>20030531S-010687 (20030531S-010687) 20030531S-010687 AGCAGCGTCA TGGCGCGCTT CTTCCGCGCG GGCCCGGGCT TACCCTTCCG AGAGGTGCTC TCGCGGGCAG TGTGGGGTCG TGCCGACAAT GGCGGCCTCA GCCCGAAGGT CGGAACCGGA GACGCAGGGT CCCTTACAAA GCGTGAGCCG TTCCTCTCCA AGAGTGAGTG GCAAAAGAAG CTGACTCCAG AGCGATTCCA CGTCACGAGA GAAAAAGGGA CAGAACCGCC TTTCAGTGGG ACCTACCTGA ATAACAAGGA AGCAGGAATG TATCACTGTG TGTGCTGTGA CAGCCCACTC TTCAGCTCTG AGAAAAAGTA CTGCTCTGGC ACTGGATGGC CTTCATTTTC TGAGGCTCAC GGCACATCTG GCTCTGATGA GAGTGACACA GGGATCCTGA GACGTGTGGA CACCTCGCTG GGAACAGCTC GCACGGAGGT TGTCTGCAAG CAGTGCGAAG CTCACCTTGG CCATGTGTTT CCTGATGGAC CTGGGCCTAC AGGTCAGAGG TTTTGCATCA ACAGTGTGGC ACTCAAGTTC AAACCAAGGA AACACTGACC ATCGCCAGGA GTCCCTTTCT CTTCCACCCT CTCATTTCCA AACTCGATTT TCATAATTTA TGCAAATGAC TAGTTTTATT AATGACCAAA CTAGGCTAAG CTTGCTGGCA TACCTTCTCT AATTCATTAC CTGGAGTCAG CTCCACCCTG GCTCTGGCTC TGACTAGAAT TTCACGGAAT GACAGAGGGG CAGTCCTTTC CCTTAAATCA ACATCTGTGG GCTTTTGCCC AGGACCAGAG GGCATGACTC TTTTGGGGAC ATTANGAGGC TGATGGATAA GCCAAAGAAC TCCTATAAAA CTATGCTGAA TTTTCCATTG CAGTCAAGTG TTTCACAAAC TTGTATAGGT
Query= 20030531S-010687 (20030531S-010687) 20030531S-010687
(910 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6072895 UNL-P-FN-bi-d-04-0-UNL.s1 UNL-P-FN Sus scro... 745 0.0
Alignment gnl|UG|Hs#S1824499 Homo sapiens pilin-like transcription factor... 472 e-131
Alignment gnl|UG|Mm#S9707197 Mus musculus RIKEN cDNA 2310050L06 gene (231... 270 1e-70
Alignment gnl|UG|Ssc#S6075443 UNL-P-FN-cu-b-04-0-UNL.s1 UNL-P-FN Sus scro... 248 4e-64
Alignment gnl|UG|Bt#S12052296 481179 MARC 2BOV Bos taurus cDNA 5', mRNA s... 76 3e-12
Alignment gnl|UG|Hs#S1799743 UI-H-BI3-alk-f-07-0-UI.s1 NCI_CGAP_Sub5 Homo... 38 0.69
Alignment gnl|UG|Mm#S9587533 K0828E08-3 NIA Mouse 8.5-dpc Whole Embryo cD... 38 0.69
Alignment gnl|UG|Mm#S8762011 Mus musculus PAX interacting (with transcrip... 38 0.69
Alignment gnl|UG|Bt#S12371394 BTU602600435.R1 CSEQFXL04 small intestine B... 38 0.69
Alignment gnl|UG|Hs#S2512740 601658629R1 NIH_MGC_69 Homo sapiens cDNA clo... 36 2.7
>gnl|UG|Ssc#S6072895 UNL-P-FN-bi-d-04-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-bi-d-04-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-bi-d-04-0-UNL /clone_end=3' /gb=BI182422
/gi=14656831 /ug=Ssc.11012 /len=761
Length = 761
Score = 745 bits (376), Expect = 0.0
Identities = 438/452 (96%), Gaps = 7/452 (1%)
Strand = Plus / Minus
Query: 459 agctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggttttgcat 518
||||||||| ||||||||||| ||||| | ||| |||||||||||||||||||| ||||
Sbjct: 758 agctcacct-ggccatgtgtt-cctgang-acccnggcctacaggtcagaggttt-gcat 703
Query: 519 caacagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggagtcccttt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 caacagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggagtcccttt 643
Query: 579 ctcttccaccctctcatttccaaactcgattttcataatttatgcaaatgactagtttta 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctcttccaccctctcatttccaaactcgattttcataatttatgcaaatgactagtttta 583
Query: 639 ttaatgaccaaactaggctaagcttgctggcataccttctctaattcattacctggagtc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttaatgaccaaactaggctaagcttgctggcataccttctctaattcattacctggagtc 523
Query: 699 agctccaccctggctctggctctgactagaatttcacggaatgacagaggggcagtcctt 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agctccaccctggctctggctctgactagaatttcacggaatgacagaggggcagtcctt 463
Query: 759 tcccttaaatcaacatctgtgggcttttgcccaggaccagagggcatgactcttttgggg 818
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 462 tcccttaaatcaacatctgtgggctttg--ccaggaccagagggcatgactcttt-gggg 406
Query: 819 acattangaggctgatggataagccaaagaactcctataaaactatgctgaattttccat 878
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acattaggaggctgatggataagccaaagaactcctataaaactatgctgaattttccat 346
Query: 879 tgcagtcaagtgtttcacaaacttgtataggt 910
||||||||||||||||||| || |||||||||
Sbjct: 345 tgcagtcaagtgtttcacagacatgtataggt 314
>gnl|UG|Hs#S1824499 Homo sapiens pilin-like transcription factor
(PILB), mRNA /cds=(3,608) /gb=NM_012228 /gi=20149599
/ug=Hs.419780 /len=903
Length = 903
Score = 472 bits (238), Expect = e-131
Identities = 364/406 (89%)
Strand = Plus / Plus
Query: 158 ccaagagtgagtggcaaaagaagctgactccagagcgattccacgtcacgagagaaaaag 217
|||||||||||||||||||||| || || || |||| ||| ||||||| |||||||| |
Sbjct: 208 ccaagagtgagtggcaaaagaaactaaccccggagcagttctacgtcacaagagaaaagg 267
Query: 218 ggacagaaccgcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcact 277
| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 268 gaacggaaccgcctttcagtgggatctacctgaataacaaggaagcaggaatgtatcatt 327
Query: 278 gtgtgtgctgtgacagcccactcttcagctctgagaaaaagtactgctctggcactggat 337
| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 328 gcgtgtgctgcgacagtccactcttcagttctgagaaaaagtactgctctggcactgggt 387
Query: 338 ggccttcattttctgaggctcacggcacatctggctctgatgagagtgacacagggatcc 397
||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||
Sbjct: 388 ggccttcgttttctgaggctcatggtacgtctggctctgatgaaagccacacagggatcc 447
Query: 398 tgagacgtgtggacacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcg 457
|||||||| |||| |||||| | ||| |||||||||| |||||||||||||||||||| |
Sbjct: 448 tgagacgtctggatacctcgttaggatcagctcgcacagaggttgtctgcaagcagtgtg 507
Query: 458 aagctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggttttgca 517
||||||| || || || ||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 508 aagctcatctaggtcacgtgtttcctgatggacctgggcccaatggtcagaggttttgca 567
Query: 518 tcaacagtgtggcactcaagttcaaaccaaggaaacactgaccatc 563
||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 568 tcaacagtgtggctttgaagttcaaaccaaggaaacactgaccatc 613
>gnl|UG|Mm#S9707197 Mus musculus RIKEN cDNA 2310050L06 gene
(2310050L06Rik), mRNA /cds=(48,575) /gb=NM_029619
/gi=27753987 /ug=Mm.27166 /len=1204
Length = 1204
Score = 270 bits (136), Expect = 1e-70
Identities = 292/344 (84%)
Strand = Plus / Plus
Query: 202 gtcacgagagaaaaagggacagaaccgcctttcagtgggacctacctgaataacaaggaa 261
||||| ||||| ||||| || ||| ||||||||||||| | || |||| ||||||||
Sbjct: 219 gtcaccagagagaaaggaactgaagcgcctttcagtggaatgtatttgaacaacaaggag 278
Query: 262 gcaggaatgtatcactgtgtgtgctgtgacagcccactcttcagctctgagaaaaagtac 321
|||| ||||| || |||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 279 acagggatgtaccattgtgtgtgctgtgatagcccactcttcagttctgagaagaagtac 338
Query: 322 tgctctggcactggatggccttcattttctgaggctcacggcacatctggctctgatgag 381
|| |||||||| || ||||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 339 tgttctggcaccggctggccttcattttctgaggcttacggctcaaaaggctcagatgaa 398
Query: 382 agtgacacagggatcctgagacgtgtggacacctcgctgggaacagctcgcacggaggtt 441
||| ||||||||||||||||||| ||||||| || | ||| |||||| ||||||
Sbjct: 399 agtcacacagggatcctgagacgactggacacttccttaggatgtcctcgcatggaggtg 458
Query: 442 gtctgcaagcagtgcgaagctcaccttggccatgtgtttcctgatggacctgggcctaca 501
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 459 gtctgcaagcagtgtgaagctcaccttggccatgtgtttcctgatggacccaagcccact 518
Query: 502 ggtcagaggttttgcatcaacagtgtggcactcaagttcaaacc 545
|| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 519 ggccaaaggttttgcatcaacagtgtggccctgaagttcaaacc 562
>gnl|UG|Ssc#S6075443 UNL-P-FN-cu-b-04-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-cu-b-04-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-cu-b-04-0-UNL /clone_end=3' /gb=BI185322
/gi=14659731 /ug=Ssc.11418 /len=734
Length = 734
Score = 248 bits (125), Expect = 4e-64
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 4 agcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctctcg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 agcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctctcg 112
Query: 64 cgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagac 172
Query: 124 gcagg 128
|||||
Sbjct: 173 gcagg 177
>gnl|UG|Bt#S12052296 481179 MARC 2BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=BI899213 /gi=16204144
/ug=Bt.10925 /len=549
Length = 549
Score = 75.8 bits (38), Expect = 3e-12
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 688 tacctggagtcagctccaccctggctctggctctgactagaatttcacggaatgacagag 747
|||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 7 tacctggagtcaactcagccctggctctggctttgactagaatttcacaaaatgacagag 66
Query: 748 gg 749
||
Sbjct: 67 gg 68
>gnl|UG|Hs#S1799743 UI-H-BI3-alk-f-07-0-UI.s1 NCI_CGAP_Sub5 Homo
sapiens cDNA clone IMAGE:2737284 3', mRNA sequence
/clone=IMAGE:2737284 /clone_end=3' /gb=AW451838
/gi=6992614 /ug=Hs.437616 /len=702
Length = 702
Score = 38.2 bits (19), Expect = 0.69
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 404 gtgtggacacctcgctggg 422
|||||||||||||||||||
Sbjct: 358 gtgtggacacctcgctggg 376
>gnl|UG|Mm#S9587533 K0828E08-3 NIA Mouse 8.5-dpc Whole Embryo cDNA
Library (Long) Mus musculus cDNA clone K0828E08 3', mRNA
sequence /clone=K0828E08 /clone_end=3' /gb=BM249121
/gi=17884391 /ug=Mm.217465 /len=234
Length = 234
Score = 38.2 bits (19), Expect = 0.69
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 749 ggcagtcctttcccttaaa 767
|||||||||||||||||||
Sbjct: 160 ggcagtcctttcccttaaa 142
>gnl|UG|Mm#S8762011 Mus musculus PAX interacting (with
transcription-activation domain) protein 1 (Paxip1), mRNA
/cds=(272,3442) /gb=NM_018878 /gi=9256631 /ug=Mm.9558
/len=3882
Length = 3882
Score = 38.2 bits (19), Expect = 0.69
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 175 aagaagctgactccagagc 193
|||||||||||||||||||
Sbjct: 2807 aagaagctgactccagagc 2825
>gnl|UG|Bt#S12371394 BTU602600435.R1 CSEQFXL04 small intestine Bos
taurus cDNA, mRNA sequence /gb=CB166879 /gi=28153004
/ug=Bt.16072 /len=759
Length = 759
Score = 38.2 bits (19), Expect = 0.69
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 633 gttttattaatgaccaaac 651
|||||||||||||||||||
Sbjct: 731 gttttattaatgaccaaac 749
>gnl|UG|Hs#S2512740 601658629R1 NIH_MGC_69 Homo sapiens cDNA clone
IMAGE:3886158 3', mRNA sequence /clone=IMAGE:3886158
/clone_end=3' /gb=BE964517 /gi=11767985 /ug=Hs.418941
/len=1436
Length = 1436
Score = 36.2 bits (18), Expect = 2.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 397 ctgagacgtgtggacacc 414
||||||||||||||||||
Sbjct: 380 ctgagacgtgtggacacc 363
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130817
Number of Sequences: 230285
Number of extensions: 130817
Number of successful extensions: 10022
Number of sequences better than 10.0: 20
length of query: 910
length of database: 241,976,893
effective HSP length: 19
effective length of query: 891
effective length of database: 237,601,478
effective search space: 211702916898
effective search space used: 211702916898
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)