>20030826C-001770 (20030826C-001770) 20030826C-001770 TTCGTGTAGG GGAGGCTGGA AGCCGCAGGA GCGGGAGACG GTGGAGGGGA TTTTGAGAAG AAAACTGCGG TAGCGACCTC ACTCGGTGGT ACAAGAGGGG AACGCTAGTC CCTCCGAAAG CCGGGTTACT GCGAACGCAC CAGCTGAGCC CTTAGTACTG CAACCCCCAC CCTCCTTTGG TTTGTGGAGG AGCCTGACCA CTCTGCCTCT TATGGCCACA ATGCTGACCG CCCGCCTCTC CAGACCCCTG TCGCAGCTCC CAAGGAAAAC CCTGAATTTC TCTGAGAGAG AAAATGGAGC AAGAGGCTCG CTGCTGTTTT ACTCTCCCTC CTTTGTCCCT GGCAGCCGTC GGACTTATGC TGATTCGGTG AACCCGGTTG GCAGCAAAGC TGTCCTGGTC ACAGGCTGTG ACTCTGGATT TGGGTTCTCA CTGGCCAAGC ATCTGCATTC AAAAGGCTTC CTTGTATTTG CTGGCTGCTT GATGAAGGAC AAAGGGCATG ACGGGGTCAA GGAACTGGAC AGCTTGAAGA GTGATCGATT AAGAACCGTC CAGCTCAATG TCTGCAAAAG TGAAGAAGTA GAGAAAGTGG TGGAGACCAT CCGCTCGAGC TTGCAGGACC CTGAGAAAGG CTTGTGGGGC CTGGTTAACA ATGCAGGCAT CTCAACGTTC GGGGACGTGG AATTCACCAG CATGGAGACC TACAAGGAGG TGGCAGAAGT GAACCTCTGG GGCACGGTGC GGGTGACAAA ATCTTTTCTC CCTCTCATCC GGAGGGCCAA AGGCCGCGTG GTCAACATCA GCAGCATAAT GGGCGCTTGG CCAATGTGAG CCGCTCCCCC TACTGCATCA CCAAGTTCGG GGTGGAGGCT TTCTCTGACT GCCTGCGCTA CGAGATGCAC CCTCTAGGAG TGAAGGTCAG CGTGGTGGAG CCCGGCAACT TCATCGTCGC CACCAGCCTC TACAGCCCTG AGCGCATCCG GGCCATCGCC ACTAAGATGT GGGAGCAGGT GCCCGAGACG GTGCGTCAAG ACTACGGCAG GAAGTACTTT GATGAGATGG TCGCCAGGAT GGAGAACTTC TGCAACAGCG GCTCCACGGA CACGTCTCCC GTCATCAATG CTGTCACCCA CGCCCTGACC TCCACCACCC CCTACACTCG CTACCACCCC ATGGACTA
Query= 20030826C-001770 (20030826C-001770) 20030826C-001770
(1178 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S4001852 Homo sapiens 3-hydroxybutyrate dehydrogenase ... 910 0.0
Alignment gnl|UG|Ssc#S6072315 UNL-P-FN-an-c-03-0-UNL.s1 UNL-P-FN Sus scrof... 640 0.0
Alignment gnl|UG|Mm#S14303005 Mus musculus 3-hydroxybutyrate dehydrogenase... 626 e-178
Alignment gnl|UG|Ssc#S6090025 Sus scrofa hydroxysteroid 11-beta dehydrogen... 44 0.016
Alignment gnl|UG|Hs#S3438424 Homo sapiens calcium channel, voltage-depende... 40 0.24
Alignment gnl|UG|Mm#S8539592 Mus musculus retinol dehydrogenase 7 (Rdh7), ... 40 0.24
Alignment gnl|UG|Hs#S1495012 wh51a07.x1 NCI_CGAP_Kid11 Homo sapiens cDNA c... 38 0.96
Alignment gnl|UG|Hs#S4808558 Homo sapiens orphan short-chain dehydrogenase... 38 0.96
Alignment gnl|UG|Hs#S2293366 Homo sapiens asp (abnormal spindle)-like, mic... 38 0.96
Alignment gnl|UG|Hs#S16056953 Homo sapiens mRNA; cDNA DKFZp686I2295 (from ... 38 0.96
>gnl|UG|Hs#S4001852 Homo sapiens 3-hydroxybutyrate dehydrogenase
(heart, mitochondrial) (BDH), nuclear gene encoding
mitochondrial protein, mRNA /cds=(224,1255) /gb=NM_004051
/gi=17738291 /ug=Hs.434560 /len=1594
Length = 1594
Score = 910 bits (459), Expect = 0.0
Identities = 742/835 (88%), Gaps = 1/835 (0%)
Strand = Plus / Plus
Query: 345 gccgtcggacttatgctgattcggtgaacccggttggcagcaaagctgtcctggtcacag 404
|||||||||||||||| | ||| | | |||||||||||||||||||||||||||||||
Sbjct: 348 gccgtcggacttatgccagtgcggcggagccggttggcagcaaagctgtcctggtcacag 407
Query: 405 gctgtgactctggatttgggttctcactggccaagcatctgcattcaaaaggcttccttg 464
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 408 gctgtgactctggatttgggttctcattggccaagcatctgcattcaaaaggcttccttg 467
Query: 465 tatttgctggctgcttgatgaaggacaaagggcatgacggggtcaaggaactggacagct 524
| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 468 tgtttgctggctgcttgatgaaggacaaaggccatgatggggtcaaggagctggacagcc 527
Query: 525 tgaagagtgatcgattaagaaccgtccagctcaatgtctgcaaaagtgaagaagtagaga 584
| || ||||| ||||| ||||||||||||||||||||||||| || ||||| || ||||
Sbjct: 528 taaacagtgaccgattgagaaccgtccagctcaatgtctgcagcagcgaagaggtggaga 587
Query: 585 aagtggtggagaccatccgctcgagcttgcaggaccctgagaaaggcttgtggggcctgg 644
|||||||||||| ||||||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 588 aagtggtggagattgtccgctcgagcctgaaggaccctgagaaaggcatgtggggcctcg 647
Query: 645 ttaacaatgcaggcatctcaacgttcggggacgtggaattcaccagcatggagacctaca 704
|||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 648 ttaacaatgccggcatctcaacgttcggggaggtggagttcaccagcctggagacctaca 707
Query: 705 aggaggtggcagaagtgaacctctggggcacggtgcgggtgacaaaatcttttctccctc 764
|| ||||||||||||||||||| |||||||| |||||| |||| ||||| |||||||| |
Sbjct: 708 agcaggtggcagaagtgaacctttggggcacagtgcggatgacgaaatcctttctccccc 767
Query: 765 tcatccggagggccaaaggccgcgtggtcaacatcagcagcataatggg-cgcttggcca 823
||||||| ||||||||||||||||| ||||| ||||||||||| |||| ||| ||||||
Sbjct: 768 tcatccgaagggccaaaggccgcgtcgtcaatatcagcagcatgctgggccgcatggcca 827
Query: 824 atgtgagccgctccccctactgcatcaccaagttcggggtggaggctttctctgactgcc 883
| | ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 828 acccggcccgctccccgtactgcatcaccaagttcggggtagaggctttctcggactgcc 887
Query: 884 tgcgctacgagatgcaccctctaggagtgaaggtcagcgtggtggagcccggcaacttca 943
||||||| |||||| |||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 888 tgcgctatgagatgtaccccctgggcgtgaaggtcagcgtggtggagcccggcaacttca 947
Query: 944 tcgtcgccaccagcctctacagccctgagcgcatccgggccatcgccactaagatgtggg 1003
||| ||||||||||| |||||||||||| |||| | ||||||||||| ||||||||||
Sbjct: 948 tcgctgccaccagcctttacagccctgagagcattcaggccatcgccaagaagatgtggg 1007
Query: 1004 agcaggtgcccgagacggtgcgtcaagactacggcaggaagtactttgatgagatggtcg 1063
|| || |||| ||| ||||| | |||||||||| ||||||||||||||| | | |||
Sbjct: 1008 aggagctgcctgaggtcgtgcgcaaggactacggcaagaagtactttgatgaaaagatcg 1067
Query: 1064 ccaggatggagaacttctgcaacagcggctccacggacacgtctcccgtcatcaatgctg 1123
||| |||||||| || ||||| ||| |||||||| |||||||| || |||||| ||||||
Sbjct: 1068 ccaagatggagacctactgcagcagtggctccacagacacgtcccctgtcatcgatgctg 1127
Query: 1124 tcacccacgccctgacctccaccaccccctacactcgctaccaccccatggacta 1178
|||| |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 1128 tcacacacgccctgaccgccaccaccccctacacccgctaccaccccatggacta 1182
Score = 71.9 bits (36), Expect = 7e-11
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 221 atgctgaccgcccgcctctccagacccctgtcgcagctcccaaggaaaaccctgaatttc 280
|||||| || |||||||||||||||||||||| | ||||||| | |||||||| | | |
Sbjct: 224 atgctggccacccgcctctccagacccctgtcacggctcccaggaaaaaccctaagtgcc 283
Query: 281 tctgagagagaaaatggagcaaga 304
| ||| ||||||||||||||||||
Sbjct: 284 tgtgatagagaaaatggagcaaga 307
>gnl|UG|Ssc#S6072315 UNL-P-FN-an-c-03-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-an-c-03-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-an-c-03-0-UNL /clone_end=3' /gb=BI181529
/gi=14655938 /ug=Ssc.2997 /len=765
Length = 765
Score = 640 bits (323), Expect = 0.0
Identities = 332/335 (99%)
Strand = Plus / Minus
Query: 844 tgcatcaccaagttcggggtggaggctttctctgactgcctgcgctacgagatgcaccct 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tgcatcaccaagttcggggtggaggctttctctgactgcctgcgctacgagatgcaccct 706
Query: 904 ctaggagtgaaggtcagcgtggtggagcccggcaacttcatcgtcgccaccagcctctac 963
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctgggagtgaaggtcagcgtggtggagcccggcaacttcatcgtcgccaccagcctctac 646
Query: 964 agccctgagcgcatccgggccatcgccactaagatgtgggagcaggtgcccgagacggtg 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 645 agccctgagcgcatccgggccatcgccactaagatgtgggagcaggtgcccgaggcggtg 586
Query: 1024 cgtcaagactacggcaggaagtactttgatgagatggtcgccaggatggagaacttctgc 1083
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cgtcaagactacggcaagaagtactttgatgagatggtcgccaggatggagaacttctgc 526
Query: 1084 aacagcggctccacggacacgtctcccgtcatcaatgctgtcacccacgccctgacctcc 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aacagcggctccacggacacgtctcccgtcatcaatgctgtcacccacgccctgacctcc 466
Query: 1144 accaccccctacactcgctaccaccccatggacta 1178
|||||||||||||||||||||||||||||||||||
Sbjct: 465 accaccccctacactcgctaccaccccatggacta 431
>gnl|UG|Mm#S14303005 Mus musculus 3-hydroxybutyrate dehydrogenase
(heart, mitochondrial) (Bdh), mRNA /cds=(263,1294)
/gb=NM_175177 /gi=31982168 /ug=Mm.29884 /len=1734
Length = 1734
Score = 626 bits (316), Expect = e-178
Identities = 677/796 (85%), Gaps = 1/796 (0%)
Strand = Plus / Plus
Query: 384 gcaaagctgtcctggtcacaggctgtgactctggatttgggttctcactggccaagcatc 443
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcaaagctatcctgatcacaggctgtgactctggatttgggttctcactggccaagcatc 485
Query: 444 tgcattcaaaaggcttccttgtatttgctggctgcttgatgaaggacaaagggcatgacg 503
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 486 tgcactcaaaaggcttccttgtatttgctggctgtttgatgaaggacaaaggtgatgctg 545
Query: 504 gggtcaaggaactggacagcttgaagagtgatcgattaagaaccgtccagctcaatgtct 563
||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||
Sbjct: 546 gggtcaaggaactggacagcttgaagagtgaccgactgagaaccatccagctcaatgtct 605
Query: 564 gcaaaagtgaagaagtagagaaagtggtggagaccatccgctcgagcttgcaggaccctg 623
|||| |||||||| || ||||| | ||||||||| |||||||| || || | || ||||
Sbjct: 606 gcaacagtgaagaggtggagaaggcggtggagacgatccgctccggcctgaaagatcctg 665
Query: 624 agaaaggcttgtggggcctggttaacaatgcaggcatctcaacgttcggggacgtggaat 683
|||| || ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
Sbjct: 666 agaagggaatgtggggcctggttaacaacgcaggcatctcaacgtttggggaggtggagt 725
Query: 684 tcaccagcatggagacctacaaggaggtggcagaagtgaacctctggggcacggtgcggg 743
|||||||||||||||| || ||||||||||| ||||||||||||||||| || |||||
Sbjct: 726 tcaccagcatggagacatataaggaggtggctgaagtgaacctctggggaaccgtgcgca 785
Query: 744 tgacaaaatcttttctccctctcatccggagggccaaaggccgcgtggtcaacatcagca 803
|||||||| || || || || |||| || |||||||| ||||| || ||||||||||
Sbjct: 786 ccacaaaatccttccttccccttctccgaagagccaaaggtcgcgtcgttaacatcagca 845
Query: 804 gcataatggg-cgcttggccaatgtgagccgctccccctactgcatcaccaagttcgggg 862
|||| |||| ||| ||||||| |||||| || ||||||||||||||||| ||||
Sbjct: 846 gcatgctgggccgcatggccaaccccgcccgctcgccatactgcatcaccaagtttgggg 905
Query: 863 tggaggctttctctgactgcctgcgctacgagatgcaccctctaggagtgaaggtcagcg 922
| ||||||||||| |||||||||||||| |||||||||||||| || || |||||||| |
Sbjct: 906 tcgaggctttctcggactgcctgcgctatgagatgcaccctctgggtgtcaaggtcagtg 965
Query: 923 tggtggagcccggcaacttcatcgtcgccaccagcctctacagccctgagcgcatccggg 982
||||||| || ||||||||||| | |||||||| ||||||||||| |||||||||| ||
Sbjct: 966 tggtggaacctggcaacttcatagcggccaccagtctctacagccccgagcgcatccagg 1025
Query: 983 ccatcgccactaagatgtgggagcaggtgcccgagacggtgcgtcaagactacggcagga 1042
||||||||| ||||||||||| | |||| ||| || || | ||||| |||||||
Sbjct: 1026 ccatcgccaagaagatgtgggatgacctgcctgaggtcgtccgcaaggactatggcagga 1085
Query: 1043 agtactttgatgagatggtcgccaggatggagaacttctgcaacagcggctccacggaca 1102
||||||| ||||| | | | |||| |||||| | || |||||||||||| ||||| || |
Sbjct: 1086 agtacttcgatgaaaagattgccaagatggaaacctactgcaacagcggttccacagata 1145
Query: 1103 cgtctcccgtcatcaatgctgtcacccacgccctgacctccaccaccccctacactcgct 1162
| || | |||||||| |||||||| |||||| ||||| || ||||||| || || ||||
Sbjct: 1146 cttcctctgtcatcaacgctgtcacacacgccttgaccgccgccaccccgtatacccgct 1205
Query: 1163 accaccccatggacta 1178
|||| |||||||||||
Sbjct: 1206 accatcccatggacta 1221
Score = 50.1 bits (25), Expect = 3e-04
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 230 gcccgcctctccagacccctgtcgcagctccca 262
||||| ||||||||||||||||| |||||||||
Sbjct: 272 gcccgtctctccagacccctgtcacagctccca 304
>gnl|UG|Ssc#S6090025 Sus scrofa hydroxysteroid 11-beta dehydrogenase
2 mRNA, complete cds /cds=(66,1268) /gb=AF374414
/gi=20385594 /ug=Ssc.2635 /len=1386
Length = 1386
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 633 tgtggggcctggttaacaatgcaggc 658
||||||||||||| ||||||||||||
Sbjct: 547 tgtggggcctggtcaacaatgcaggc 572
>gnl|UG|Hs#S3438424 Homo sapiens calcium channel, voltage-dependent,
P/Q type, alpha 1A subunit (CACNA1A), transcript variant
2, mRNA /cds=(283,7800) /gb=NM_023035 /gi=13386497
/ug=Hs.400460 /len=7812
Length = 7812
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 703 caaggaggtggcagaagtga 722
||||||||||||||||||||
Sbjct: 2511 caaggaggtggcagaagtga 2530
>gnl|UG|Mm#S8539592 Mus musculus retinol dehydrogenase 7 (Rdh7),
mRNA /cds=(98,1048) /gb=NM_017473 /gi=8567341
/ug=Mm.6696 /len=1612
Length = 1612
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 635 tggggcctggttaacaatgcaggcatct 662
||||||||||| |||||||| |||||||
Sbjct: 416 tggggcctggtcaacaatgctggcatct 443
Score = 36.2 bits (18), Expect = 3.8
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 399 tcacaggctgtgactctggatttggg 424
|||| |||||||||||||| ||||||
Sbjct: 198 tcacgggctgtgactctggctttggg 223
>gnl|UG|Hs#S1495012 wh51a07.x1 NCI_CGAP_Kid11 Homo sapiens cDNA
clone IMAGE:2384244 3' similar to contains LOR1.b2 LOR1
LOR1 repetitive element ;, mRNA sequence
/clone=IMAGE:2384244 /clone_end=3' /gb=AI830424
/gi=5451095 /ug=Hs.470217 /len=487
Length = 487
Score = 38.2 bits (19), Expect = 0.96
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 attttgagaagaaaactgc 68
|||||||||||||||||||
Sbjct: 54 attttgagaagaaaactgc 72
>gnl|UG|Hs#S4808558 Homo sapiens orphan short-chain dehydrogenase /
reductase (SDR-O), mRNA /cds=(1,942) /gb=NM_148897
/gi=22507404 /ug=Hs.380178 /len=942
Length = 942
Score = 38.2 bits (19), Expect = 0.96
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 399 tcacaggctgtgactctgg 417
|||||||||||||||||||
Sbjct: 89 tcacaggctgtgactctgg 107
>gnl|UG|Hs#S2293366 Homo sapiens asp (abnormal spindle)-like,
microcephaly associated (Drosophila) (ASPM), mRNA
/cds=(1,10434) /gb=NM_018136 /gi=24211028 /ug=Hs.121028
/len=10434
Length = 10434
Score = 38.2 bits (19), Expect = 0.96
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 705 aggaggtggcagaagtgaa 723
|||||||||||||||||||
Sbjct: 215 aggaggtggcagaagtgaa 233
>gnl|UG|Hs#S16056953 Homo sapiens mRNA; cDNA DKFZp686I2295 (from clone
DKFZp686I2295) /gb=BX537595 /gi=31873676 /ug=Hs.94031
/len=5836
Length = 5836
Score = 38.2 bits (19), Expect = 0.96
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 312 tgctgttttactctccctccttt 334
||||||||| |||||||||||||
Sbjct: 2517 tgctgttttcctctccctccttt 2495
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181,233
Number of Sequences: 249856
Number of extensions: 181233
Number of successful extensions: 13650
Number of sequences better than 10.0: 42
length of query: 1178
length of database: 258,717,139
effective HSP length: 19
effective length of query: 1159
effective length of database: 253,969,875
effective search space: 294351085125
effective search space used: 294351085125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)