Search to UniGene2 database
Query= 20030826C-001638 (20030826C-001638) 20030826C-001638
(904 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S1729352 Homo sapiens ubiquitin specific protease 11 (... 718 0.0
Alignment gnl|UG|Mm#S9732866 Mus musculus ubiquitin specific protease 11 (... 325 2e-87
Alignment gnl|UG|Mm#S8042549 Mus musculus ubiquitin specific protease 4 (p... 56 3e-06
Alignment gnl|UG|Hs#S3548357 602621215F1 NCI_CGAP_Skn3 Homo sapiens cDNA c... 44 0.012
Alignment gnl|UG|Hs#S3619557 Homo sapiens ubiquitin specific protease 32 (... 44 0.012
Alignment gnl|UG|Hs#S4823133 Homo sapiens KIAA1765 protein (KIAA1765), mRN... 44 0.012
Alignment gnl|UG|Hs#S1729353 Homo sapiens ubiquitin specific protease 2 (U... 44 0.012
Alignment gnl|UG|Mm#S15645377 Mus musculus RIKEN cDNA 5430437P03 gene (543... 40 0.19
Alignment gnl|UG|Mm#S8539559 Mus musculus ubiquitin specific protease 2 (U... 40 0.19
Alignment gnl|UG|Bt#S14870350 706830 MARC 6BOV Bos taurus cDNA 5', mRNA se... 40 0.19
>gnl|UG|Hs#S1729352 Homo sapiens ubiquitin specific protease 11
(USP11), mRNA /cds=(1,2892) /gb=NM_004651 /gi=24234682
/ug=Hs.171501 /len=3290
Length = 3290
Score = 718 bits (362), Expect = 0.0
Identities = 703/816 (86%), Gaps = 3/816 (0%)
Strand = Plus / Plus
Query: 89 tgccgggcctcgagagccagcggcgccagatcgaaaacggcgagaatgggcgagggcgtc 148
|||| ||||| || |||||| |||||||||| ||||||||||||| |||||||| ||||
Sbjct: 224 tgccaggcctggacagccagtggcgccagatagaaaacggcgagagtgggcgagaacgtc 283
Query: 149 cgctgcaggccggcgaaagctggttcctcgtggagcagcactggtaccagaagtgggaag 208
| |||| ||||||||||||||||||||| |||||| |||||||||| || ||||||| |
Sbjct: 284 cactgcgggccggcgaaagctggttccttgtggagaagcactggtataagcagtgggagg 343
Query: 209 agtacgtgcagggaggagaccaggactccagcacctcccctggctgcatcaacaatgctg 268
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 344 catacgtgcagggaggggaccaggactccagcaccttccctggctgcatcaacaatgcca 403
Query: 269 ggctctttgaagaccaggtaaactggcgcctcaagaagggactggtggaaggtgaggact 328
|||||| |||| || ||||||||||||||||| |||||||||||||||| ||||| |
Sbjct: 404 cactctttcaagatgagataaactggcgcctcaaggagggactggtggaaggcgaggatt 463
Query: 329 atgtgctgctcccagcggctgcttggcattacctggtcaactggtatggtctagagcatg 388
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 464 atgtgctgctcccagcagctgcttggcattacctggtcagctggtatggtctagagcatg 523
Query: 389 gccagcctcctgtcgaacgcaaggtcgtggagctgcccggcatccagaaggtcgaagtgt 448
||||||| || | |||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct: 524 gccagccacccattgaacgcaaggtcatagagctgcccaacatccagaaggtcgaagtgt 583
Query: 449 acccagtagaactgctgcttgtccagcacagtgatatggacacagcccacactgctcaat 508
|||||||||||||||||||||||| ||||| |||| ||| || | | ||||||| ||| |
Sbjct: 584 acccagtagaactgctgcttgtccggcacaatgatttgggcaaatctcacactgttcagt 643
Query: 509 tcagccacacagattcgctcgacctcgtcttacacaccgcgcgggagcagtttctggtga 568
||||||| || ||||| | | ||| || || | ||| || ||||||| ||||||||||
Sbjct: 644 tcagccataccgattctattggcctagtattgcgcacagctcgggagcggtttctggtgg 703
Query: 569 gcccccaggaggagacacggctgtggatcaagaacgcagagggctcctttgagaggttgt 628
|||||||| || || ||||| ||| ||||||| |||| ||||| || || |||||||
Sbjct: 704 agccccaggaagacactcggctttgggccaagaactcagaaggctctttggataggttgt 763
Query: 629 gcaacacacacgtcacagtgcttgacgccgctctcaagactgggcaggtggtcatcatgg 688
|||||||| |||| || || || || || || ||||||||||| || |||||||||
Sbjct: 764 atgacacacacatcacggttctcgatgcggcccttgagactgggcagttgatcatcatgg 823
Query: 689 agacccgaaacaaggatggcacttggcccagcgcacagccgcacgccatgaacagcgcca 748
||||||| || || ||||||||||||||||||||||||| ||| | |||||||| | ||
Sbjct: 824 agacccgcaagaaagatggcacttggcccagcgcacagctgcatgtcatgaacaacaaca 883
Query: 749 ---cggaggaggaggaggacttccagggccagccaggcatctgcggtctcaccaatctgg 805
|||| ||||| ||||||||| |||| |||||||||||||| || |||||||||||||
Sbjct: 884 tgtcggaagaggatgaggacttcaagggtcagccaggcatctgtggcctcaccaatctgg 943
Query: 806 gcaacacgtgcttcatgaactcggccctgcagtgcctcagcaacgtgccgcagctcaccg 865
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 944 gcaacacgtgcttcatgaactcggccctgcagtgcctcagcaatgtgccacagctcaccg 1003
Query: 866 agtacttcctcaaaaaccgctacctggaggagctca 901
||||||||||||| ||| ||||||||||||||||||
Sbjct: 1004 agtacttcctcaacaactgctacctggaggagctca 1039
>gnl|UG|Mm#S9732866 Mus musculus ubiquitin specific protease 11
(Usp11), mRNA /cds=(705,2804) /gb=NM_145628 /gi=31981833
/ug=Mm.34489 /len=3444
Length = 3444
Score = 325 bits (164), Expect = 2e-87
Identities = 623/772 (80%), Gaps = 3/772 (0%)
Strand = Plus / Plus
Query: 132 gaatgggcgagggcgtccgctgcaggccggcgaaagctggttcctcgtggagcagcactg 191
||||||||||| |||||| |||| || ||||||||||||||||| |||||| | |||||
Sbjct: 151 gaatgggcgagagcgtccactgcgagctggcgaaagctggttccttgtggagaaacactg 210
Query: 192 gtaccagaagtgggaagagtacgtgcagggaggagaccaggactccagcacctcccctgg 251
||| | ||||||| | ||||||| ||||||| || || || | ||||||| |||||
Sbjct: 211 gtataaacagtgggaggtgtacgtgaagggaggggatcaagatgctagcacctttcctgg 270
Query: 252 ctgcatcaacaatgctgggctctttgaagaccaggtaaactggcgcctcaagaagggact 311
||| |||||||||||||||||||||||||| ||| ||| ||||| |||| | || ||||
Sbjct: 271 ctgtatcaacaatgctgggctctttgaagatcagataagctggcatctcagggagagact 330
Query: 312 ggtggaaggtgaggactatgtgctgctcccagcg-gctgcttggcattacctggtcaact 370
| | ||||| || || |||||||||||||||||| |||||||| | ||| |||||| ||
Sbjct: 331 gctagaaggagatgattatgtgctgctcccagcgccctgcttggaactacatggtcagct 390
Query: 371 ggtatggtctagagcatggccagcctcctgtcgaacgcaaggtcgtggagctgcccggca 430
||||||| || | |||||||||| ||| | || |||||||| | || || || ||||
Sbjct: 391 ggtatggcttaatggatggccagccacctattgagcgcaaggtaatagaacttcctggca 450
Query: 431 tccagaaggtcgaagtgtacccagtagaactgctgcttgtccagcacagtgatatggaca 490
| | |||||| |||||||||||| |||| || ||||| || ||||||||||||||||| |
Sbjct: 451 ttcggaaggtggaagtgtacccactagagctactgctcgttcagcacagtgatatggaaa 510
Query: 491 cagcccacactgctcaattcagccacacagattcgctcgacctcgtcttacacaccgcgc 550
|||| | ||| ||| || ||| | || ||||| | || || ||||| || || || |
Sbjct: 511 cagctctcaccattcagtttagctatactgattctgtggaactagtcttgcaaacagctc 570
Query: 551 gggagcagtttctggt-gagcccccaggaggagacacggctgtggatcaagaacgcagag 609
|||||||||||||||| ||| || ||||| || || || || |||| ||||||| |||||
Sbjct: 571 gggagcagtttctggtagag-cctcaggaagacacgcgcctctggaccaagaactcagag 629
Query: 610 ggctcctttgagaggttgtgcaacacacacgtcacagtgcttgacgccgctctcaagact 669
||||| || || | |||| || ||||| |||| ||||||| ||| || |||||
Sbjct: 630 ggctctttggatcgactgtgtaatacacagatcacgctgcttgatgcctgccttgagact 689
Query: 670 gggcaggtggtcatcatggagacccgaaacaaggatggcacttggcccagcgcacagccg 729
|||||| |||||||||||||||| |||||||| ||||||||||||||||| || |||| |
Sbjct: 690 gggcagttggtcatcatggagactcgaaacaaagatggcacttggcccagtgctcagctg 749
Query: 730 cacgccatgaacagcgccacggaggaggaggaggacttccagggccagccaggcatctgc 789
| |||||||| | |||| ||||| |||||||||||||| || || ||||||||
Sbjct: 750 tgtggcatgaacaacataccggacgaggatgaggacttccaggggcaaccgggcatctgt 809
Query: 790 ggtctcaccaatctgggcaacacgtgcttcatgaactcggccctgcagtgcctcagcaac 849
|| || ||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct: 810 ggccttaccaatctgggcaacacatgcttcatgaactcggcccaacagtgcctgagcaat 869
Query: 850 gtgccgcagctcaccgagtacttcctcaaaaaccgctacctggaggagctca 901
||||| ||||| || |||||||| ||||| || |||||||| ||||||||||
Sbjct: 870 gtgccacagctgacagagtactttctcaacaatcgctacctagaggagctca 921
Score = 36.2 bits (18), Expect = 2.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 25 atggcggcggtcgcagcg 42
||||||||||||||||||
Sbjct: 38 atggcggcggtcgcagcg 55
>gnl|UG|Mm#S8042549 Mus musculus ubiquitin specific protease 4
(proto-oncogene) (Usp4), mRNA /cds=(51,2939)
/gb=NM_011678 /gi=6755942 /ug=Mm.3974 /len=3655
Length = 3655
Score = 56.0 bits (28), Expect = 3e-06
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 802 ctgggcaacacgtgcttcatgaactcggccctgcagtgcctcagcaac 849
||||| ||||| |||||||||||||| || ||||||||||| ||||||
Sbjct: 969 ctggggaacacttgcttcatgaactctgctctgcagtgcctgagcaac 1016
>gnl|UG|Hs#S3548357 602621215F1 NCI_CGAP_Skn3 Homo sapiens cDNA
clone IMAGE:4746819 5', mRNA sequence
/clone=IMAGE:4746819 /clone_end=5' /gb=BG674993
/gi=13906389 /ti=44475308 /ug=Hs.464705 /len=1093
Length = 1093
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 828 ggccctgcagtgcctcagcaac 849
||||||||||||||||||||||
Sbjct: 881 ggccctgcagtgcctcagcaac 860
>gnl|UG|Hs#S3619557 Homo sapiens ubiquitin specific protease 32
(USP32), mRNA /cds=(173,4987) /gb=NM_032582 /gi=22550103
/ug=Hs.436133 /len=5154
Length = 5154
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 798 caatctgggcaacacgtgcttcatgaactc 827
||||||||| ||||| ||||||||||||||
Sbjct: 2383 caatctgggaaacacatgcttcatgaactc 2412
>gnl|UG|Hs#S4823133 Homo sapiens KIAA1765 protein (KIAA1765), mRNA
/cds=(98,1828) /gb=XM_047355 /gi=22044035 /ug=Hs.388304
/len=4734
Length = 4734
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 gagtacgtgcagggaggagacc 229
||||||||||||||||||||||
Sbjct: 1175 gagtacgtgcagggaggagacc 1196
>gnl|UG|Hs#S1729353 Homo sapiens ubiquitin specific protease 2 (USP2),
transcript variant 1, mRNA /cds=(225,2042) /gb=NM_004205
/gi=21361711 /ug=Hs.125902 /len=2633
Length = 2633
Score = 44.1 bits (22), Expect = 0.012
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 808 aacacgtgcttcatgaactcggccctgcagtgcctcagcaac 849
|||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1044 aacacgtgcttcatgaactcaattctgcagtgcctgagcaac 1085
>gnl|UG|Mm#S15645377 Mus musculus RIKEN cDNA 5430437P03 gene
(5430437P03Rik), mRNA /cds=(204,1205) /gb=NM_026636
/gi=30794445 /ug=Mm.21749 /len=1381
Length = 1381
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 738 gaacagcgccacggaggaggagga 761
||||||| ||||||||||||||||
Sbjct: 221 gaacagccccacggaggaggagga 244
>gnl|UG|Mm#S8539559 Mus musculus ubiquitin specific protease 2
(Usp2), mRNA /cds=(1,1062) /gb=NM_016808 /gi=7949157
/ug=Mm.12914 /len=1115
Length = 1115
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 808 aacacgtgcttcatgaactc 827
||||||||||||||||||||
Sbjct: 64 aacacgtgcttcatgaactc 83
>gnl|UG|Bt#S14870350 706830 MARC 6BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=CB452007 /gi=29258389
/ug=Bt.21063 /len=657
Length = 657
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 741 cagcgccacggaggaggagg 760
||||||||||||||||||||
Sbjct: 308 cagcgccacggaggaggagg 327
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,144
Number of Sequences: 249856
Number of extensions: 148144
Number of successful extensions: 15470
Number of sequences better than 10.0: 36
length of query: 904
length of database: 258,717,139
effective HSP length: 19
effective length of query: 885
effective length of database: 253,969,875
effective search space: 224763339375
effective search space used: 224763339375
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)