>20030826C-000127 (20030826C-000127) 20030826C-000127 ACTCACTCGA CACCGACGCC GCTGCCGCCG CAGGCCCCTC CACGCCCACA CCCCCTACCC ACTGCCCAGC CATGGAGGCC ATCAAGAAGA AGATGCAGAT GCTGAAGCTG GACAAGGAGA ACGCCATCGA CCGGGCCGAG CAGGCGGAGT CGGATAAGAA AGCTGCTGAG GAGAAGTGCA AGCAGGTGGA GGAGGAGCTG ACGCACCTCC AGAAGAAGCT GAAGGGGACA GAGGATGAGC TGGACAAATA CTCCGAGAAC CTGAAGGACG CGCAGGAAAA GCTGGAGTTG AGCGAGAAGA AAGCCTCCGA CGCCGAAGGG GATGTAGCAG CTCTCAATCG GCGCATCCAA CTCGTTGAGG AGGAGTTGGA CAGGGCTCAG GAACGACTGG CCACAGCCCT GCAGAAGCTT GAGGAGGCAG AAAAGGCTGC AGATGAGAGC GAGAGAGGAA TGAAGGTGAT AGAAAACCGG GCCATGAAAG ATGAGGAGAA GATGGAGATT CAGGAGATGC AGCTCAAAGA GGCCAAGCAC ATTGCCGAGG AGGCCGACCG CAAATACGAG GAGGTAGCTC GTAAGTTGGT CATCCTGGAG GGCGAGCTGG AGAGGGCAGA GGAGCGTGCC GAGGTGTCTG AACTAAAATG TGGTGACCTG GAAGAAGAAC TCAAGAATGT CACCAACAAC CTGAAGTCGC TAGAGGCTGC ATCTGAAAAG TATTCTGAAA AGGAGGATAA ATATGAAGAA GAGATTAAAC TTCTGTCTGA CAAACTGAAA GAGGCTGAGA CCCGTGCTGA ATTTGCAGAG AGAACAGTTG CAAAACTGGA AAAGACCATC GATGACCTGG AAGAAAAACT TGCCCAGGCC AAAGAAAAGA ACGTGGGCTT ACATCAAACA CTGGATCAGA CACTAAACGA ACTAAACTGT ATATAACCAA AACAGAAAAA GTCTCGTTCC ATCAAAAACT CCCAAGCTAC GTTGTTTTTC TCTTCTCTTG GTAGAAGTTT CTTTTGTTTT TTGCCCCCTA TGCTTTTGCC TGAAACTGGA AATGTCAGCA TTTATAGATA CGTGAACCCA ATATTTTTTT TGTTAAAAAA AAAAAACTTT TTTAAACCCC CCAAGTTTAA AAATTCTTTT TTTCCTTTTC CCTTTTTTTT TTTTCCAAGG GTGGGCCCCC CCCCCCCCTT TTTTTTTTCT CCCACCCCTT CTTTTTTTTT TTTTTT
Query= 20030826C-000127 (20030826C-000127) 20030826C-000127
(1216 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, comple... 1287 0.0
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 973 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clon... 658 0.0
Alignment gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4 (LOC157... 468 e-130
Alignment gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens... 293 1e-77
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA... 250 1e-64
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRN... 240 1e-61
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 236 2e-60
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRN... 224 8e-57
Alignment gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), mR... 188 4e-46
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 1287 bits (649), Expect = 0.0
Identities = 687/697 (98%), Gaps = 2/697 (0%)
Strand = Plus / Plus
Query: 312 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 192
Query: 372 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 252
Query: 432 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 312
Query: 492 atggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgc 372
Query: 552 aaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagag 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagag 432
Query: 612 gagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtc 492
Query: 672 accaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaa 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 accaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaa 552
Query: 732 tatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaa 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaa 612
Query: 792 tttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaactt 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaactt 672
Query: 852 gcccaggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaa 911
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 673 gcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaa 732
Query: 912 ctaaactgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacg 971
|||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 733 ctaaactgtatataaccaaaacag-aagagtctcgttccatcagaaactccagagctacg 791
Query: 972 ttgtttttctcttctcttggtagaagtttcttttgtt 1008
|||||||||||||||||| ||||||||||||||||
Sbjct: 792 -tgtttttctcttctcttgtaagaagtttcttttgtt 827
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 973 bits (491), Expect = 0.0
Identities = 646/695 (92%), Gaps = 2/695 (0%)
Strand = Plus / Plus
Query: 315 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 374
||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 186 gaaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggaggagttggacagg 245
Query: 375 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 434
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct: 246 gctcaggaacgactggccacggccctgcagaagctggaggaggcagaaaaagctgcagat 305
Query: 435 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 494
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 306 gagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatg 365
Query: 495 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 554
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 366 gagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaa 425
Query: 555 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 614
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 426 tacgaggaggtagctcgtaagctggtcatcctggagggtgagctggagagggcagaggag 485
Query: 615 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 674
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 486 cgtgcggaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgttact 545
Query: 675 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 734
||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 aacaatctgaaatctctggaggctgcatctgaaaagtattctgaaaaggaggacaaatat 605
Query: 735 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 794
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaagaagaaattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 665
Query: 795 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgcc 854
||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 666 gcagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgcc 725
Query: 855 caggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaacta 914
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 726 caggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaactt 785
Query: 915 aactgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacgt-t 973
|||||||||||| |||||||| || ||||| |||||| || |||||| |||| |||
Sbjct: 786 aactgtatataagcaaaacag-aagagtcttgttccaacagaaactctggagctccgtgg 844
Query: 974 gtttttctcttctcttggtagaagtttcttttgtt 1008
|| |||||||||||||| ||||||| ||||||||
Sbjct: 845 gtctttctcttctcttgtaagaagttccttttgtt 879
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 658 bits (332), Expect = 0.0
Identities = 542/612 (88%)
Strand = Plus / Plus
Query: 315 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 374
||||| |||| ||| |||||||| || ||||||||||| | |||||||| ||||| ||
Sbjct: 173 gaaggagatgcagccgctctcaaccgccgcatccaactgctggaggaggaactggaccgg 232
Query: 375 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 434
|||||||| | |||||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 233 gctcaggagcagctggccacagccctgcagaatctggaagaggcagagaaggctgctgat 292
Query: 435 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 494
||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 293 gagagtgagagaggcatgaaggtaatagagaaccgagccatgaaagatgaggaaaagatg 352
Query: 495 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 554
||||| | |||||||||||||||||| ||||||||||| | || || |||||||||||
Sbjct: 353 gagatcctggagatgcagctcaaagaagccaagcacatcactgatgaagccgaccgcaag 412
Query: 555 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 614
|| |||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct: 413 tatgaggaggttgctcgtaagttggtcatcctggagggtgagctgaaaagagcagaggag 472
Query: 615 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 674
|| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 473 cgggcggaggtatctgaactaaagtgtggtgacctggaagaagagctcaagaatgtaact 532
Query: 675 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 734
||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 aacaatctgaaatcactggaggctgcttctgaaaagtattctgaaaaggaggataaatat 592
Query: 735 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 794
|||||||| || || |||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 593 gaagaagaaatcaagcttctgtctgacaagctgaaggaggctgagacccgagctgagttt 652
Query: 795 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgcc 854
||||| || |||||| | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 653 gcagaaaggacagtttctaaactggagaagacaatcgatgacctggaagaaaaacttgcc 712
Query: 855 caggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaacta 914
|||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct: 713 caggccaaagaagagaatgtgggcttacatcagacactggaccagacactaaacgaactt 772
Query: 915 aactgtatataa 926
||||||||||||
Sbjct: 773 aactgtatataa 784
>gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4 (LOC157784),
mRNA /cds=(55,537) /gb=XM_088391 /gi=27479113
/ug=Hs.447786 /len=1385
Length = 1385
Score = 468 bits (236), Expect = e-130
Identities = 359/396 (90%), Gaps = 3/396 (0%)
Strand = Plus / Plus
Query: 614 gcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcac 673
|||||| |||||||| |||||||||||||||||| ||| | |||||||||||||||| ||
Sbjct: 468 gcgtgcggaggtgtccgaactaaaatgtggtgacgtggca-aagaactcaagaatgttac 526
Query: 674 caacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaata 733
||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 527 taacaatctgaaatcgctggaagctgcatctgaaaagtattctgaaaaggaggacaaata 586
Query: 734 tgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaatt 793
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 587 tgaagaagaaattaaacttctgtctgacaaagtgaaagaggctgagacccgtgctgaatt 646
Query: 794 tgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgc 853
|||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 647 tgcagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgc 706
Query: 854 ccaggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaact 913
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 707 ccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaact 766
Query: 914 aaactgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacgt- 972
|||||||||||| |||||||| || ||||| |||||| || ||||||| |||| |||
Sbjct: 767 taactgtatataagcaaaacag-aagagtcttgttccaacagaaactccggagctccgtc 825
Query: 973 tgtttttctcttctcttggtagaagtttcttttgtt 1008
|| ||||||||||||| ||||||| ||||||||
Sbjct: 826 ggtctttctcttctcttttaagaagttccttttgtt 861
Score = 442 bits (223), Expect = e-122
Identities = 271/287 (94%)
Strand = Plus / Plus
Query: 333 ctcaatcggcgcatccaactcgttgaggaggagttggacagggctcaggaacgactggcc 392
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ctcaaccgacgcatccagctcgttgaggaggagttggacagggctcaggaacgactggcc 234
Query: 393 acagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatg 452
||||||||||||||||| |||||||||||||| | |||||||||||| || |||||||||
Sbjct: 235 acagccctgcagaagctggaggaggcagaaaaagttgcagatgagagtgaaagaggaatg 294
Query: 453 aaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcag 512
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 295 aaggtgatagaaaaccgggccatgaaggatgaggagaagatggagattcaggagatgcag 354
Query: 513 ctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgt 572
||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||||
Sbjct: 355 ctcaaagaggccaagcacattgcggaaaaggctgaccgcaaatacgagaaggtagctcgt 414
Query: 573 aagttggtcatcctggagggcgagctggagagggcagaggagcgtgc 619
||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 415 aagctggtcatcctggagggtgagctggagagggcagaggagcgtgc 461
>gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens
cDNA, mRNA sequence /gb=BE770853 /gi=10224511
/ug=Hs.478600 /len=396
Length = 396
Score = 293 bits (148), Expect = 1e-77
Identities = 169/176 (96%)
Strand = Plus / Minus
Query: 426 gctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgag 485
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 182 gctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgag 123
Query: 486 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggcc 545
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 122 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggct 63
Query: 546 gaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctgga 601
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 62 gaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctgga 7
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 250 bits (126), Expect = 1e-64
Identities = 351/426 (82%)
Strand = Plus / Plus
Query: 177 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 236
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 237 gagctggacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcgag 296
||| |||| || || |||||| | ||||||| || ||||| || |||||| | |||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 297 aagaaagcctccgacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgtt 356
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 357 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 416
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 417 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 476
|| || || || || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 380 gctgagaaagccgcggatgagagcgagagaggaatgaaggtcattgaaaaccgggccatg 439
Query: 477 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 536
|| |||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||
Sbjct: 440 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaagccaagcacatcgct 499
Query: 537 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 596
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 500 gaggactcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggggag 559
Query: 597 ctggag 602
||||||
Sbjct: 560 ctggag 565
Score = 117 bits (59), Expect = 1e-24
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 67 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 126
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 127 tcgaccgggccgagcaggc 145
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 723 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 782
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 783 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 842
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 843 ga 844
||
Sbjct: 806 ga 807
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(83,937) /gb=NM_024427 /gi=31560029 /ug=Mm.121878
/len=1703
Length = 1703
Score = 240 bits (121), Expect = 1e-61
Identities = 424/525 (80%)
Strand = Plus / Plus
Query: 342 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 401
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 402 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 461
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 413 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 472
Query: 462 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 521
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 473 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 532
Query: 522 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 581
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 533 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 592
Query: 582 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 641
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 593 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 652
Query: 642 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 701
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 653 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 712
Query: 702 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 761
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 713 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 772
Query: 762 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaa 821
|| ||||| |||||||| || || ||||| |||||||||||| |||| | ||| ||||
Sbjct: 773 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagtaaccaaattggag 832
Query: 822 aagaccatcgatgacctggaagaaaaacttgcccaggccaaagaa 866
|| | ||| |||||| | ||||| ||| | ||||| |||||||||
Sbjct: 833 aaaagcattgatgacttagaagagaaagtggcccatgccaaagaa 877
Score = 95.6 bits (48), Expect = 5e-18
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 70 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 129
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 130 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 189
| || || ||||| |||||| | |||||||| || || || || | |||||||| |||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaaggcggcggaagaccggagcaagcagctgg 200
Query: 190 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 249
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 201 aagatgagctggtgtcactgcaaaagaaactcaagggcactgaagatgaactggacaaat 260
Query: 250 actccgag 257
||||||||
Sbjct: 261 actccgag 268
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 236 bits (119), Expect = 2e-60
Identities = 410/507 (80%)
Strand = Plus / Plus
Query: 78 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 137
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 138 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 197
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 198 ctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaatactccgag 257
||| | || || |||||||| |||| || || ||||| ||||||||||| ||||||
Sbjct: 123 ctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatattccgag 182
Query: 258 aacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaagcctccgacgccgaa 317
|| || || || ||||| ||||||||| || ||||| || ||| |||| || |||
Sbjct: 183 gctctcaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgatgctgaa 242
Query: 318 ggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagggct 377
| |||||||| |||| || | ||||||||||| |||||||| ||| ||||| | ||
Sbjct: 243 gccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggaccgtgcc 302
Query: 378 caggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgag 437
||||| |||||||| ||||| | ||||| ||||||||||| || ||||| |||||||||
Sbjct: 303 caggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagcagatgag 362
Query: 438 agcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggag 497
|| |||||||| ||||| || || |||| ||| ||| || ||||||||||| |||||
Sbjct: 363 agtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaa 422
Query: 498 attcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatac 557
||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 423 attcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtat 482
Query: 558 gaggaggtagctcgtaagttggtcatc 584
|| ||||| || |||||| ||||||||
Sbjct: 483 gaagaggtggcccgtaagctggtcatc 509
Score = 54.0 bits (27), Expect = 2e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 720 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 779
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 780 acccgtgctgaatttgcagagag 802
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 224 bits (113), Expect = 8e-57
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 354 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 413
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 401 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 460
Query: 414 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 473
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 461 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 520
Query: 474 atgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacatt 533
||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct: 521 atgaaggatgaggagaagatggaactgcaggagatgcagctgaaggaggccaagcacatc 580
Query: 534 gccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggc 593
|| ||||| | ||||||||||| || ||||| || | ||| |||| |||||||| ||
Sbjct: 581 gctgaggattcagaccgcaaatatgaagaggtggccaggaagctggtgatcctggaagga 640
Query: 594 gagctggag 602
|||||||||
Sbjct: 641 gagctggag 649
Score = 174 bits (88), Expect = 7e-42
Identities = 154/176 (87%)
Strand = Plus / Plus
Query: 69 gccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 128
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 175
Query: 129 gaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtg 188
||||| ||||||||||| || | || ||||| |||||||| ||||||||| ||
Sbjct: 176 gaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagctg 235
Query: 189 gaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctgga 244
|||||||||| | | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 236 gaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtgga 291
Score = 54.0 bits (27), Expect = 2e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 726 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 785
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 773 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 832
Query: 786 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 844
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 833 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 891
>gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), mRNA
/cds=(151,1005) /gb=NM_000366 /gi=27597084 /ug=Hs.133892
/len=1265
Length = 1265
Score = 188 bits (95), Expect = 4e-46
Identities = 434/547 (79%)
Strand = Plus / Plus
Query: 70 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 129
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 149 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaggagaacgccttgg 208
Query: 130 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 189
| || || |||||||||||| | || ||||| || || || || | | |||||||| |||
Sbjct: 209 atcgagctgagcaggcggaggccgacaagaaggcggcggaagacaggagcaagcagctgg 268
Query: 190 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 249
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 269 aagatgagctggtgtcactgcaaaagaaactcaagggcaccgaagatgaactggacaaat 328
Query: 250 actccgagaacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaagcctccg 309
| || ||| || || || || ||||| ||||||||| || ||||| || ||| |||
Sbjct: 329 attctgaggctctcaaagatgcccaggagaagctggagctggcagagaaaaaggccaccg 388
Query: 310 acgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttgg 369
| || |||| || ||||| |||| || | |||||||| || |||||||| |||||||
Sbjct: 389 atgctgaagccgacgtagcttctctgaacagacgcatccagctggttgaggaagagttgg 448
Query: 370 acagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctg 429
| | || ||||| || ||||| ||||| |||||||||| ||||| || || ||||| |
Sbjct: 449 atcgtgcccaggagcgtctggcaacagctttgcagaagctggaggaagctgagaaggcag 508
Query: 430 cagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggaga 489
|||||||||| |||||||| ||||| || || || | || ||| |||||||| || |
Sbjct: 509 cagatgagagtgagagaggcatgaaagtcattgagagtcgagcccaaaaagatgaagaaa 568
Query: 490 agatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgacc 549
| ||||| ||||||||||| || || |||||||| ||||||||||| || || |||||||
Sbjct: 569 aaatggaaattcaggagatccaactgaaagaggcaaagcacattgctgaagatgccgacc 628
Query: 550 gcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcag 609
||||||| || ||||| || |||||| |||||||| | ||| |||| ||||| | ||||
Sbjct: 629 gcaaatatgaagaggtggcccgtaagctggtcatcattgagagcgacctggaacgtgcag 688
Query: 610 aggagcg 616
|||||||
Sbjct: 689 aggagcg 695
Score = 40.1 bits (20), Expect = 0.25
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 759 gacaaactgaaagaggctgagacccgtgctgaatttgcagagag 802
||||| ||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 838 gacaagctgaaggaggctgagactcgggctgagtttgcggagag 881
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 354,100
Number of Sequences: 249856
Number of extensions: 354100
Number of successful extensions: 40066
Number of sequences better than 10.0: 722
length of query: 1216
length of database: 258,717,139
effective HSP length: 19
effective length of query: 1197
effective length of database: 253,969,875
effective search space: 304001940375
effective search space used: 304001940375
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)