>20030826C-000128 (20030826C-000128) 20030826C-000128 TTTCTCCAAA TAAGTCCCGA AAAGGGGCAC TTTCCAGCAG CTGCGGCCAG CGGTGCCGAC GTCAGGCCCT CCCCCAGCGG TGCTGACGTC GACGGCCGGG CAGGGTGACC TCATCGCCCC GACGGCGGCC CTGCCGGGGG CGGGGAGAGG CAGGGGCGGC CCCCCGGCGT AGGAAAAGGC TCGGGGGCCG GGGCGCGGCT GCTGCAGCTC TTGCAAGAGC AGAGCCGAGC CGAGCGCCCG CCGCTGCCCG CCGCCCGCTG CGTGCGCCTC CGCGCCATGG CTGGCCTCAA CTCCCTGGAG GCGGTGAAAC GCAAGATCCA GGCCCTGCAG CAGCAGGCGG ACGAGGCAGA GGATCGCGCG CAGGGCCTGC AGCGGGAGCT GGACGGCGAG CGCGAGCGGC GGGAGAAAGC CGAAGGGGAT GTAGCAGCTC TCAATCGGCG CATCCAACTC GTTGAGGAGG AGTTGGACAG GGCTCAGGAA CGACTGGCCA CAGCCCTGCA GAAGCTTGAG GAGGCAGAAA AGGCTGCAGA TGAGAGCGAG AGAGGAATGA AGGTGATAGA AAACCGGGCC ATGAAAGATG AGGAGAAGAT GGAGATTCAG GAGATGCAGC TCAAAGAGGC CAAGCACATT GCCGAGGAGG CCGACCGCAA ATACGAGGAG GTAGCTCGTA AGTTGGTCAT CCTGGAGGGC GAGCTGGAGA GGGCAGAGGA GCGTGCCGAG GTGTCTGAAC TAAAATGTGG TGACCTGGAA GAAGAACTCA AGAATGTCAC CAACAACCTG AAGTCGCTAG AGGCTGCATC TGAAAAGTAT TCTGAAAAGG AGGATAAATA TGAAGAAGAG ATTAAACTTC TGTCTGACAA ACTGAAAGAG GCTGAGACCC GTGCTGAATT TGCAGAGAGA ACAGTTGCAA AACTGGAAAA GACCATCGAT GACCTGGAAG AAAAACTTGC CCAGGCCAAA GAAGAGAACG TGGGCTTACA TCAGACACTG GATCAGACAC TAAACGAACT AAACTGTATA TAACCAAAAC AGAAGAGTCT CGTTCCATCA GAAACTCCAG AGCTACGTGT TTTTCTCTTC TCTTGTAAGA AGTTTCTTTT GTTATTGCCT CTTTGCTTTG CTGGAAATGT CAAGCAAATT ATGAATACGT GACCAAATAT TTTGTATCAA AAAAGCTTTG AGCACCA
Query= 20030826C-000128 (20030826C-000128) 20030826C-000128
(1187 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, comple... 1683 0.0
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 1378 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clon... 846 0.0
Alignment gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4 (LOC157... 660 0.0
Alignment gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens... 293 1e-77
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRN... 244 8e-63
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRN... 224 8e-57
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA... 200 1e-49
Alignment gnl|UG|Bt#S12373623 IMU602702602.R1 CSEQFXL22 stomach-omasum Bos... 186 2e-45
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 172 3e-41
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 1683 bits (849), Expect = 0.0
Identities = 852/853 (99%)
Strand = Plus / Plus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 60
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 120
Query: 397 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 180
Query: 457 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 240
Query: 517 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 300
Query: 577 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 360
Query: 637 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 420
Query: 697 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 480
Query: 757 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 540
Query: 817 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 600
Query: 877 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 660
Query: 937 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 720
Query: 997 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 780
Query: 1057 ccagagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgc 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ccagagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgc 840
Query: 1117 tttgctggaaatg 1129
|||||||||||||
Sbjct: 841 tttgctggaaatg 853
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 1378 bits (695), Expect = 0.0
Identities = 861/914 (94%), Gaps = 3/914 (0%)
Strand = Plus / Plus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 397 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 456
||||| |||||||| ||||| ||||| || || ||||| || |||||||| |||||||||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtggccgccctcaaccgacgcatccagctcgttgag 230
Query: 457 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 516
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 231 gaggagttggacagggctcaggaacgactggccacggccctgcagaagctggaggaggca 290
Query: 517 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 576
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gaaaaagctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaag 350
Query: 577 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 351 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaa 410
Query: 637 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 696
||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 411 gaggctgaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctg 470
Query: 697 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 756
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagagggcagaggagcgtgcggaggtgtctgaactaaaatgtggtgacctggaagaagaa 530
Query: 757 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 816
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||||
Sbjct: 531 ctcaagaatgttactaacaatctgaaatctctggaggctgcatctgaaaagtattctgaa 590
Query: 817 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 876
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaggaggacaaatatgaagaagaaattaaacttctgtctgacaaactgaaagaggctgag 650
Query: 877 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 936
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 651 acccgtgctgaatttgcagagagaacggttgcaaaactggaaaagacaattgatgacctg 710
Query: 937 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 996
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaagagaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 770
Query: 997 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 1056
|||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 771 acactaaacgaacttaactgtatataagcaaaacagaagagtcttgttccaacagaaact 830
Query: 1057 ccagagctacgt--gtttttctcttctcttgtaagaagtttcttttgttattgcc-tctt 1113
| ||||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 831 ctggagctccgtgggtctttctcttctcttgtaagaagttccttttgttattgccatctt 890
Query: 1114 tgctttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcaaaaa 1173
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct: 891 cgctttgctggaaatgtcaagcaaattatgaatacatgaccaaatattttgtatcggaga 950
Query: 1174 agctttgagcacca 1187
||||||||||||||
Sbjct: 951 agctttgagcacca 964
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 846 bits (427), Expect = 0.0
Identities = 667/747 (89%)
Strand = Plus / Plus
Query: 277 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 336
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 337 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 396
|| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 397 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 456
||||| |||||||| ||||| |||| ||| |||||||| || ||||||||||| | |||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaactgctggag 217
Query: 457 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 516
||||| ||||| |||||||||| | |||||||||||||||||||| || || ||||||
Sbjct: 218 gaggaactggaccgggctcaggagcagctggccacagccctgcagaatctggaagaggca 277
Query: 517 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 576
|| |||||||| |||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 278 gagaaggctgctgatgagagtgagagaggcatgaaggtaatagagaaccgagccatgaaa 337
Query: 577 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 636
|||||||| ||||||||||| | |||||||||||||||||| ||||||||||| | ||
Sbjct: 338 gatgaggaaaagatggagatcctggagatgcagctcaaagaagccaagcacatcactgat 397
Query: 637 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 696
|| ||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 398 gaagccgaccgcaagtatgaggaggttgctcgtaagttggtcatcctggagggtgagctg 457
Query: 697 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 756
| || ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 458 aaaagagcagaggagcgggcggaggtatctgaactaaagtgtggtgacctggaagaagag 517
Query: 757 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 816
||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||||||
Sbjct: 518 ctcaagaatgtaactaacaatctgaaatcactggaggctgcttctgaaaagtattctgaa 577
Query: 817 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 876
||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||||
Sbjct: 578 aaggaggataaatatgaagaagaaatcaagcttctgtctgacaagctgaaggaggctgag 637
Query: 877 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 936
||||| ||||| |||||||| || |||||| | |||||||| ||||| ||||||||||||
Sbjct: 638 acccgagctgagtttgcagaaaggacagtttctaaactggagaagacaatcgatgacctg 697
Query: 937 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 996
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 698 gaagaaaaacttgcccaggccaaagaagagaatgtgggcttacatcagacactggaccag 757
Query: 997 acactaaacgaactaaactgtatataa 1023
|||||||||||||| ||||||||||||
Sbjct: 758 acactaaacgaacttaactgtatataa 784
Score = 60.0 bits (30), Expect = 3e-07
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 1118 ttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcaaaaaagct 1177
|||| ||||||| |||||| || |||||| | |||||||||||||||| | | | |||||
Sbjct: 886 ttgcaggaaatgccaagcagataatgaattcatgaccaaatattttgtgttagacaagct 945
Query: 1178 ttgagcacca 1187
||||||||||
Sbjct: 946 ttgagcacca 955
>gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4 (LOC157784),
mRNA /cds=(55,537) /gb=XM_088391 /gi=27479113
/ug=Hs.447786 /len=1385
Length = 1385
Score = 660 bits (333), Expect = 0.0
Identities = 446/480 (92%), Gaps = 4/480 (0%)
Strand = Plus / Plus
Query: 711 gcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcac 770
|||||| |||||||| |||||||||||||||||| ||| | |||||||||||||||| ||
Sbjct: 468 gcgtgcggaggtgtccgaactaaaatgtggtgacgtggca-aagaactcaagaatgttac 526
Query: 771 caacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaata 830
||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 527 taacaatctgaaatcgctggaagctgcatctgaaaagtattctgaaaaggaggacaaata 586
Query: 831 tgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaatt 890
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 587 tgaagaagaaattaaacttctgtctgacaaagtgaaagaggctgagacccgtgctgaatt 646
Query: 891 tgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgc 950
|||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 647 tgcagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgc 706
Query: 951 ccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaact 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaact 766
Query: 1011 aaactgtatataaccaaaacagaagagtctcgttccatcagaaactccagagctacgt-- 1068
|||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |||
Sbjct: 767 taactgtatataagcaaaacagaagagtcttgttccaacagaaactccggagctccgtcg 826
Query: 1069 gtttttctcttctcttgtaagaagtttcttttgttattgcc-tctttgctttgctggaaa 1127
|| ||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 827 gtctttctcttctcttttaagaagttccttttgttattgccatcttagctttgctggaaa 886
Query: 1128 tgtcaagcaaattatgaatacgtgaccaaatattttgtatcaaaaaagctttgagcacca 1187
||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 887 tgtcaagcaaattatgaatacatgaccaaatattttgtatcgaagaagctttgagcacca 946
Score = 583 bits (294), Expect = e-165
Identities = 400/433 (92%), Gaps = 3/433 (0%)
Strand = Plus / Plus
Query: 285 cctcaactccctggaggcggtgaaacgcaagatccaggccc-tgcagcagcaggcggacg 343
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct: 31 cctcaactccctggaggcggtgaaatgcaagatccaggcccctgcagtagcaggcggacg 90
Query: 344 aggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgagcggcggg 403
|||| || || ||||| |||||||||||||||||||||||||| |||||||| |||| |
Sbjct: 91 aggcggaagaccgcgc--agggcctgcagcgggagctggacggcaagcgcgagtggcgcg 148
Query: 404 agaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagt 463
||||||| ||||| ||||| || | ||||| || |||||||| ||||||||||||||||
Sbjct: 149 agaaagctgaaggtgatgtggccaccctcaaccgacgcatccagctcgttgaggaggagt 208
Query: 464 tggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaagg 523
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 209 tggacagggctcaggaacgactggccacagccctgcagaagctggaggaggcagaaaaag 268
Query: 524 ctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgagg 583
|||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 269 ttgcagatgagagtgaaagaggaatgaaggtgatagaaaaccgggccatgaaggatgagg 328
Query: 584 agaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccg 643
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 329 agaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaaaaggctg 388
Query: 644 accgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagaggg 703
|||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 389 accgcaaatacgagaaggtagctcgtaagctggtcatcctggagggtgagctggagaggg 448
Query: 704 cagaggagcgtgc 716
|||||||||||||
Sbjct: 449 cagaggagcgtgc 461
>gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens
cDNA, mRNA sequence /gb=BE770853 /gi=10224511
/ug=Hs.478600 /len=396
Length = 396
Score = 293 bits (148), Expect = 1e-77
Identities = 169/176 (96%)
Strand = Plus / Minus
Query: 523 gctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgag 582
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 182 gctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgag 123
Query: 583 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggcc 642
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 122 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggct 63
Query: 643 gaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctgga 698
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 62 gaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctgga 7
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(83,937) /gb=NM_024427 /gi=31560029 /ug=Mm.121878
/len=1703
Length = 1703
Score = 244 bits (123), Expect = 8e-63
Identities = 426/527 (80%)
Strand = Plus / Plus
Query: 439 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 498
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 499 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 558
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 413 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 472
Query: 559 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 618
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 473 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 532
Query: 619 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 678
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 533 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 592
Query: 679 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 738
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 593 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 652
Query: 739 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 798
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 653 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 712
Query: 799 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 858
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 713 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 772
Query: 859 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaa 918
|| ||||| |||||||| || || ||||| |||||||||||| |||| | ||| ||||
Sbjct: 773 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagtaaccaaattggag 832
Query: 919 aagaccatcgatgacctggaagaaaaacttgcccaggccaaagaaga 965
|| | ||| |||||| | ||||| ||| | ||||| |||||||||||
Sbjct: 833 aaaagcattgatgacttagaagagaaagtggcccatgccaaagaaga 879
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 224 bits (113), Expect = 8e-57
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 451 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 510
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 401 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 460
Query: 511 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 570
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 461 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 520
Query: 571 atgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacatt 630
||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct: 521 atgaaggatgaggagaagatggaactgcaggagatgcagctgaaggaggccaagcacatc 580
Query: 631 gccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggc 690
|| ||||| | ||||||||||| || ||||| || | ||| |||| |||||||| ||
Sbjct: 581 gctgaggattcagaccgcaaatatgaagaggtggccaggaagctggtgatcctggaagga 640
Query: 691 gagctggag 699
|||||||||
Sbjct: 641 gagctggag 649
Score = 54.0 bits (27), Expect = 2e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 823 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 882
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 773 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 832
Query: 883 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 941
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 833 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 891
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 200 bits (101), Expect = 1e-49
Identities = 221/261 (84%)
Strand = Plus / Plus
Query: 439 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 498
||||| || ||||| |||||||||||||| |||| ||||| || ||||| |||||| ||
Sbjct: 305 cgcattcagctcgtagaggaggagttggatcgggcacaggagcgcctggctacagccttg 364
Query: 499 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 558
|| ||||| |||||||| || || || || |||||||||||||||||||||||||| ||
Sbjct: 365 caaaagctggaggaggctgagaaagccgcggatgagagcgagagaggaatgaaggtcatt 424
Query: 559 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 618
||||||||||||||||| |||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 425 gaaaaccgggccatgaaggatgaggaaaagatggagctgcaggagatgcagctgaaggaa 484
Query: 619 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 678
||||||||||| || ||||| | ||||||||||| |||||||| || | ||| ||||
Sbjct: 485 gccaagcacatcgctgaggactcagaccgcaaatatgaggaggtggccaggaagctggtg 544
Query: 679 atcctggagggcgagctggag 699
|||||||| || |||||||||
Sbjct: 545 atcctggaaggggagctggag 565
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 820 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 879
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 880 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 939
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 940 ga 941
||
Sbjct: 806 ga 807
>gnl|UG|Bt#S12373623 IMU602702602.R1 CSEQFXL22 stomach-omasum Bos
taurus cDNA, mRNA sequence /gb=CB168959 /gi=28155085
/ug=Bt.6442 /len=792
Length = 792
Score = 186 bits (94), Expect = 2e-45
Identities = 229/274 (83%)
Strand = Plus / Minus
Query: 440 gcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgc 499
||||||| || |||||||| |||||||| | || ||||| || ||||| ||||| ||||
Sbjct: 786 gcatccagctggttgaggaagagttggatcgtgcccaggagcgtctggcaacagctctgc 727
Query: 500 agaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatag 559
||||||| |||||||| || ||||| ||||||||||| |||||||| ||||| || || |
Sbjct: 726 agaagctggaggaggccgagaaggcagcagatgagagtgagagaggcatgaaagtcattg 667
Query: 560 aaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagagg 619
| | ||| ||| || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 666 agagccgagcccaaaaggatgaggagaagatggagattcaggagatccagctgaaagagg 607
Query: 620 ccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtca 679
|||||||||| || ||||| ||||||||||| || || ||||| || |||||| ||||||
Sbjct: 606 ccaagcacatcgctgaggatgccgaccgcaagtatgaagaggtggcccgtaagctggtca 547
Query: 680 tcctggagggcgagctggagagggcagaggagcg 713
|| | ||| | || |||||| | |||||||||||
Sbjct: 546 tcattgagagtgacctggagcgtgcagaggagcg 513
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 172 bits (87), Expect = 3e-41
Identities = 204/243 (83%)
Strand = Plus / Plus
Query: 439 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 498
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 267 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 326
Query: 499 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 558
||||| ||||||||||| || ||||| ||||||||||| |||||||| ||||| || ||
Sbjct: 327 cagaaacttgaggaggctgagaaggcagcagatgagagtgagagaggcatgaaagtcatt 386
Query: 559 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 618
|||| ||| ||| || ||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 387 gaaagccgagcccaaaaggatgaggagaaaatggaaattcaggagatccagctgaaagaa 446
Query: 619 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 678
|||||||||||||| ||||| ||||||||||| || || ||||| || |||||| |||||
Sbjct: 447 gccaagcacattgctgaggatgccgaccgcaagtatgaagaggtggcccgtaagctggtc 506
Query: 679 atc 681
|||
Sbjct: 507 atc 509
Score = 54.0 bits (27), Expect = 2e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 817 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 876
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 877 acccgtgctgaatttgcagagag 899
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 225,388
Number of Sequences: 249856
Number of extensions: 225388
Number of successful extensions: 19037
Number of sequences better than 10.0: 62
length of query: 1187
length of database: 258,717,139
effective HSP length: 19
effective length of query: 1168
effective length of database: 253,969,875
effective search space: 296636814000
effective search space used: 296636814000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)