Search to UniGene2 database
Query= 20030531S-007138 (20030531S-007138) 20030531S-007138
(749 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, compl... 220 7e-56
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mR... 174 4e-42
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds... 131 5e-29
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7... 131 5e-29
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRN... 117 8e-25
Alignment gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), m... 103 1e-20
Alignment gnl|UG|Bt#S12041279 LM24HW00316 Bos taurus LM-24-HW cDNA librar... 98 7e-19
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mR... 94 1e-17
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA c... 94 1e-17
Alignment gnl|UG|Hs#S11138918 BX095105 Soares_testis_NHT Homo sapiens cDN... 68 6e-10
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 220 bits (111), Expect = 7e-56
Identities = 135/143 (94%)
Strand = Plus / Plus
Query: 308 gccgaaggggatgtagcagctcttaatcggcgcatccaactcgttgaggaggagttggac 367
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 133 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 192
Query: 368 agggctcaggaacgactggccacagccctgcagaagcttgaggagggagaaaggggtggg 427
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 193 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 252
Query: 428 gatgagatcgagagatgaatgaa 450
||||||| ||||||| |||||||
Sbjct: 253 gatgagagcgagagaggaatgaa 275
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 174 bits (88), Expect = 4e-42
Identities = 154/176 (87%)
Strand = Plus / Plus
Query: 65 gccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 175
Query: 125 gaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtg 184
||||| ||||||||||| || | || ||||| |||||||| ||||||||| ||
Sbjct: 176 gaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagctg 235
Query: 185 gaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctgga 240
|||||||||| | | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 236 gaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtgga 291
Score = 71.9 bits (36), Expect = 4e-11
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 350 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 409
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 401 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 460
Query: 410 gagg 413
||||
Sbjct: 461 gagg 464
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 131 bits (66), Expect = 5e-29
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 338 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 397
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 213 cgcatccagctcgttgaggaggagttggacagggctcaggaacgactggccacggccctg 272
Query: 398 cagaagcttgaggagggagaaa 419
|||||||| ||||||| |||||
Sbjct: 273 cagaagctggaggaggcagaaa 294
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397. /gb=AK056565 /gi=16552003 /ug=Hs.211221
/len=3108
Length = 3108
Score = 131 bits (66), Expect = 5e-29
Identities = 114/130 (87%)
Strand = Plus / Minus
Query: 179 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 238
||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 1353 caggtggaggaggagctgacgcacctccagaagaaactaaaagggacagaggacgagctg 1294
Query: 239 gacaaatacttccagaacctgaaggacgcgcaggaaaagctggagttgagcaagaagaaa 298
|| ||||| | | || ||||||||||||||||||| ||||||||| | | |||||||
Sbjct: 1293 gataaatattccgaggacctgaaggacgcgcaggagaagctggagctcacggagaagaag 1234
Query: 299 gcctccgacg 308
||||||||||
Sbjct: 1233 gcctccgacg 1224
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 117 bits (59), Expect = 8e-25
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 63 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 122
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 123 tcgaccgggccgagcaggc 141
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 81.8 bits (41), Expect = 4e-14
Identities = 191/241 (79%)
Strand = Plus / Plus
Query: 173 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 232
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 233 gagctggacaaatacttccagaacctgaaggacgcgcaggaaaagctggagttgagcaag 292
||| |||| || || | | || | ||||||| || ||||| || |||||| | ||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 293 aagaaagcctccgacgccgaaggggatgtagcagctcttaatcggcgcatccaactcgtt 352
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 353 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 412
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 413 g 413
|
Sbjct: 380 g 380
>gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), mRNA
/cds=(151,1005) /gb=NM_000366 /gi=27597084 /ug=Hs.77899
/len=1265
Length = 1265
Score = 103 bits (52), Expect = 1e-20
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 66 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 125
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 149 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaggagaacgccttgg 208
Query: 126 accgggccgagcaggcggag 145
| || || ||||||||||||
Sbjct: 209 atcgagctgagcaggcggag 228
>gnl|UG|Bt#S12041279 LM24HW00316 Bos taurus LM-24-HW cDNA library
Bos taurus cDNA clone LM-24-HW-003-16 (5'), mRNA
sequence /clone=LM-24-HW-003-16_(5') /gb=BM888875
/gi=19277621 /ug=Bt.9448 /len=767
Length = 767
Score = 97.6 bits (49), Expect = 7e-19
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 68 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgc 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 atggaggccatcaagaaaaagatgcagatgctgaagctggacaaggagaacgc 120
Score = 60.0 bits (30), Expect = 2e-07
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 206 cagaagaagctgaaggggacagaggatgagctggacaa 243
|||||||||||||| ||||||||||| |||||||||||
Sbjct: 206 cagaagaagctgaaagggacagaggacgagctggacaa 243
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(37,891) /gb=NM_024427 /gi=13270470 /ug=Mm.121878
/len=1159
Length = 1159
Score = 93.7 bits (47), Expect = 1e-17
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 66 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 125
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 35 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 94
Query: 126 accgggccgagcaggcggagtcggataagaa 156
| || || ||||| |||||| | ||||||||
Sbjct: 95 atcgagctgagcaagcggaggctgataagaa 125
Score = 79.8 bits (40), Expect = 2e-13
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 338 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 397
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 307 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 366
Query: 398 cagaagcttgaggagg 413
|||||||| |||||||
Sbjct: 367 cagaagctggaggagg 382
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 93.7 bits (47), Expect = 1e-17
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 74 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 133
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 134 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 193
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 194 ctg 196
|||
Sbjct: 123 ctg 125
Score = 56.0 bits (28), Expect = 2e-06
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 338 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 397
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 267 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 326
Query: 398 cagaagcttgaggagg 413
||||| ||||||||||
Sbjct: 327 cagaaacttgaggagg 342
>gnl|UG|Hs#S11138918 BX095105 Soares_testis_NHT Homo sapiens cDNA
clone IMAGp998E171864, mRNA sequence
/clone=IMAGp998E171864_;_IMAGE:758008 /gb=BX095105
/gi=27842235 /ug=Hs.178468 /len=472
Length = 472
Score = 67.9 bits (34), Expect = 6e-10
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 206 cagaagaagctgaaggggacagaggatgagctggacaa 243
|||||||||||||| |||||||||||||||||||||||
Sbjct: 174 cagaagaagctgaaagggacagaggatgagctggacaa 211
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142157
Number of Sequences: 230285
Number of extensions: 142157
Number of successful extensions: 13600
Number of sequences better than 10.0: 131
length of query: 749
length of database: 241,976,893
effective HSP length: 19
effective length of query: 730
effective length of database: 237,601,478
effective search space: 173449078940
effective search space used: 173449078940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)