>20030826C-000863 (20030826C-000863) 20030826C-000863 ACATAGGCCG TCTTCAGCCG CAGCATCGAG TCGGCCGTCT TCAGCCGCAG CATCGAGTCG GCCTTGTTGG CCTACTAGAA AAAAAACTCC CTCCTCCAGC TTGTCCTCCG GTCGCGTTGC CACCACAGCG GCCGCTGCCG GGCGCGGTTA CGGCGGGTCG GTTGGTGTGT CTTTCAGCGT CGATTTCTGT GCAGTTGAAC GCCTGCCATG GCTGATTTAG ATCCGTTCGG CGCCCCCGCC GGCCCCTCGC TGGGGAACGG AGTGGCCGGC GAGGAGGACC CGGCCGCGGC CTTCTTGGCG CAGCAGGAGA GCGAGATTGC TGGCATCGAG AACGACGAGG CCTTCGCCAT CCTGGACGGA GGCGCTCCTG GGCCCCAGCC GCACGGCGAG CCGCCGGGGG GTCCGGATGC CGTTGATGGA GTGATGAATG GCGAATACTA CCAGGAGAGT AATGGGCCGA CAGACAGTTA TGCAGCTATT TCACAAGTGG ATCGATTGCA GTCAGAGCCT GAAAGTATCC GTAAATGGAG AGAAGAGCAA ACGGAACGCT TGGAAGCCCT TGATGCCAAT TCTCGGAAGC AGGAAGCAGA GTGGAAAGAA AAAGCAATAA AGGAGCTGGA AGAGTGGTAT GCAAGGCAGG ACGAGCAGTT ACAAAAGACG AAAGCAAACA ACAGGGCAGC AGAAGAAGCC TTTGTAAATG ACATTGAAGA GTCGTCCCCA GGCACGGAGT GGGAACGGGT GGCCCGGCTG TGTGACTTTA ACCCCAAGTC CAGCAAGCAG GCCAAAGATG TCTCCCGCAT GCGTTCTGTC CTCATCTCCC TCAAGCAGGC CCCCCTGGTG CACTGAAGAG CCACCATGTG GAAACACTAC ATCTGCAATA TCTTAATCCT ACTCAGTGAA GCTCTTCACA GTAATTGGAT TAATTATGTT GAGTTCTTTT GGACCAAACC TTTTTGTCTT TAGAGTTGAT CATTGTTTGT GATTGCATGT TTCCCTTCAA CTGTGTTCTC CCTGGCATTT CAAAAAAGAA ACGGAAGCGC CCCCAGGGAA AGGGGAGGGG AGGCCCTCCC AAAGGGGCAC CCCCCAACCC TCTGGCTTTT TGTGCCTTTT ATTCCCGAAA AAAAAAATTT TTCTGTGTTT AAAAACCTTT TAAAAAAAAA AAAAAAAAAA A
Query= 20030826C-000863 (20030826C-000863) 20030826C-000863
(1171 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6082470 MI-P-CP1-nzd-p-12-0-UI.s1 MI-P-CP1 Sus scrof... 1029 0.0
Alignment gnl|UG|Bt#S12072659 Bos taurus clathrin, light polypeptide (Lca)... 670 0.0
Alignment gnl|UG|Hs#S1731806 Homo sapiens clathrin, light polypeptide (Lca... 628 e-178
Alignment gnl|UG|Mm#S8539415 Mus musculus clathrin, light polypeptide (Lca... 496 e-138
Alignment gnl|UG|Bt#S11939874 191335 MARC 4BOV Bos taurus cDNA 5', mRNA se... 240 1e-61
Alignment gnl|UG|Hs#S1731808 Homo sapiens clathrin, light polypeptide (Lcb... 96 5e-18
Alignment gnl|UG|Mm#S9134521 602889953F1 NCI_CGAP_Lu29 Mus musculus cDNA c... 96 5e-18
Alignment gnl|UG|Bt#S12073066 Bos taurus clathrin, light polypeptide B (li... 86 5e-15
Alignment gnl|UG|Mm#S15645456 Mus musculus clathrin, light polypeptide (Lc... 82 7e-14
Alignment gnl|UG|Ssc#S6057563 MI-P-H3-adk-g-03-1-UM.s1 MI-P-H3 Sus scrofa ... 66 4e-09
>gnl|UG|Ssc#S6082470 MI-P-CP1-nzd-p-12-0-UI.s1 MI-P-CP1 Sus scrofa
cDNA clone MI-P-CP1-nzd-p-12-0-UI 3', mRNA sequence
/clone=MI-P-CP1-nzd-p-12-0-UI /clone_end=3' /gb=BQ605154
/gi=21551880 /ug=Ssc.11113 /len=661
Length = 661
Score = 1029 bits (519), Expect = 0.0
Identities = 529/531 (99%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 489 ggatcgattgcagtcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggatcgattgcagtcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacg 593
Query: 549 cttggaagcccttgatgccaattctcggaagcaggaagcagagtggaaagaaaaagcaat 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttggaagcccttgatgccaattctcggaagcaggaagcagagtggaaagaaaaagcaat 533
Query: 609 aaaggagctggaagagtggtatgcaaggcaggacgagcagttacaaaagacgaaagcaaa 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaaggagctggaagagtggtatgcaaggcaggacgagcagttacaaaagacgaaagcaaa 473
Query: 669 caacagggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacgga 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caacagggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacgga 413
Query: 729 gtgggaacgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaaga 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtgggaacgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaaga 353
Query: 789 tgtctcccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaag 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgtctcccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaag 293
Query: 849 agccaccatgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttca 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agccaccatgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttca 233
Query: 909 cagtaattggattaattatgttgagttcttttggaccaaacctttttgtctttagagttg 968
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 232 cagtaattggattaattatgttgagttcttttggaccaaacctttttgtttttagagttg 173
Query: 969 atcattgtttgtgattgcatgtttcccttcaactgtgttctccctggcatt 1019
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 172 atcattgtttgtgattgcatgttt-ccttcaactgtgttctccctggcatt 123
>gnl|UG|Bt#S12072659 Bos taurus clathrin, light polypeptide (Lca)
(CLTA), mRNA /cds=(103,834) /gb=NM_174022 /gi=31343020
/ug=Bt.1617 /len=1110
Length = 1110
Score = 670 bits (338), Expect = 0.0
Identities = 451/488 (92%), Gaps = 3/488 (0%)
Strand = Plus / Plus
Query: 205 gccatggctgatttagatccgttcggcgcccccgccggc---ccctcgctggggaacgga 261
||||||||||| |||||||||||||||| |||||| ||| ||| | ||||||||||||
Sbjct: 100 gccatggctgagttagatccgttcggcgtccccgctggcggtcccgccctggggaacgga 159
Query: 262 gtggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgct 321
||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gtggccggcgaagaggatcctgccgcggccttcttggcgcagcaggagagcgagattgcg 219
Query: 322 ggcatcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccg 381
||||| |||||||||||||||||||||||||||||||| ||||| || || |||||||
Sbjct: 220 ggcatagagaacgacgaggccttcgccatcctggacggcggcgcccccggatcccagcct 279
Query: 382 cacggcgagccgccggggggtccggatgccgttgatggagtgatgaatggcgaatactac 441
|||||||||||||||||| ||| ||||| ||||||||||||| |||||| || ||||||
Sbjct: 280 cacggcgagccgccggggattccagatgctgttgatggagtgacgaatggagactactac 339
Query: 442 caggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcag 399
Query: 502 tcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagccctt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagccctt 459
Query: 562 gatgccaattctcggaagcaggaagcagagtggaaagaaaaagcaataaaggagctggaa 621
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 460 gatgccaattctcggaagcaggaagcggagtggaaagaaaaagcaataaaggagctggac 519
Query: 622 gagtggtatgcaaggcaggacgagcagttacaaaagacgaaagcaaacaacagggcagca 681
||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||| |||
Sbjct: 520 gagtggtatgcgaggcaggatgagcagctacagaagacaaaagccaacaacagggtggca 579
Query: 682 gaagaagc 689
|| |||||
Sbjct: 580 gatgaagc 587
Score = 613 bits (309), Expect = e-174
Identities = 338/345 (97%), Gaps = 2/345 (0%)
Strand = Plus / Plus
Query: 675 ggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacggagtggga 734
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 663 ggcagcagaagaagcctttgtaaatgacattgaggagtcgtccccaggcactgagtggga 722
Query: 735 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 782
Query: 795 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccac 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 783 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccgc 842
Query: 855 catgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaa 914
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 843 cctgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacggtaa 902
Query: 915 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcatt 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 903 ttggattaattatgttgagttcttttggaccaaacc-ttttgtctttagagttgatcatt 961
Query: 975 gtttgtgattgcatgtttcccttcaactgtgttctccctggcatt 1019
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 962 gtttgtgattgcatgttt-ccttcaactgtgttctccctggcatt 1005
>gnl|UG|Hs#S1731806 Homo sapiens clathrin, light polypeptide (Lca)
(CLTA), transcript variant brain-specific, mRNA
/cds=(75,821) /gb=NM_007096 /gi=6005992 /ug=Hs.207052
/len=1105
Length = 1105
Score = 628 bits (317), Expect = e-178
Identities = 430/468 (91%), Gaps = 6/468 (1%)
Strand = Plus / Plus
Query: 228 cggcgcccccgccggcccctcgctggggaacggagtggccggcg------aggaggaccc 281
||||||||| | ||| ||| |||||||||||||||||||||||| | || |||||
Sbjct: 107 cggcgcccctggcggtcccgcgctggggaacggagtggccggcgccggcgaagaagaccc 166
Query: 282 ggccgcggccttcttggcgcagcaggagagcgagattgctggcatcgagaacgacgaggc 341
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 167 ggctgcggccttcttggcgcagcaagagagcgagattgcgggcatcgagaacgacgaggc 226
Query: 342 cttcgccatcctggacggaggcgctcctgggccccagccgcacggcgagccgccgggggg 401
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 227 cttcgccatcctggacggcggcgcccccgggccccagccgcacggcgagccgccgggggg 286
Query: 402 tccggatgccgttgatggagtgatgaatggcgaatactaccaggagagtaatgggccgac 461
||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||
Sbjct: 287 tccggatgctgttgatggagtaatgaatggtgaatactaccaggaaagtaatggtccaac 346
Query: 462 agacagttatgcagctatttcacaagtggatcgattgcagtcagagcctgaaagtatccg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agacagttatgcagctatttcacaagtggatcgattgcagtcagagcctgaaagtatccg 406
Query: 522 taaatggagagaagagcaaacggaacgcttggaagcccttgatgccaattctcggaagca 581
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 407 taaatggagagaagaacaaatggaacgcttggaagcccttgatgccaattctcggaagca 466
Query: 582 ggaagcagagtggaaagaaaaagcaataaaggagctggaagagtggtatgcaaggcagga 641
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 467 agaagcagagtggaaagaaaaggcaataaaggagctagaagaatggtatgcaagacagga 526
Query: 642 cgagcagttacaaaagacgaaagcaaacaacagggcagcagaagaagc 689
||||||| |||| || || |||||||||||||||| ||||| |||||
Sbjct: 527 cgagcagctacagaaaacaaaagcaaacaacagggtggcagatgaagc 574
Score = 591 bits (298), Expect = e-167
Identities = 336/348 (96%), Gaps = 3/348 (0%)
Strand = Plus / Plus
Query: 675 ggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacggagtggga 734
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 650 ggcagcagaagaagcctttgtaaatgacattgacgagtcgtccccaggcactgagtggga 709
Query: 735 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 794
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 710 acgggtggcccggctgtgtgactttaaccccaagtctagcaagcaggccaaagatgtctc 769
Query: 795 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccac 854
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 770 ccgcatgcgctcagtcctcatctccctcaagcaggccccgctggtgcactgaagagccac 829
Query: 855 catgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaa 914
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 830 cctgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtca 889
Query: 915 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcatt 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 890 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgttcatt 949
Query: 975 gtttgtgattgcatgtttc---ccttcaactgtgttctccctggcatt 1019
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 950 gtttgtgattgcatgtttccttccttcaactgtgttctccctggcatt 997
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 205 gccatggctgatttagatccgttcggcgcccccgccggc 243
||||||||||| | ||||||||||||||||| ||||||
Sbjct: 72 gccatggctgagctggatccgttcggcgcccctgccggc 110
>gnl|UG|Mm#S8539415 Mus musculus clathrin, light polypeptide (Lca)
(Clta), mRNA /cds=(109,816) /gb=NM_016760 /gi=7949022
/ug=Mm.198817 /len=1089
Length = 1089
Score = 496 bits (250), Expect = e-138
Identities = 383/425 (90%), Gaps = 3/425 (0%)
Strand = Plus / Plus
Query: 265 gccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggc 324
|||||||| || |||||||||||||||||||||||||| | ||||| |||||||| |||
Sbjct: 184 gccggcgaagaagacccggccgcggccttcttggcgcacgaagagagtgagattgcgggc 243
Query: 325 atcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccgcac 384
||||||||||| ||||||||||||||||||||||| ||||| || || || |||| |||
Sbjct: 244 atcgagaacgatgaggccttcgccatcctggacggcggcgccccggg--ccgagccacac 301
Query: 385 ggcgagccgccggggggtccggatgccgttgatggagtgatgaatggcgaatactaccag 444
||||||||| ||| || ||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 302 ggcgagccggcggagg-tccggatgctgttgacggagtgatgaatggtgaatactaccag 360
Query: 445 gagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagtca 504
||||| ||||| || ||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct: 361 gagagcaatggtccaacagacagttacgcagccatttcagaagtggatcgattgcagtca 420
Query: 505 gagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttgat 564
|||||||||||||||||||| |||||||||||||| || || ||| |||||||||| |||
Sbjct: 421 gagcctgaaagtatccgtaagtggagagaagagcagacagagcgcctggaagccctcgat 480
Query: 565 gccaattctcggaagcaggaagcagagtggaaagaaaaagcaataaaggagctggaagag 624
||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 481 gccaattctcggaagcaagaagcggagtggaaagaaaaggcgataaaggagctggaagag 540
Query: 625 tggtatgcaaggcaggacgagcagttacaaaagacgaaagcaaacaacagggcagcagaa 684
|||||||| ||||||||||||||| |||| ||||| || |||||||||||||||||||||
Sbjct: 541 tggtatgcgaggcaggacgagcagctacagaagacaaaggcaaacaacagggcagcagaa 600
Query: 685 gaagc 689
|||||
Sbjct: 601 gaagc 605
Score = 486 bits (245), Expect = e-135
Identities = 323/345 (93%), Gaps = 3/345 (0%)
Strand = Plus / Plus
Query: 675 ggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacggagtggga 734
|||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct: 645 ggcagcagaagaagcctttgtaaacgacattgacgagtcatccccaggcactgagtggga 704
Query: 735 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 794
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 705 gcgggtggcccccttgtgtgactttaaccccaagtccagcaaacaggccaaagatgtctc 764
Query: 795 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccac 854
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 765 tcgcatgcgctcagtcctcatctccctgaagcaggcccccctggtgcactgaagagccac 824
Query: 855 catgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaa 914
| ||| |||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct: 825 cctgttgaaacactacgtctacaatatcttaatcctactcagtgaagctgttcac-gtaa 883
Query: 915 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcatt 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 884 ttggattaattatgttgagttcttttggaccaaacc-ttttgtctttagagttgatcatt 942
Query: 975 gtttgtgattgcatgtttcccttcaactgtgttctccctggcatt 1019
||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 943 gtttgtgattgaatgttt-ccttcaactgtgttctccctggcatt 986
>gnl|UG|Bt#S11939874 191335 MARC 4BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=BE722912 /gi=10124208
/ug=Bt.8983 /len=387
Length = 387
Score = 240 bits (121), Expect = 1e-61
Identities = 235/269 (87%), Gaps = 3/269 (1%)
Strand = Plus / Minus
Query: 761 accccaagtccagcaagcaggccaaagatgtctcccgcatgcgttctgtcctcatctccc 820
|||||||||||||||||||||||||| |||| ||||||| | ||| |||||| || ||||
Sbjct: 384 accccaagtccagcaagcaggccaaaaatgtttcccgcaagggttttgtccttatttccc 325
Query: 821 tcaagcaggcccccctggtgcactgaagagccaccatgtggaaacactacatctgcaata 880
|||||||||||||||||||||| | || | || || ||||| ||| |||||| ||||| |
Sbjct: 324 tcaagcaggcccccctggtgcaattaaaaacccccctgtgggaaccctacatttgcaaaa 265
Query: 881 tcttaatcctactcagtgaagctcttcacagtaattggattaattatgttgagttctttt 940
| ||||||||||||||||||||| ||| | | ||||||||||||||||||||||| ||||
Sbjct: 264 ttttaatcctactcagtgaagcttttcccgggaattggattaattatgttgagttttttt 205
Query: 941 ggaccaaacctttttgtctttagagttgatcattgtttgtgattgcatgtttcccttcaa 1000
|| || |||| |||||| |||| |||||||||||||||| ||||||| |||| |||||||
Sbjct: 204 gggcccaacc-ttttgtttttaaagttgatcattgtttgggattgcaagttt-ccttcaa 147
Query: 1001 ctgtgttctccctggcatttcaaaaaaga 1029
||||||| |||| |||| |||||||||||
Sbjct: 146 ctgtgttttccccggca-ttcaaaaaaga 119
>gnl|UG|Hs#S1731808 Homo sapiens clathrin, light polypeptide (Lcb)
(CLTB), transcript variant brain, mRNA /cds=(176,865)
/gb=NM_007097 /gi=32483394 /ug=Hs.380749 /len=1184
Length = 1184
Score = 95.6 bits (48), Expect = 5e-18
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 271 gaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcgag 330
|||||||||||||| || |||||| |||| |||||||||||||||||||| ||||| |||
Sbjct: 233 gaggaggacccggcggccgccttcctggcccagcaggagagcgagattgcaggcatagag 292
Query: 331 aacgacgaggccttcg 346
|||||||||| |||||
Sbjct: 293 aacgacgagggcttcg 308
>gnl|UG|Mm#S9134521 602889953F1 NCI_CGAP_Lu29 Mus musculus cDNA
clone IMAGE:5035117 5', mRNA sequence
/clone=IMAGE:5035117 /clone_end=5' /gb=BI104369
/gi=14555262 /ti=44270874 /ug=Mm.124738 /len=997
Length = 997
Score = 95.6 bits (48), Expect = 5e-18
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 427 aatggcgaatactaccaggagagtaa-tgggccgacagacagttatgcagctatttcaca 485
|||||||||||||||||| | ||||| |||||| ||| |||||||||| ||||| ||| |
Sbjct: 834 aatggcgaatactaccagaaaagtaaatgggccaacaaacagttatgcggctatctcaga 775
Query: 486 agtggatcgattgc-agtcagagcctgaaagtatccgtaaatggagagaagagcaaacgg 544
|| | || | ||| | |||||| ||| | |||||| ||||||||||||||||||||| |
Sbjct: 774 agcaggtctactgccaatcagagactgga-gtatccctaaatggagagaagagcaaacag 716
Query: 545 aacgcttggaagcccttgatgccaattctcgg 576
| | ||||||||||||||||||||| ||||||
Sbjct: 715 agcacttggaagcccttgatgccaagtctcgg 684
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 994 ccttcaactgtgttctccctggcatt 1019
|||||||||| |||||||||||||||
Sbjct: 323 ccttcaactgcgttctccctggcatt 298
Score = 42.1 bits (21), Expect = 0.061
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 952 ttttgtctttagagttgatcattgt 976
||||||||||||||||| |||||||
Sbjct: 360 ttttgtctttagagttggtcattgt 336
>gnl|UG|Bt#S12073066 Bos taurus clathrin, light polypeptide B (light
chain B) (CLTLB), mRNA /cds=(143,775) /gb=NM_174277
/gi=31342441 /ug=Bt.10 /len=1033
Length = 1033
Score = 85.7 bits (43), Expect = 5e-15
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 270 cgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcga 329
||||||||||||||| || ||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 199 cgaggaggacccggcggctgccttcttggcccagcaggagagtgagattgcgggcataga 258
Query: 330 gaacgacgagg 340
||| |||||||
Sbjct: 259 gaatgacgagg 269
Score = 73.8 bits (37), Expect = 2e-11
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 716 ccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagca 775
|||| ||||| |||||||| |||||||| |||||||||||| ||||||||| |||||
Sbjct: 645 ccccgggcacagagtgggagaaggtggcccagctgtgtgacttcaaccccaagagcagca 704
Query: 776 agcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcag 828
||||| |||||| || |||||| |||| || || ||||| ||||| ||||||
Sbjct: 705 agcagtgcaaagacgtgtcccgcctgcgctcggtgctcatgtccctgaagcag 757
>gnl|UG|Mm#S15645456 Mus musculus clathrin, light polypeptide (Lcb)
(Cltb), mRNA /cds=(10,645) /gb=NM_028870 /gi=30794163
/ug=Mm.36879 /len=1577
Length = 1577
Score = 81.8 bits (41), Expect = 7e-14
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 264 ggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctgg 323
||||| |||||||||||| || || |||||| |||| |||||||| ||||||||||||||
Sbjct: 60 ggccgccgaggaggacccagcggccgccttcctggcccagcaggaaagcgagattgctgg 119
Query: 324 catcgagaa 332
|||||||||
Sbjct: 120 catcgagaa 128
Score = 56.0 bits (28), Expect = 4e-06
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 716 ccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagca 775
|||| ||||| |||||||| ||| |||| |||||||||||| || |||||| |||||
Sbjct: 515 ccccgggcacagagtgggagaaggtagcccagctgtgtgacttcaatcccaagagcagca 574
Query: 776 agcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagca 827
||||| |||||||| |||||| |||| || || ||||| ||||| |||||
Sbjct: 575 agcagtgtaaagatgtgtcccgcctgcgctcggtgctcatgtccctgaagca 626
>gnl|UG|Ssc#S6057563 MI-P-H3-adk-g-03-1-UM.s1 MI-P-H3 Sus scrofa cDNA
clone MI-P-H3-adk-g-03-1-UM 3', mRNA sequence
/clone=MI-P-H3-adk-g-03-1-UM /clone_end=3' /gb=BF712693
/gi=12012168 /ug=Ssc.8306 /len=235
Length = 235
Score = 65.9 bits (33), Expect = 4e-09
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 967 tgatcattgtttgtgattgcatgtttcccttcaactgtgttctccctggcatt 1019
||||||||| |||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 176 tgatcattgcttgtgactgcatgtttccat-caactgtgttctccctggcatt 125
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 190,473
Number of Sequences: 249856
Number of extensions: 190473
Number of successful extensions: 16775
Number of sequences better than 10.0: 44
length of query: 1171
length of database: 258,717,139
effective HSP length: 19
effective length of query: 1152
effective length of database: 253,969,875
effective search space: 292573296000
effective search space used: 292573296000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)