Search to UniGene2 database
Query= 20030531S-006050 (20030531S-006050) 20030531S-006050
(1107 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, compl... 283 8e-75
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds... 220 1e-55
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7... 208 4e-52
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clo... 161 8e-38
Alignment gnl|UG|Mm#S10840510 Mus musculus 7 days embryo whole body cDNA,... 153 2e-35
Alignment gnl|UG|Hs#S4413560 AGENCOURT_7576729 NIH_MGC_68 Homo sapiens cD... 66 4e-09
Alignment gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA /cds... 66 4e-09
Alignment gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scro... 66 4e-09
Alignment gnl|UG|Hs#S4616662 Homo sapiens cDNA FLJ37458 fis, clone BRAWH2... 42 0.054
Alignment gnl|UG|Hs#S1569967 Homo sapiens mRNA; cDNA DKFZp586K1520 (from ... 40 0.21
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 283 bits (143), Expect = 8e-75
Identities = 197/215 (91%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 60
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 61 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 120
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaactcgctgat 296
||||| |||||||||||| |||| |||||| |||||| ||| ||||||||||||| |||
Sbjct: 121 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 180
Query: 297 gaggacttggatttggctcatgaacgactggccac 331
||||| ||||| |||||| ||||||||||||||
Sbjct: 181 gaggagttggacagggctcaggaacgactggccac 215
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 220 bits (111), Expect = 1e-55
Identities = 189/215 (87%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaactcgctgat 296
||||| |||||||| ||| | || || || | |||| || |||||||| |||| |||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtggccgccctcaaccgacgcatccagctcgttgag 230
Query: 297 gaggacttggatttggctcatgaacgactggccac 331
||||| ||||| |||||| ||||||||||||||
Sbjct: 231 gaggagttggacagggctcaggaacgactggccac 265
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397. /gb=AK056565 /gi=16552003 /ug=Hs.211221
/len=3108
Length = 3108
Score = 208 bits (105), Expect = 4e-52
Identities = 126/133 (94%)
Strand = Plus / Minus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 831 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 772
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 771 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 712
Query: 237 cggcgtgagaaag 249
||||| |||||||
Sbjct: 711 cggcgcgagaaag 699
Score = 42.1 bits (21), Expect = 0.054
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 23 gggggccggggcgcggctgctgcagctct 51
||||||||||||||||||| |||||||||
Sbjct: 920 gggggccggggcgcggctg-tgcagctct 893
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 161 bits (81), Expect = 8e-38
Identities = 150/173 (86%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
|| ||||| ||||| ||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaact 289
||||| |||||||| ||| | || | ||| |||||| ||||||||||||||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaact 210
>gnl|UG|Mm#S10840510 Mus musculus 7 days embryo whole body cDNA,
RIKEN full-length enriched library, clone:C430002D13
product:TROPOMYOSIN 4 homolog [Homo sapiens], full
insert sequence. /cds=(66,578) /gb=AK049383 /gi=26340121
/ug=Mm.102692 /len=2064
Length = 2064
Score = 153 bits (77), Expect = 2e-35
Identities = 119/133 (89%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 66 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 125
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
|| ||||| ||||| ||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct: 126 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 185
Query: 237 cggcgtgagaaag 249
||||| |||||||
Sbjct: 186 cggcgcgagaaag 198
>gnl|UG|Hs#S4413560 AGENCOURT_7576729 NIH_MGC_68 Homo sapiens cDNA
clone IMAGE:6058831 5', mRNA sequence
/clone=IMAGE:6058831 /clone_end=5' /gb=BQ220650
/gi=20402050 /ug=Hs.446514 /len=1018
Length = 1018
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 37 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 77
>gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA
/cds=(52,798) /gb=NM_153649 /gi=24119202 /ug=Hs.85844
/len=2089
Length = 2089
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 73 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 113
>gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-aj-f-09-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-aj-f-09-0-UNL /clone_end=3' /gb=BI181413
/gi=14655822 /ug=Ssc.1829 /len=714
Length = 714
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 101 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 141
>gnl|UG|Hs#S4616662 Homo sapiens cDNA FLJ37458 fis, clone
BRAWH2011166, moderately similar to TROPOMYOSIN 5,
CYTOSKELETAL TYPE. /gb=AK094777 /gi=21753905
/ug=Hs.433293 /len=2870
Length = 2870
Score = 42.1 bits (21), Expect = 0.054
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||| ||||| |||||||||||||| |||| ||| |||||
Sbjct: 228 gaggcagtgaagcgcaagatccaggttctgcggcaccaggc 268
>gnl|UG|Hs#S1569967 Homo sapiens mRNA; cDNA DKFZp586K1520 (from
clone DKFZp586K1520) /cds=(1,680) /gb=AL050153
/gi=4884364 /ug=Hs.225987 /len=2659
Length = 2659
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 219 ctggacggcgagcgcgagcg 238
||||||||||||||||||||
Sbjct: 308 ctggacggcgagcgcgagcg 327
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167325
Number of Sequences: 230285
Number of extensions: 167325
Number of successful extensions: 13832
Number of sequences better than 10.0: 33
length of query: 1107
length of database: 241,976,893
effective HSP length: 19
effective length of query: 1088
effective length of database: 237,601,478
effective search space: 258510408064
effective search space used: 258510408064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)