mus musculus chemokine (C-C motif) receptor 7
(Ccr7), mRNA /cds=(176,1312) /gb=NM_007719 /gi=6671771
/ug=Mm.2932 /len=2072
Length = 2072
Score = 730 bits (368), Expect = 0.0
Identities = 736/856 (85%), Gaps = 2/856 (0%)
Strand = Plus / Plus
Query: 87 tgctggtggtggctctccttgtcattttccaggtgtgcctgtgccaggatgaggtcacgg 146
|||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |
Sbjct: 204 tgctggtggtggctctccttgtcattttccaggtgtgcttctgccaagatgaggtcaccg 263
Query: 147 acgactacatcggcgacaacaccacggtggactacacgctgtacgagtccgtgtgcttca 206
| |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 264 atgactacatcggcgagaataccacggtggactacaccctgtacgagtcggtgtgcttca 323
Query: 207 agaaggacgtgcggacctttaaggcctggttcctcccggtcatgtactccatcatctgct 266
||||||| ||||||| |||||||||||||||||| || ||||||| || |||||||||
Sbjct: 324 agaaggatgtgcggaactttaaggcctggttcctgcctctcatgtattctgtcatctgct 383
Query: 267 tcgtgggcctgctgggcaacgggctggtcatgctgacctacatctatttcaagaggctca 326
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 384 tcgtgggcctgctcggcaacgggctggtgatactgacgtacatctatttcaagaggctca 443
Query: 327 agaccatgaccgacacgtacctgctcaacttggccgtggccgacatcctcttcctcctga 386
|||||||||| || || |||||||||||| |||||||||| |||||||| |||||||| |
Sbjct: 444 agaccatgacggatacctacctgctcaacctggccgtggcagacatccttttcctcctaa 503
Query: 387 cccttcccttctgggcatacagcgcggccaagtcctgggtcttcggagtccacgtctgca 446
|||||||||||||| ||||||| |||||||||||| |||| || ||| || | || |
Sbjct: 504 ttcttcccttctgggcctacagcgaagccaagtcctggatctttggcgtctacctgtgta 563
Query: 447 aactcatcttcggcatctacaagatcagcttcttcagcggcatgcttctgcttctctgca 506
| |||||| |||||||| ||| | |||||||||||||| ||||| ||||| || ||||
Sbjct: 564 agggcatctttggcatctataagttaagcttcttcagcgggatgctgctgctcctatgca 623
Query: 507 tcagcatcgaccgctacgtggccatcgtgcaggccgtgtcggcgcaccgccaccgcgccc 566
||||||| ||||||||||| |||||||| |||||||||||| || |||||||||||||
Sbjct: 624 tcagcattgaccgctacgtagccatcgtccaggccgtgtcgcgtcatcgccaccgcgccc 683
Query: 567 gcgtgcttctcatcagcaagctctcctgcgtgggcatctggatgctggccatggtgctgt 626
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | | || |
Sbjct: 684 gcgtgcttctcatcagcaagctgtcctgtgtgggcatctggatgctggccctcttcctct 743
Query: 627 ccacgccggagctgctgtacagcggcacccagaagagcagcagcgagcaggcgctccggt 686
||| ||||||||||| ||||||||| |||||||| |||| ||||| | |||| | |
Sbjct: 744 ccatcccggagctgctctacagcggcctccagaagaacagcggcgaggacacgctgagat 803
Query: 687 gctccctcatcaccgagcacgtggaggccctgatcaccatccaggtggcccagatggtgg 746
|||| || ||| | || ||||||||| ||||||||||||| ||||||||||||||
Sbjct: 804 gctcactggtcagtgcccaagtggaggccttgatcaccatccaagtggcccagatggttt 863
Query: 747 tgggctttctgatccccctggtggccatgagcttctgctacctcgtcatcatccgcaccc 806
| || || || | || || |||| ||||| |||||||||||| | |||||||| |||
Sbjct: 864 ttgggttcctagtgcctatgctggctatgagtttctgctacctcattatcatccgtacct 923
Query: 807 tgctccaggcgcgcaacttcgagcgcaacaaggcccatc-aggtgatcatcgccgtggtc 865
|||||||||| |||||||| ||||| ||||||| ||||| |||||||||| ||||||||
Sbjct: 924 tgctccaggcacgcaactttgagcggaacaagg-ccatcaaggtgatcattgccgtggtg 982
Query: 866 gtggtcttcgtggccttccagctgccctacaacggcgtggtcctggcccagacggtggcc 925
|| |||||| | | |||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 983 gtagtcttcatagtcttccagctgccctacaatggggtggtcctggctcagacggtggcc 1042
Query: 926 aatttcaacatcacca 941
|| |||||||||||||
Sbjct: 1043 aacttcaacatcacca 1058
>gnl|UG|Hs#S1728959 Homo sapiens coagulation factor II (thrombin)
receptor-like 2 (F2RL2), mRNA /cds=(145,1269)
/gb=NM_004101 /gi=4758325 /ug=Hs.194351 /len=1830
Length = 1830
Score = 50.1 bits (25), Expect = 2e-04
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 502 ctgcatcagcatcgaccgctacgtggccatcgt 534
||||||||||||| |||||||| ||||||||||
Sbjct: 699 ctgcatcagcatcaaccgctacctggccatcgt 731
>gnl|UG|Hs#S1731955 Homo sapiens galanin receptor 1 (GALR1), mRNA
/cds=(773,1822) /gb=NM_001480 /gi=6031165 /ug=Hs.272191
/len=3056
Length = 3056
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 515 gaccgctacgtggccatcgtgca 537
|||||||||||||||||||||||
Sbjct: 1166 gaccgctacgtggccatcgtgca 1188
>gnl|UG|Mm#S8041400 Mus musculus interleukin 8 receptor, beta
(Il8rb), mRNA /cds=(142,1221) /gb=NM_009909 /gi=6753455
/ug=Mm.11756 /len=1858
Length = 1858
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 502 ctgcatcagcatcgaccgctacgtggccat 531
|||||||||||| ||||||||| |||||||
Sbjct: 552 ctgcatcagcatggaccgctacctggccat 581
>gnl|UG|Mm#S8042653 Mus musculus chemokine (C-C motif) receptor 4
(Ccr4), mRNA /cds=(136,1218) /gb=NM_009916 /gi=6857772
/ug=Mm.1337 /len=1531
Length = 1531
Score = 44.1 bits (22), Expect = 0.012
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 316 caagaggctcaagaccatgaccgacacgtacctgctcaacttggcc 361
||||||||||||| ||||||| ||| ||||||||| ||| |||||
Sbjct: 336 caagaggctcaagtccatgacggacgtgtacctgctgaacctggcc 381
>gnl|UG|Bt#S12073031 Bos taurus interleukin 8 receptor, beta
(IL8RB), mRNA /cds=(1,1083) /gb=NM_174360 /gi=27805942
/ug=Bt.4208 /len=1083
Length = 1083
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 502 ctgcatcagcatcgaccgctacgtggccat 531
|||||||||||| ||||||||| |||||||
Sbjct: 414 ctgcatcagcatggaccgctacctggccat 443
>gnl|UG|Hs#S1731688 Homo sapiens histamine receptor H3 (HRH3), mRNA
/cds=(299,1636) /gb=NM_007232 /gi=6005781 /ug=Hs.251399
/len=2699
Length = 2699
Score = 42.1 bits (21), Expect = 0.046
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 276 tgctgggcaacgggctggtcatgct 300
|||||||||||| ||||||||||||
Sbjct: 444 tgctgggcaacgcgctggtcatgct 468
>gnl|UG|Hs#S1731944 Homo sapiens angiotensin II receptor-like 1
(AGTRL1), mRNA /cds=(1,1143) /gb=NM_005161 /gi=4885056
/ug=Hs.9305 /len=1143
Length = 1143
Score = 42.1 bits (21), Expect = 0.046
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 507 tcagcatcgaccgctacgtggccatcgtg 535
||||| ||||||||||| |||||||||||
Sbjct: 368 tcagcttcgaccgctacctggccatcgtg 396
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146887
Number of Sequences: 230285
Number of extensions: 146887
Number of successful extensions: 13152
Number of sequences better than 10.0: 47
length of query: 954
length of database: 241,976,893
effective HSP length: 19
effective length of query: 935
effective length of database: 237,601,478
effective search space: 222157381930
effective search space used: 222157381930
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)