Search to UniGene2 database
Query= 20030826C-004517 (20030826C-004517) 20030826C-004517
(916 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S5930952 Homo sapiens hypothetical protein FLJ90193 (F... 761 0.0
Alignment gnl|UG|Mm#S9875834 Mus musculus cDNA sequence AB041591 (AB041591... 339 1e-91
Alignment gnl|UG|Bt#S14879310 720865 MARC 6BOV Bos taurus cDNA 3', mRNA se... 70 2e-10
Alignment gnl|UG|Hs#S2138754 Homo sapiens solute carrier 16 (monocarboxyli... 44 0.012
Alignment gnl|UG|Hs#S5916988 UI-E-EJ0-aht-j-12-0-UI.s1 UI-E-EJ0 Homo sapie... 40 0.19
Alignment gnl|UG|Hs#S3355573 Homo sapiens hypothetical protein MGC2654 (MG... 40 0.19
Alignment gnl|UG|Hs#S1732256 Homo sapiens hexose-6-phosphate dehydrogenase... 40 0.19
Alignment gnl|UG|Mm#S10849198 Mus musculus NOD-derived CD11c +ve dendritic... 40 0.19
Alignment gnl|UG|Mm#S8041539 Mus musculus Est2 repressor factor (Erf), mRN... 40 0.19
Alignment gnl|UG|Hs#S5935841 AGENCOURT_8584613 NIH_MGC_100 Homo sapiens cD... 38 0.74
>gnl|UG|Hs#S5930952 Homo sapiens hypothetical protein FLJ90193
(FLJ90193), mRNA /cds=(339,1754) /gb=NM_153357
/gi=23503292 /ug=Hs.336564 /len=1803
Length = 1803
Score = 761 bits (384), Expect = 0.0
Identities = 655/744 (88%), Gaps = 1/744 (0%)
Strand = Plus / Plus
Query: 146 cggcgatgacccccaagccagccggacccccggacgggggctggggctgggtggtggcgg 205
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 406 cggcgatgaccccccagcccgccggacccccggatgggggctggggctgggtggtggcgg 465
Query: 206 ccgcagccttcgtggtgaatgggctctcctacgggctgttacgctccctgggcctcgccc 265
|||||||||||| | | || ||||| |||||||||||| | ||||| |||||||| |||
Sbjct: 466 ccgcagccttcgcgataaacgggctgtcctacgggctgctgcgctcgctgggccttgcct 525
Query: 266 tccctgacctcgcggagcattttgaccgaagcgctcaggacactgcgtgggtcagcgccc 325
|||||||||| || ||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 526 tccctgaccttgccgagcactttgaccgaagcgcccaggacactgcgtggatcagcgccc 585
Query: 326 tggccttggcggtgcagcaggcagccagcccagtgggcagcgccctgagcacccgctggg 385
||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 586 tggccctggccgtgcagcaggcagccagccccgtgggcagcgccctgagcacgcgctggg 645
Query: 386 gggcgcgcccggttgtgatggttggaggcgtcctcacctcgctcggcttcgttttctcgg 445
|||| ||||| || ||||||||||| ||||||||| ||||||| |||||||| |||||||
Sbjct: 646 gggcccgccccgtggtgatggttgggggcgtcctcgcctcgctgggcttcgtcttctcgg 705
Query: 446 ctttcgcccgcagtctgctgcacctctatcttggcctgggcgtccttgctggcgccggct 505
|||||||| || ||||||||| ||||| || ||||||||| |||| |||||| || |
Sbjct: 706 ctttcgccagcgatctgctgcatctctacctcggcctgggcctcctcgctggctttggtt 765
Query: 506 gggccctggtgttcgcccctgcccttgggaccctctcacgttacttctcccgccgtcgag 565
||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct: 766 gggccctggtgttcgcccccgccctaggcaccctctcgcgttacttctcccgccgtcgag 825
Query: 566 tcttggccgtggggctggccctcacgggcaacggggcctcctcgctgctcctggcgcccg 625
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 826 tcttggcggtggggctggcgctcaccggcaacggggcctcctcgctgctcctggcgcccg 885
Query: 626 ccttgcagctcctcctggatcatttcggctggcggggcgccctgctcctcctcggcgccg 685
|||||||||| || || ||| |||||||||||||||||| |||||||||||||||||
Sbjct: 886 ccttgcagcttcttctcgatactttcggctggcggggcgctctgctcctcctcggcgcga 945
Query: 686 ttaccctccacctcaccccctgcggcgccctgctgcgacccctggagctcccaggcgacc 745
| |||||||||||||||||||| ||||||||||||| |||||||| || || || ||||
Sbjct: 946 tcaccctccacctcaccccctgtggcgccctgctgctacccctggtccttcctggagacc 1005
Query: 746 ccccgaccccaccccgaagccctctggcagccctcggcctaaatctcttcacacgccggg 805
|||| ||||||| || || || || || ||||||||||| | ||| |||||||||||||
Sbjct: 1006 ccccagccccaccgcgtagtcccctagctgccctcggcctgagtctgttcacacgccggg 1065
Query: 806 tcttcttggtttttgctctaggcacggccttggtgggcgggcgggtacttcatcccctac 865
||||| | |||||||||||||| ||| |||| || ||||||||||||| | || |||
Sbjct: 1066 ccttctcaatctttgctctaggcacagccctggttgg-gggcgggtacttcgttccttac 1124
Query: 866 gtgcacttggcccctcacgcttta 889
||||||||||| || |||||||||
Sbjct: 1125 gtgcacttggctccccacgcttta 1148
Score = 115 bits (58), Expect = 4e-24
Identities = 125/146 (85%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 1 ctgtttacccggagagcctgtgcaagttgggctccatctcggcattctctcccctctggg 60
||||||||| ||||||| || |||||||||||||||| | || || ||||||| |||
Sbjct: 5 ctgtttaccgagagagcccgtccaagttgggctccatcgctgccctcgctccccttcggg 64
Query: 61 gcccc-gcccgcccggaaagcggggagaaaaccgggccgagccattcctcgcccttcccc 119
||||| ||||||| || |||| | |||||| ||||||| |||| |||||| |||||||||
Sbjct: 65 gcccccgcccgcctgggaagcagagagaaagccgggcccagcccttcctcacccttcccc 124
Query: 120 tccccgcaccgccgggagaggtcggg 145
||||||||||||| ||||||||||||
Sbjct: 125 tccccgcaccgcccggagaggtcggg 150
>gnl|UG|Mm#S9875834 Mus musculus cDNA sequence AB041591 (AB041591),
mRNA /cds=(410,1282) /gb=NM_153081 /gi=23346494
/ug=Mm.46969 /len=1657
Length = 1657
Score = 339 bits (171), Expect = 1e-91
Identities = 318/367 (86%)
Strand = Plus / Plus
Query: 353 gcccagtgggcagcgccctgagcacccgctggggggcgcgcccggttgtgatggttggag 412
||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |
Sbjct: 360 gcccagtgggcagcgccctgagcactcgctggggggcacgccccgtggtgatggttgggg 419
Query: 413 gcgtcctcacctcgctcggcttcgttttctcggctttcgcccgcagtctgctgcacctct 472
| ||||| |||||||| ||||| || ||||||||||||||||| || || ||||||||||
Sbjct: 420 gagtcctaacctcgcttggcttggtcttctcggctttcgcccgaagcctcctgcacctct 479
Query: 473 atcttggcctgggcgtccttgctggcgccggctgggccctggtgttcgcccctgcccttg 532
| || ||||||||| |||| |||||| | ||||||||||||||||| ||||| ||||| |
Sbjct: 480 acctcggcctgggcctcctcgctggctctggctgggccctggtgtttgccccagccctgg 539
Query: 533 ggaccctctcacgttacttctcccgccgtcgagtcttggccgtggggctggccctcacgg 592
| |||||||| || ||||||||||||||||| |||||||| || ||| |||| ||||| |
Sbjct: 540 gtaccctctctcggtacttctcccgccgtcgggtcttggcggtagggttggcgctcaccg 599
Query: 593 gcaacggggcctcctcgctgctcctggcgcccgccttgcagctcctcctggatcatttcg 652
| || ||||| ||||||||||||||||| || ||||||||| ||||||| ||| |||||
Sbjct: 600 gtaatggggcatcctcgctgctcctggcacctgccttgcagttcctccttgatactttcg 659
Query: 653 gctggcggggcgccctgctcctcctcggcgccgttaccctccacctcaccccctgcggcg 712
|||||||||| ||| |||||||||| ||||| || ||||| |||||||| ||||| ||||
Sbjct: 660 gctggcggggtgccttgctcctccttggcgctgtcacccttcacctcacaccctgtggcg 719
Query: 713 ccctgct 719
|| ||||
Sbjct: 720 ccttgct 726
Score = 272 bits (137), Expect = 3e-71
Identities = 220/247 (89%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 73 cggaaagcggggagaaaaccgggccgagccattcctcgcccttcccctccccgcaccgcc 132
||||||||| |||||||| | |||||| || | |||||||| |||| ||| || ||||
Sbjct: 114 cggaaagcgcggagaaaatccggccgaacccaccttcgccctttccctacccccaacgcc 173
Query: 133 gggagaggtcggg---cggcgatgacccccaagccagccggacccccggacgggggctgg 189
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 174 gggagaggtcggcagacggcgatgacccccaagccggccggacccccggacgggggctgg 233
Query: 190 ggctgggtggtggcggccgcagccttcgtggtgaatgggctctcctacgggctgttacgc 249
||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||
Sbjct: 234 ggctgggtggtggcggccgcagcattcgccgtgaacgggctctcctacgggctcttacgc 293
Query: 250 tccctgggcctcgccctccctgacctcgcggagcattttgaccgaagcgctcaggacact 309
||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||||||
Sbjct: 294 tccctgggccttgccctccccgacctcgcggagcactttgaacgaagcgcccaggacact 353
Query: 310 gcgtggg 316
|||||||
Sbjct: 354 gcgtggg 360
Score = 36.2 bits (18), Expect = 2.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23 caagttgggctccatctc 40
||||||||||||||||||
Sbjct: 62 caagttgggctccatctc 79
>gnl|UG|Bt#S14879310 720865 MARC 6BOV Bos taurus cDNA 3', mRNA
sequence /clone_end=3' /gb=CB460947 /gi=29267331
/ug=Bt.6369 /len=678
Length = 678
Score = 69.9 bits (35), Expect = 2e-10
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 855 tcatcccctacgtgcacttggcccctcacgctttaaatcgggg 897
|||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 678 tcatcccctacgtgcacttggctcctcacgctttagatcgggg 636
>gnl|UG|Hs#S2138754 Homo sapiens solute carrier 16 (monocarboxylic
acid transporters), member 8 (SLC16A8), mRNA
/cds=(110,1624) /gb=NM_013356 /gi=7019528 /ug=Hs.270285
/len=1892
Length = 1892
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 172 cccccggacgggggctggggctgggtggtg 201
||||| ||||| ||||||||||||||||||
Sbjct: 143 cccccagacggcggctggggctgggtggtg 172
>gnl|UG|Hs#S5916988 UI-E-EJ0-aht-j-12-0-UI.s1 UI-E-EJ0 Homo sapiens
cDNA clone UI-E-EJ0-aht-j-12-0-UI 3', mRNA sequence
/clone=UI-E-EJ0-aht-j-12-0-UI /clone_end=3' /gb=BU739779
/gi=23678511 /ti=151720114 /ug=Hs.353152 /len=1608
Length = 1608
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 604 tcctcgctgctcctggcgcc 623
||||||||||||||||||||
Sbjct: 1130 tcctcgctgctcctggcgcc 1149
>gnl|UG|Hs#S3355573 Homo sapiens hypothetical protein MGC2654
(MGC2654), mRNA /cds=(256,873) /gb=NM_024109
/gi=13129121 /ug=Hs.306380 /len=1525
Length = 1525
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 655 tggcggggcgccctgctcct 674
||||||||||||||||||||
Sbjct: 773 tggcggggcgccctgctcct 792
>gnl|UG|Hs#S1732256 Homo sapiens hexose-6-phosphate dehydrogenase
(glucose 1-dehydrogenase) (H6PD), mRNA /cds=(273,2648)
/gb=NM_004285 /gi=4758497 /ug=Hs.194728 /len=2853
Length = 2853
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 660 gggcgccctgctcctcctcggcgc 683
|||||||||| |||||||||||||
Sbjct: 2283 gggcgccctggtcctcctcggcgc 2260
>gnl|UG|Mm#S10849198 Mus musculus NOD-derived CD11c +ve dendritic
cells cDNA, RIKEN full-length enriched library,
clone:F630027F05 product:weakly similar to KE03 PROTEIN
(FRAGMENT) [Homo sapiens], full insert sequence.
/gb=AK089186 /gi=26105126 /ug=Mm.23642 /len=2133
Length = 2133
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 337 gtgcagcaggcagccagccc 356
||||||||||||||||||||
Sbjct: 1109 gtgcagcaggcagccagccc 1128
>gnl|UG|Mm#S8041539 Mus musculus Est2 repressor factor (Erf), mRNA
/cds=(148,1803) /gb=NM_010155 /gi=6753771 /ug=Mm.8068
/len=1889
Length = 1889
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 608 cgctgctcctggcgcccgccttgc 631
||||||||||||||||||| ||||
Sbjct: 110 cgctgctcctggcgcccgcgttgc 87
>gnl|UG|Hs#S5935841 AGENCOURT_8584613 NIH_MGC_100 Homo sapiens cDNA
clone IMAGE:6285590 5', mRNA sequence
/clone=IMAGE:6285590 /clone_end=5' /gb=BU839447
/gi=24023842 /ug=Hs.465698 /len=1231
Length = 1231
Score = 38.2 bits (19), Expect = 0.74
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 178 gacgggggctggggctggg 196
|||||||||||||||||||
Sbjct: 166 gacgggggctggggctggg 148
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,779
Number of Sequences: 249856
Number of extensions: 143779
Number of successful extensions: 12141
Number of sequences better than 10.0: 38
length of query: 916
length of database: 258,717,139
effective HSP length: 19
effective length of query: 897
effective length of database: 253,969,875
effective search space: 227810977875
effective search space used: 227810977875
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)