Search to UniGene2 database
Query= 20030531S-011320 (20030531S-011320) 20030531S-011320
(366 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, compl... 234 2e-60
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds... 188 1e-46
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7... 176 5e-43
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clo... 145 2e-33
Alignment gnl|UG|Mm#S10840510 Mus musculus 7 days embryo whole body cDNA,... 137 4e-31
Alignment gnl|UG|Hs#S4413560 AGENCOURT_7576729 NIH_MGC_68 Homo sapiens cD... 56 1e-06
Alignment gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA /cds... 56 1e-06
Alignment gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scro... 56 1e-06
Alignment gnl|UG|Hs#S3219970 Homo sapiens xylosyltransferase II (XT2), mR... 40 0.068
Alignment gnl|UG|Hs#S3355679 Homo sapiens phosphatidylglycerophosphate sy... 38 0.27
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 234 bits (118), Expect = 2e-60
Identities = 139/146 (95%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 60
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 61 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 120
Query: 246 cggtgggagaaagccgaaggggatgt 271
||| ||||||||||||||||||||||
Sbjct: 121 cggcgggagaaagccgaaggggatgt 146
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 188 bits (95), Expect = 1e-46
Identities = 134/147 (91%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
||||||||||| || || | |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 246 cggtgggagaaagccgaaggggatgtg 272
||| | |||||||| ||||| ||||||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtg 197
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397. /gb=AK056565 /gi=16552003 /ug=Hs.211221
/len=3108
Length = 3108
Score = 176 bits (89), Expect = 5e-43
Identities = 122/133 (91%)
Strand = Plus / Minus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 831 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 772
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
||||||||||| || || | |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 771 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 712
Query: 246 cggtgggagaaag 258
||| | |||||||
Sbjct: 711 cggcgcgagaaag 699
Score = 50.1 bits (25), Expect = 7e-05
Identities = 54/60 (90%), Gaps = 4/60 (6%)
Strand = Plus / Minus
Query: 2 ggggcggccccccggcgtaggcaaaggctcggggg-ccggggcgcggctgctgcagctct 60
|||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 949 ggggcggccccc--gcgcaggcaaaggcttggggggccggggcgcggctg-tgcagctct 893
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 145 bits (73), Expect = 2e-33
Identities = 127/145 (87%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
|| ||||| |||||||||| |||||| ||||||||| | || ||||| ||||| ||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 246 cggtgggagaaagccgaaggggatg 270
||| | |||||||| ||||| ||||
Sbjct: 158 cggcgcgagaaagctgaaggagatg 182
>gnl|UG|Mm#S10840510 Mus musculus 7 days embryo whole body cDNA,
RIKEN full-length enriched library, clone:C430002D13
product:TROPOMYOSIN 4 homolog [Homo sapiens], full
insert sequence. /cds=(66,578) /gb=AK049383 /gi=26340121
/ug=Mm.102692 /len=2064
Length = 2064
Score = 137 bits (69), Expect = 4e-31
Identities = 117/133 (87%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct: 66 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 125
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
|| ||||| |||||||||| |||||| ||||||||| | || ||||| ||||| ||||||
Sbjct: 126 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 185
Query: 246 cggtgggagaaag 258
||| | |||||||
Sbjct: 186 cggcgcgagaaag 198
>gnl|UG|Hs#S4413560 AGENCOURT_7576729 NIH_MGC_68 Homo sapiens cDNA
clone IMAGE:6058831 5', mRNA sequence
/clone=IMAGE:6058831 /clone_end=5' /gb=BQ220650
/gi=20402050 /ug=Hs.446514 /len=1018
Length = 1018
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 37 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 92
>gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA
/cds=(52,798) /gb=NM_153649 /gi=24119202 /ug=Hs.85844
/len=2089
Length = 2089
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 73 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 128
>gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-aj-f-09-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-aj-f-09-0-UNL /clone_end=3' /gb=BI181413
/gi=14655822 /ug=Ssc.1829 /len=714
Length = 714
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 101 gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagagga 156
>gnl|UG|Hs#S3219970 Homo sapiens xylosyltransferase II (XT2), mRNA
/cds=(110,2707) /gb=NM_022167 /gi=11545913 /ug=Hs.32117
/len=3568
Length = 3568
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 167 ccaggccctgcagcagcagg 186
||||||||||||||||||||
Sbjct: 200 ccaggccctgcagcagcagg 181
>gnl|UG|Hs#S3355679 Homo sapiens phosphatidylglycerophosphate synthase
(PGS1), mRNA /cds=(309,1652) /gb=NM_024419 /gi=21314623
/ug=Hs.162604 /len=2177
Length = 2177
Score = 38.2 bits (19), Expect = 0.27
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 167 ccaggccctgcagcagcag 185
|||||||||||||||||||
Sbjct: 1505 ccaggccctgcagcagcag 1523
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48171
Number of Sequences: 230285
Number of extensions: 48171
Number of successful extensions: 4237
Number of sequences better than 10.0: 45
length of query: 366
length of database: 241,976,893
effective HSP length: 18
effective length of query: 348
effective length of database: 237,831,763
effective search space: 82765453524
effective search space used: 82765453524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)