>20030826C-001381 (20030826C-001381) 20030826C-001381 AGACGCTGTC CTCGCGGCGC CGCCGGCCGG CCGGAGCCTC CTCCACCGAG GGGACCCCGC AACCGCGGCG CCCGGGTGGC AGCGATCCCG CCACAGCCTC CCCGAGGGCC CGTCCGGAGC CGGGGCGGGG CGGGGCGCCC TCCGCAACCA CGTGTGCCCG CCTCGCAGCG CTGCGCGCCC GCCGCCTTTC CCGGGCTCGC CCGCGGCCCG GCCGGAGCGC CTCGCCGGAG GTTTGTCCCC GCTCGCTCGC CGTAGCGCGC GGCCCCGCGG AGCGCAGGGC GCGCGGCCGA CATGGGCGAG ACCATATCCC GGAGGCTCTG GTTCCAGGGG GACTGGGACG CGGAAATGGA GGAGCGGGCG TTCCCCAACC CTTTCCCGGA CTACGAGGCC GCGGCCGCCG TGCCGGCGGA GGAGCCGCCA TGTGCTCGCC CTGCGCTCAC CCCGGAGGAG CTCGGCCTCC CTTTCCACAG CGACGGGAAG ATCATTCATA ATTTCACAAG GCGGATCCAG AGCAAAATCA AAGATCTTCT ACAGCAGATG GAAGAAGGGC TGAAGACAGC TGATCCGCAC GATTGCTCTG CTTACACGGG TTGGACAGGC ATAGCCCTTT TGTACCTTCA GTTGTACCGG GTCACATGTG ACCAGAACTA TCTGCTCCGA TCCCTGGATT ACGTAAAAAG AACACTTCGG AATCTGAACG GCCGGAGGGT CACTTTCCTC TGTGGAGATG CCGGGCCCCT GGCCGTCGGA GCTGTGGTGT ATCACAAACT CAAAAGTGAT GGCGAGTCCC AGGAATGCAT CACAAAACTC CTGCAGCTCC AGAGAACCAT CGTCTGCCGC GACTCGGACC TTCCCGATGA GCTGCTTTTC GGCCGCGCGG GCTACCTGTA CGCCTTGCTC TATGTGAACA CGGAGATGGA TCCGGGCGCC GTGTGCGAAT CAGCCATCAA AGAGGTGGTC GATGCTATTA TTGTTTCGGG CAAGACTTTG TCAAAGGAAG AAAGGAAGGC CGAGCGCTGC CCCCTGTTGT ACCAGTGGCA CAGGAAGCAG TACGTCGGAG CCGCCCATGG CATGGCTGGG ATCTACTACA TGCTAATGCA GCCAGCAGCA AAAGTGGACC AAGAAACCTT GACAGAGATG GTGAAGCCTA GTATTGACTA CATGCGCCAC AAAAGGTTCC GATCCCGGAA CTACCCATCC TCGTTAAGCA ACGAGACAGA CCGCCTGGTA CACTGGTTGC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA CAAGGTGGTT AAGGAGGAGA AGTACCTG
Query= 20030826C-001381 (20030826C-001381) 20030826C-001381
(1308 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S2294018 Homo sapiens LanC lantibiotic synthetase comp... 785 0.0
Alignment gnl|UG|Mm#S9640500 Mus musculus RIKEN cDNA 1700003F10 gene (1700... 414 e-114
Alignment gnl|UG|Ssc#S16515522 813122 MARC 3PIG Sus scrofa cDNA 5', mRNA s... 240 1e-61
Alignment gnl|UG|Mm#S8042016 Mus musculus neurofibromatosis 2 (Nf2), mRNA ... 44 0.017
Alignment gnl|UG|Mm#S9099289 Mus musculus trans-acting transcription facto... 40 0.27
Alignment gnl|UG|Hs#S2651942 Homo sapiens cDNA FLJ13839 fis, clone THYRO10... 38 1.1
Alignment gnl|UG|Hs#S4531979 AGENCOURT_7896881 NIH_MGC_72 Homo sapiens cDN... 38 1.1
Alignment gnl|UG|Hs#S1729348 Homo sapiens ubiquitin-conjugating enzyme E2L... 38 1.1
Alignment gnl|UG|Hs#S2140171 Homo sapiens scotin (SCOTIN), mRNA /cds=(135,... 38 1.1
Alignment gnl|UG|Hs#S3619738 Homo sapiens TEA domain family member 3 (TEAD... 38 1.1
>gnl|UG|Hs#S2294018 Homo sapiens LanC lantibiotic synthetase component
C-like 2 (bacterial) (LANCL2), mRNA /cds=(187,1539)
/gb=NM_018697 /gi=19923550 /ug=Hs.134342 /len=3972
Length = 3972
Score = 785 bits (396), Expect = 0.0
Identities = 749/864 (86%), Gaps = 2/864 (0%)
Strand = Plus / Plus
Query: 443 cggaggagctcggcctccctttcca-cagcgacgggaagatcattcataatttcacaagg 501
|||| |||| |||||||||||| || ||| ||||||||||||||||||||||||| |||
Sbjct: 353 cggatgagcccggcctcccttttcatcag-gacgggaagatcattcataatttcataaga 411
Query: 502 cggatccagagcaaaatcaaagatcttctacagcagatggaagaagggctgaagacagct 561
|||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 412 cggatccagaccaaaattaaagatcttctgcagcaaatggaagaagggctgaagacggct 471
Query: 562 gatccgcacgattgctctgcttacacgggttggacaggcatagcccttttgtaccttcag 621
||||| || || ||||||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 472 gatccccatgactgctctgcttatactggctggacaggcatagcccttttgtacctgcag 531
Query: 622 ttgtaccgggtcacatgtgaccagaactatctgctccgatccctggattacgtaaaaaga 681
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 532 ttgtaccgggtcacatgtgaccaaacctacctgctccgatccctggattacgtaaaaaga 591
Query: 682 acacttcggaatctgaacggccggagggtcactttcctctgtggagatgccgggcccctg 741
||||||||||||||||| ||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct: 592 acacttcggaatctgaatggccgcagggtcaccttcctctgtggggatgctggccccctg 651
Query: 742 gccgtcggagctgtggtgtatcacaaactcaaaagtgatggcgagtcccaggaatgcatc 801
|| || ||||||||| | ||||||||||||| |||||| | |||||||||||||| ||
Sbjct: 652 gctgttggagctgtgatttatcacaaactcagaagtgactgtgagtcccaggaatgtgtc 711
Query: 802 acaaaactcctgcagctccagagaaccatcgtctgccgcgactcggaccttcccgatgag 861
|||||||| |||||||||||||| | | ||||||| || || |||||||| ||||||
Sbjct: 712 acaaaacttttgcagctccagagatcggttgtctgccaagaatcagaccttcctgatgag 771
Query: 862 ctgcttttcggccgcgcgggctacctgtacgccttgctctatgtgaacacggagatggat 921
||||||| || || || || || ||||| ||||| || || ||||||| ||||| | |
Sbjct: 772 ctgctttatggacgggcaggttatctgtatgccttactgtacctgaacacagagataggt 831
Query: 922 ccgggcgccgtgtgcgaatcagccatcaaagaggtggtcgatgctattattgtttcgggc 981
|| ||| ||||||| || ||||| || |||||||| ||| |||||||||||| |||||
Sbjct: 832 ccaggcaccgtgtgtgagtcagctattaaagaggtagtcaatgctattattgaatcgggt 891
Query: 982 aagactttgtcaaaggaagaaaggaaggccgagcgctgccccctgttgtaccagtggcac 1041
||||||||||||| ||||||||| || | ||||||||||| ||||||||||||||||||
Sbjct: 892 aagactttgtcaagggaagaaagaaaaacggagcgctgcccgctgttgtaccagtggcac 951
Query: 1042 aggaagcagtacgtcggagccgcccatggcatggctgggatctactacatgctaatgcag 1101
||||||||||||| ||||| ||||||||||||||||| || ||||| ||| ||||||||
Sbjct: 952 cggaagcagtacgttggagcagcccatggcatggctggaatttactatatgttaatgcag 1011
Query: 1102 ccagcagcaaaagtggaccaagaaaccttgacagagatggtgaagcctagtattgactac 1161
|| |||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct: 1012 ccggcagcaaaagtggaccaagaaaccttgacagaaatggtgaaacccagtattgattat 1071
Query: 1162 atgcgccacaaaaggttccgatcccggaactacccatcctcgttaagcaacgagacagac 1221
|||||||||||| |||||||| |||| |||||||| || |||||||| || ||||||
Sbjct: 1072 gtgcgccacaaaaaattccgatctgggaattacccatcatcattaagcaatgaaacagac 1131
Query: 1222 cgcctggtacactggttgcacggggcgcccggcgtcatccacacgctcatgcaggcgtac 1281
|| ||||| ||||||| ||||| || || || |||||||||| ||||||||||||||||
Sbjct: 1132 cggctggtgcactggtgccacggcgccccgggggtcatccacatgctcatgcaggcgtac 1191
Query: 1282 aaggtggttaaggaggagaagtac 1305
||||| |||||||||||||||||
Sbjct: 1192 aaggtctttaaggaggagaagtac 1215
Score = 69.9 bits (35), Expect = 3e-10
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 343 gaaatggaggagcgggcgttccccaaccctttcccggactacgaggccgcggccg 397
||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||
Sbjct: 238 gaaatggaggaacgggcgttcgtcaaccccttcccggactacgaggccgccgccg 292
Score = 42.1 bits (21), Expect = 0.068
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 227 ggaggtttgtccccgctcgctcgccgtagcgcg 259
|||||||||||||||| ||| ||||||| ||||
Sbjct: 148 ggaggtttgtccccgcccgcgcgccgtaccgcg 180
>gnl|UG|Mm#S9640500 Mus musculus RIKEN cDNA 1700003F10 gene
(1700003F10Rik), mRNA /cds=(425,1777) /gb=NM_133737
/gi=19526935 /ug=Mm.25888 /len=2520
Length = 2520
Score = 414 bits (209), Expect = e-114
Identities = 686/845 (81%)
Strand = Plus / Plus
Query: 454 ggcctccctttccacagcgacgggaagatcattcataatttcacaaggcggatccagagc 513
||||||||||||||| |||||||||| ||| || |||| || ||| ||||||| |
Sbjct: 602 ggcctccctttccaccctaacgggaagattgttcccaacttcataaagcgtatccagacc 661
Query: 514 aaaatcaaagatcttctacagcagatggaagaagggctgaagacagctgatccgcacgat 573
||||||||||||||||| ||||||||||| ||||| ||||||||||| || || || ||
Sbjct: 662 aaaatcaaagatcttctgcagcagatggaggaaggactgaagacagcggaccctcatgac 721
Query: 574 tgctctgcttacacgggttggacaggcatagcccttttgtaccttcagttgtaccgggtc 633
|||||||| || || ||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 722 tgctctgcatatactggttggacaggcatagcacttttgtacctgcagctgtaccgggtc 781
Query: 634 acatgtgaccagaactatctgctccgatccctggattacgtaaaaagaacacttcggaat 693
|| ||||||||| ||| ||||| ||||||||||||||||| || |||||||| || |||
Sbjct: 782 actggtgaccagacctacctgcttcgatccctggattacgtgaagagaacactccgaaat 841
Query: 694 ctgaacggccggagggtcactttcctctgtggagatgccgggcccctggccgtcggagct 753
||| || || || ||||||||||| ||||||||||| |||||||| || || ||||||
Sbjct: 842 ttgagtggtcgcagagtcactttcctttgtggagatgctgggccccttgctgtgggagct 901
Query: 754 gtggtgtatcacaaactcaaaagtgatggcgagtcccaggaatgcatcacaaaactcctg 813
||| | ||||| |||||||||||||| | |||||||||||||||||||||||||| ||
Sbjct: 902 gtgatatatcataaactcaaaagtgaatgtgagtcccaggaatgcatcacaaaacttcta 961
Query: 814 cagctccagagaaccatcgtctgccgcgactcggaccttcccgatgagctgcttttcggc 873
||| | || ||||| || ||||| | || || || ||||| ||||| ||||| | ||
Sbjct: 962 cagatgcatagaactattgtctgtcaagagtcagagcttcctgatgaactgctgtatgga 1021
Query: 874 cgcgcgggctacctgtacgccttgctctatgtgaacacggagatggatccgggcgccgtg 933
|| || || |||||||| ||||| || || ||||||| ||||| | || ||| | ||
Sbjct: 1022 cgagcaggatacctgtatgccttactgtacctgaacacagagattggccctggcactgtt 1081
Query: 934 tgcgaatcagccatcaaagaggtggtcgatgctattattgtttcgggcaagactttgtca 993
| || |||| || |||||||| ||| ||||||||||| ||||| |||| | | |||
Sbjct: 1082 ggtgagacagctattaaagaggtagtcagtgctattattgagtcgggaaagagtctatca 1141
Query: 994 aaggaagaaaggaaggccgagcgctgccccctgttgtaccagtggcacaggaagcagtac 1053
| |||||||||||| | ||||||||||||||| | || ||||||||||| || || ||
Sbjct: 1142 agggaagaaaggaaatctgagcgctgccccctgctctatcagtggcacagaaaacaatat 1201
Query: 1054 gtcggagccgcccatggcatggctgggatctactacatgctaatgcagccagcagcaaaa 1113
|| ||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 1202 gttggagcagcccatggtatggctggcatctactacatgctaatgcagccagaagcaaaa 1261
Query: 1114 gtggaccaagaaaccttgacagagatggtgaagcctagtattgactacatgcgccacaaa 1173
||||||||||||||||| || || |||||||| || || ||||| || ||||||| |||
Sbjct: 1262 gtggaccaagaaaccttaaccgaaatggtgaaacccagcattgattatgtgcgccataaa 1321
Query: 1174 aggttccgatcccggaactacccatcctcgttaagcaacgagacagaccgcctggtacac 1233
| |||||||| | || || ||||| || |||||||| || ||||| || |||| |||
Sbjct: 1322 aaattccgatctggaaattatccatcatcattaagcaatgaaacagatcgattggtccac 1381
Query: 1234 tggttgcacggggcgcccggcgtcatccacacgctcatgcaggcgtacaaggtggttaag 1293
|||| || || || || || ||||||||| |||| | ||||| ||| |||| |||||
Sbjct: 1382 tggtgccatggtgctccaggagtcatccacgtgctcttacaggcataccaggtttttaag 1441
Query: 1294 gagga 1298
|||||
Sbjct: 1442 gagga 1446
Score = 50.1 bits (25), Expect = 3e-04
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 340 gcggaaatggaggagcgggcgttccccaaccctttcccggactacgaggccgc 392
||||| |||||||||||| |||||||||| || ||||| ||||| || |||||
Sbjct: 470 gcggagatggaggagcggtcgttccccaatcccttcccagactatgaagccgc 522
>gnl|UG|Ssc#S16515522 813122 MARC 3PIG Sus scrofa cDNA 5', mRNA
sequence /clone_end=5' /gb=CF179038 /gi=33290814
/ug=Ssc.5603 /len=708
Length = 708
Score = 240 bits (121), Expect = 1e-61
Identities = 127/129 (98%)
Strand = Plus / Plus
Query: 1109 caaaagtggaccaagaaaccttgacagagatggtgaagcctagtattgactacatgcgcc 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaaagtggaccaagaaaccttgacagagatggtgaagcctagtattgactacatgcgcc 60
Query: 1169 acaaaaggttccgatcccggaactacccatcctcgttaagcaacgagacagaccgcctgg 1228
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacagaccgcctgg 120
Query: 1229 tacactggt 1237
|||||||||
Sbjct: 121 tacactggt 129
>gnl|UG|Mm#S8042016 Mus musculus neurofibromatosis 2 (Nf2), mRNA
/cds=(577,2367) /gb=NM_010898 /gi=31982774 /ug=Mm.1190
/len=2604
Length = 2604
Score = 44.1 bits (22), Expect = 0.017
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 gtccggagccggggcggggcggggcg 137
|||||||| |||||||||||||||||
Sbjct: 64 gtccggaggcggggcggggcggggcg 89
>gnl|UG|Mm#S9099289 Mus musculus trans-acting transcription factor 5
(Sp5), mRNA /cds=(344,1540) /gb=NM_022435 /gi=31981231
/ug=Mm.155690 /len=2097
Length = 2097
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 111 cgtccggagccggggcgggg 130
||||||||||||||||||||
Sbjct: 899 cgtccggagccggggcgggg 880
>gnl|UG|Hs#S2651942 Homo sapiens cDNA FLJ13839 fis, clone
THYRO1000777. /cds=(133,756) /gb=AK023901 /gi=10435977
/ug=Hs.465430 /len=1959
Length = 1959
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 418 ccatgtgctcgccctgcgc 436
|||||||||||||||||||
Sbjct: 409 ccatgtgctcgccctgcgc 391
>gnl|UG|Hs#S4531979 AGENCOURT_7896881 NIH_MGC_72 Homo sapiens cDNA
clone IMAGE:6159921 5', mRNA sequence
/clone=IMAGE:6159921 /clone_end=5' /gb=BQ432042
/gi=21171118 /ti=140630585 /ug=Hs.441710 /len=1582
Length = 1582
Score = 38.2 bits (19), Expect = 1.1
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1274 aggcgtacaaggtggttaaggag 1296
||||||| |||||||||||||||
Sbjct: 549 aggcgtaaaaggtggttaaggag 527
>gnl|UG|Hs#S1729348 Homo sapiens ubiquitin-conjugating enzyme E2L 6
(UBE2L6), mRNA /cds=(97,558) /gb=NM_004223 /gi=31543903
/ug=Hs.425777 /len=1307
Length = 1307
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 120 ccggggcggggcggggcgc 138
|||||||||||||||||||
Sbjct: 14 ccggggcggggcggggcgc 32
>gnl|UG|Hs#S2140171 Homo sapiens scotin (SCOTIN), mRNA
/cds=(135,857) /gb=NM_016479 /gi=21703709 /ug=Hs.414579
/len=2166
Length = 2166
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 119 gccggggcggggcggggcg 137
|||||||||||||||||||
Sbjct: 28 gccggggcggggcggggcg 46
>gnl|UG|Hs#S3619738 Homo sapiens TEA domain family member 3 (TEAD3),
mRNA /cds=(191,1498) /gb=NM_003214 /gi=14165253
/ug=Hs.203846 /len=2912
Length = 2912
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 203 gcggcccggccggagcgcc 221
|||||||||||||||||||
Sbjct: 105 gcggcccggccggagcgcc 123
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 177,728
Number of Sequences: 249856
Number of extensions: 177728
Number of successful extensions: 14413
Number of sequences better than 10.0: 46
length of query: 1308
length of database: 258,717,139
effective HSP length: 19
effective length of query: 1289
effective length of database: 253,969,875
effective search space: 327367168875
effective search space used: 327367168875
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)