Search to UniGene2 database
Query= 20030531S-016958 (20030531S-016958) 20030531S-016958
(736 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S3619678 Homo sapiens MEGF10 protein (MEGF10), mRNA /... 220 7e-56
Alignment gnl|UG|Mm#S14814373 Mus musculus mRNA for mKIAA1781 protein /cd... 52 4e-05
Alignment gnl|UG|Mm#S10828667 Mus musculus RIKEN cDNA 2410080H04 gene (24... 52 4e-05
Alignment gnl|UG|Hs#S3619679 Homo sapiens MEGF11 protein (MEGF11), mRNA /... 40 0.14
Alignment gnl|UG|Hs#S1727312 Homo sapiens phosphodiesterase 1B, calmoduli... 40 0.14
Alignment gnl|UG|Mm#S10865554 Mus musculus 3 days neonate thymus cDNA, RI... 40 0.14
Alignment gnl|UG|Hs#S5979107 Homo sapiens, clone IMAGE:5260671, mRNA /gb=... 38 0.56
Alignment gnl|UG|Mm#S8762887 Mus musculus pecanex homolog (Drosophila) (P... 38 0.56
Alignment gnl|UG|Ssc#S6091719 Pig pancreas phospholipase A-2 (PLA-2) mRNA... 38 0.56
Alignment gnl|UG|Hs#S2928469 UI-H-BI4-apu-c-11-0-UI.s1 NCI_CGAP_Sub8 Homo... 36 2.2
>gnl|UG|Hs#S3619678 Homo sapiens MEGF10 protein (MEGF10), mRNA
/cds=(204,3626) /gb=NM_032446 /gi=14192942 /ug=Hs.287425
/len=7522
Length = 7522
Score = 220 bits (111), Expect = 7e-56
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 325 tcaggtgtccactgtgacagcgtgtgtgctgagggtcgctggggccccaactgctccctg 384
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1893 tcaggtgtccactgtgacagcgtgtgtgctgagggacgctggggccccaactgctccctg 1952
Query: 385 ccctgctactgtaaaaacggggcttcgtgctccccggatgacggcatctgtgagtgtgca 444
||||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||
Sbjct: 1953 ccctgctactgtaaaaatggggcttcatgctcccctgatgatggcatctgcgagtgtgca 2012
Query: 445 ccggggttccgaggcaccacctgtcag 471
|| || |||||||||||||| ||||||
Sbjct: 2013 ccaggcttccgaggcaccacttgtcag 2039
>gnl|UG|Mm#S14814373 Mus musculus mRNA for mKIAA1781 protein
/cds=(1,2766) /gb=AK122555 /gi=28972841 /ug=Mm.188996
/len=5278
Length = 5278
Score = 52.0 bits (26), Expect = 4e-05
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 358 ggtcgctggggccccaactgctccctgccctgctactgtaaaaacggggcttcgtgctcc 417
|||||||||||||||||||| || || ||||| |||| | ||||| | ||| ||||||
Sbjct: 1051 ggtcgctggggccccaactgttcagtgtcctgcagctgtgagaacggaggttcctgctcc 1110
Query: 418 ccggatgacggcatctgtgagtgtgc 443
||||| ||||| | ||| ||||||||
Sbjct: 1111 ccggaggacgggagctgcgagtgtgc 1136
>gnl|UG|Mm#S10828667 Mus musculus RIKEN cDNA 2410080H04 gene
(2410080H04Rik), mRNA /cds=(147,2990) /gb=NM_172522
/gi=27369721 /ug=Mm.127721 /len=3568
Length = 3568
Score = 52.0 bits (26), Expect = 4e-05
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 358 ggtcgctggggccccaactgctccctgccctgctactgtaaaaacggggcttcgtgctcc 417
|||||||||||||||||||| || || ||||| |||| | ||||| | ||| ||||||
Sbjct: 1755 ggtcgctggggccccaactgttcagtgtcctgcagctgtgagaacggaggttcctgctcc 1814
Query: 418 ccggatgacggcatctgtgagtgtgc 443
||||| ||||| | ||| ||||||||
Sbjct: 1815 ccggaggacgggagctgcgagtgtgc 1840
>gnl|UG|Hs#S3619679 Homo sapiens MEGF11 protein (MEGF11), mRNA
/cds=(160,3069) /gb=NM_032445 /gi=14192940 /ug=Hs.248367
/len=5702
Length = 5702
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 361 cgctggggccccaactgctc 380
||||||||||||||||||||
Sbjct: 1642 cgctggggccccaactgctc 1661
>gnl|UG|Hs#S1727312 Homo sapiens phosphodiesterase 1B,
calmodulin-dependent (PDE1B), mRNA /cds=(167,1777)
/gb=NM_000924 /gi=24431942 /ug=Hs.203238 /len=3236
Length = 3236
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 cttgggcttctcctctgctc 41
||||||||||||||||||||
Sbjct: 529 cttgggcttctcctctgctc 510
>gnl|UG|Mm#S10865554 Mus musculus 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630046L02
product:unknown EST, full insert sequence. /gb=AK041916
/gi=26088727 /ug=Mm.102779 /len=1795
Length = 1795
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 aatataacaaagaaatttta 84
||||||||||||||||||||
Sbjct: 1350 aatataacaaagaaatttta 1331
>gnl|UG|Hs#S5979107 Homo sapiens, clone IMAGE:5260671, mRNA
/gb=BC038114 /gi=23958662 /ug=Hs.281434 /len=5645
Length = 5645
Score = 38.2 bits (19), Expect = 0.56
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 371 ccaactgctccctgccctg 389
|||||||||||||||||||
Sbjct: 2445 ccaactgctccctgccctg 2427
>gnl|UG|Mm#S8762887 Mus musculus pecanex homolog (Drosophila) (Pcnx),
mRNA /cds=(867,5207) /gb=NM_018814 /gi=9055259
/ug=Mm.86584 /len=6169
Length = 6169
Score = 38.2 bits (19), Expect = 0.56
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 710 ccttcctgggcagcgccat 728
|||||||||||||||||||
Sbjct: 2689 ccttcctgggcagcgccat 2707
>gnl|UG|Ssc#S6091719 Pig pancreas phospholipase A-2 (PLA-2) mRNA,
complete cds, clone pig-1(pcDNA). /cds=(38,478)
/gb=M21055 /gi=164611 /ug=Ssc.16207 /len=509
Length = 509
Score = 38.2 bits (19), Expect = 0.56
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 708 tgccttcctgggcagcgcc 726
|||||||||||||||||||
Sbjct: 92 tgccttcctgggcagcgcc 74
>gnl|UG|Hs#S2928469 UI-H-BI4-apu-c-11-0-UI.s1 NCI_CGAP_Sub8 Homo
sapiens cDNA clone IMAGE:3088532 3', mRNA sequence
/clone=IMAGE:3088532 /clone_end=3' /gb=BF512006
/gi=11595304 /ug=Hs.439926 /len=1162
Length = 1162
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 420 ggatgacggcatctgtga 437
||||||||||||||||||
Sbjct: 279 ggatgacggcatctgtga 296
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138859
Number of Sequences: 230285
Number of extensions: 138859
Number of successful extensions: 20446
Number of sequences better than 10.0: 80
length of query: 736
length of database: 241,976,893
effective HSP length: 19
effective length of query: 717
effective length of database: 237,601,478
effective search space: 170360259726
effective search space used: 170360259726
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)