Search to UniGene2 database
Query= 20030826C-005494 (20030826C-005494) 20030826C-005494
(937 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S1730721 Homo sapiens MCM6 minichromosome maintenance ... 1172 0.0
Alignment gnl|UG|Mm#S8039930 Mus musculus minichromosome maintenance defic... 716 0.0
Alignment gnl|UG|Hs#S15632056 Homo sapiens LOH11CR1I gene, loss of heteroz... 42 0.049
Alignment gnl|UG|Hs#S6112510 cs78e03.y1 Human Retinal pigment epithelium/c... 36 3.0
Alignment gnl|UG|Hs#S11141271 BX100742 Soares_fetal_heart_NbHH19W Homo sap... 36 3.0
Alignment gnl|UG|Hs#S2294215 Homo sapiens protocadherin beta 12 (PCDHB12),... 36 3.0
Alignment gnl|UG|Hs#S3603123 protocadherin-psi1 [Homo sapiens], mRNA seque... 36 3.0
Alignment gnl|UG|Hs#S4615947 Homo sapiens cDNA FLJ38177 fis, clone FCBBF10... 36 3.0
Alignment gnl|UG|Hs#S3219146 Homo sapiens protocadherin beta 13 (PCDHB13),... 36 3.0
Alignment gnl|UG|Hs#S2294216 Homo sapiens protocadherin beta 14 (PCDHB14),... 36 3.0
>gnl|UG|Hs#S1730721 Homo sapiens MCM6 minichromosome maintenance
deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
(MCM6), mRNA /cds=(56,2521) /gb=NM_005915 /gi=24431964
/ug=Hs.444118 /len=3744
Length = 3744
Score = 1172 bits (591), Expect = 0.0
Identities = 809/879 (92%), Gaps = 2/879 (0%)
Strand = Plus / Plus
Query: 55 atggacctcgcggcggcagcggaaccgagcgccggcagccagcacttagaagtccgcgac 114
||||||||||||||||||||||| ||| ||||||||||||||||| | || |||||||||
Sbjct: 56 atggacctcgcggcggcagcggagccgggcgccggcagccagcacctggaggtccgcgac 115
Query: 115 gaggtggccgaaaagtgccagaaattgttcctagatttcttggaggaattccagaacagc 174
||||||||||| |||||||||||| ||||||| || ||||||||||| || |||| ||||
Sbjct: 116 gaggtggccgagaagtgccagaaactgttcctggacttcttggaggagtttcagagcagc 175
Query: 175 gatggagaaattaagtacttgcagttagctgaggaactaattcgtcctgagagaaacaca 234
|||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 176 gatggagaaattaaatacttgcaattagcagaggaactgattcgtcctgagagaaacaca 235
Query: 235 ttggttgtgagttttgtggacctggagcaatttaaccagcaactttctaccactattcaa 294
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 236 ttggttgtgagttttgtggacctggaacaatttaaccagcaactttccaccaccattcaa 295
Query: 295 gaggagttctatagggtttacccttacctatgtcgcgctttgaaaacgtttgtcaaagac 354
|||||||||||||| |||||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 296 gaggagttctatagagtttacccttacctgtgtcgggccttgaaaacattcgtcaaagac 355
Query: 355 cgtaaagagattcccctggccaaggatttttatgttgcattccaagaccttcctaccaga 414
||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 356 cgtaaagagatccctcttgccaaggatttttatgttgcattccaagacctgcctaccaga 415
Query: 415 cacaaaattcgagaacttaactcatctagaattggtttgctcactcgcatcagtgggcag 474
||||| |||||||| || | |||||| |||||||||||||||||||||||||||||||||
Sbjct: 416 cacaagattcgagagctcacctcatccagaattggtttgctcactcgcatcagtgggcag 475
Query: 475 gtagtacggactcacccggttcacccagagcttgtgagcggaactttcctgtgcttggac 534
|| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 476 gtggtgcggactcacccagttcacccagagcttgtgagcggaacttttctgtgcttggac 535
Query: 535 tgtcaaacagtgatcagggacgtagaacagcagttcaagtacacacagccaaacatctgc 594
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 536 tgtcagacagtgatcagggatgtagaacagcagttcaaatacacacagccaaacatctgc 595
Query: 595 cgaaatccagtttgtgccaatagaaagagattcctgctagatacaaataaatcaagattt 654
|||||||||||||||||||| || | ||||||| | || |||||||||||||||||||||
Sbjct: 596 cgaaatccagtttgtgccaacaggaggagattcttactggatacaaataaatcaagattt 655
Query: 655 gttgattttcaaaaggttcgtattcaagagactcaagctgagcttccccgagggagtatc 714
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 656 gttgattttcaaaaggttcgtattcaagagacccaagctgagcttcctcgagggagtatc 715
Query: 715 ccccgcagcctagaagtgatcttgagggctgaagctgtggagtcagctcaagctggtgat 774
|||||||| ||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 716 ccccgcagtttagaagtaattttaagggctgaagctgtggaatcagctcaagctggtgac 775
Query: 775 aagtgtgacttcacaggaacgctgattgttgtgcctgacgtgtctaagcttagcacacca 834
||||||||||| ||||| || |||||||||||||||||||| || |||||||||||||||
Sbjct: 776 aagtgtgactttacagggacactgattgttgtgcctgacgtctccaagcttagcacacca 835
Query: 835 ggagcacgtgcagaaactaattcccgtgtgaatggtgttgatggatatgaagacagaaag 894
||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |
Sbjct: 836 ggagcacgtgcagaaactaattcccgtgtcagtggtgttgatggatatg-agacagaagg 894
Query: 895 gattcaaggaatcccgggcccttgttgttagggaccttt 933
|||| |||| | ||||||||||| ||||||||||||||
Sbjct: 895 cattcgaggact-ccgggcccttggtgttagggaccttt 932
>gnl|UG|Mm#S8039930 Mus musculus minichromosome maintenance
deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
(Mcm6), mRNA /cds=(92,2557) /gb=NM_008567 /gi=6678831
/ug=Mm.4933 /len=2901
Length = 2901
Score = 716 bits (361), Expect = 0.0
Identities = 697/809 (86%)
Strand = Plus / Plus
Query: 52 gccatggacctcgcggcggcagcggaaccgagcgccggcagccagcacttagaagtccgc 111
|||||||||||||| ||||| ||||| || ||||||| ||||||||| || || |||
Sbjct: 89 gccatggacctcgcagcggccgcggagcccggcgccggaagccagcacccggaggtgcgc 148
Query: 112 gacgaggtggccgaaaagtgccagaaattgttcctagatttcttggaggaattccagaac 171
|||||||||||||| || |||||||| |||||||||| ||| |||| || ||||||
Sbjct: 149 gacgaggtggccgagaaatgccagaagctgttcctagacttcctggaagagttccagggt 208
Query: 172 agcgatggagaaattaagtacttgcagttagctgaggaactaattcgtcctgagagaaac 231
|| |||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 209 agtgatggagaaattaaatacttgcagtttgcagaggagctaattcgtcctgagagaaac 268
Query: 232 acattggttgtgagttttgtggacctggagcaatttaaccagcaactttctaccactatt 291
|| ||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||
Sbjct: 269 acgctggttgtgagttttgcagacctggaacaatttaaccaacaactttctaccaccatt 328
Query: 292 caagaggagttctatagggtttacccttacctatgtcgcgctttgaaaacgtttgtcaaa 351
|| || ||||||||||| || ||||||||||| ||||| || ||||| || |||||||||
Sbjct: 329 caggaagagttctatagagtctacccttacctgtgtcgagccttgaagacctttgtcaaa 388
Query: 352 gaccgtaaagagattcccctggccaaggatttttatgttgcattccaagaccttcctacc 411
||||| || ||||| || | || ||||||||||||||||||||||||||||| |||||
Sbjct: 389 gaccgaaaggagatcccttttgctaaggatttttatgttgcattccaagacctacctact 448
Query: 412 agacacaaaattcgagaacttaactcatctagaattggtttgctcactcgcatcagtggg 471
|||||||| ||||| || || | ||||| || ||||| ||||||| || ||||||||
Sbjct: 449 agacacaagattcgtgagctcacttcatccaggattgggctgctcacccgaatcagtggc 508
Query: 472 caggtagtacggactcacccggttcacccagagcttgtgagcggaactttcctgtgcttg 531
||||| || || |||||||| |||||||| ||||||||||| ||||||||||||||| |
Sbjct: 509 caggtggtgcgcactcacccagttcaccctgagcttgtgagtggaactttcctgtgcctt 568
Query: 532 gactgtcaaacagtgatcagggacgtagaacagcagttcaagtacacacagccaaacatc 591
||||||||||||||||| | ||||||||| ||||||||||| ||||||||||| || |||
Sbjct: 569 gactgtcaaacagtgattaaggacgtagagcagcagttcaaatacacacagccgaatatc 628
Query: 592 tgccgaaatccagtttgtgccaatagaaagagattcctgctagatacaaataaatcaaga 651
|||||||||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||
Sbjct: 629 tgccgaaatccagtgtgtgccaacaggaagaggttccttctagacactaataaatcaaga 688
Query: 652 tttgttgattttcaaaaggttcgtattcaagagactcaagctgagcttccccgagggagt 711
||||||||||||||||||||||| ||||||||||||||||| || |||||||| || |||
Sbjct: 689 tttgttgattttcaaaaggttcgcattcaagagactcaagcggaacttccccggggaagt 748
Query: 712 atcccccgcagcctagaagtgatcttgagggctgaagctgtggagtcagctcaagctggt 771
|| ||||| || |||| || ||| |||| |||||||||||||||||||| |||||||||
Sbjct: 749 attccccggagtttagaggttatcctgagagctgaagctgtggagtcagcccaagctggt 808
Query: 772 gataagtgtgacttcacaggaacgctgattgttgtgcctgacgtgtctaagcttagcaca 831
|| | ||||| |||||||| | ||||||||||||||||| || || ||||||||||||
Sbjct: 809 gacagatgtgatttcacaggggcactgattgttgtgcctgatgtctccaagcttagcaca 868
Query: 832 ccaggagcacgtgcagaaactaattcccg 860
||||||||||||||||| ||||| |||||
Sbjct: 869 ccaggagcacgtgcagagactaactcccg 897
>gnl|UG|Hs#S15632056 Homo sapiens LOH11CR1I gene, loss of
heterozygosity, 11, chromosomal region 1 gene I product
/gb=AB096248 /gi=30314571 /ug=Hs.306864 /len=8991
Length = 8991
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 tggcgccggcggctcctcagc 43
|||||||||||||||||||||
Sbjct: 1974 tggcgccggcggctcctcagc 1994
>gnl|UG|Hs#S6112510 cs78e03.y1 Human Retinal pigment
epithelium/choroid cDNA (Un-normalized, unamplified): cs
Homo sapiens cDNA clone cs78e03 5', mRNA sequence
/clone=cs78e03 /clone_end=5' /gb=CA396481 /gi=24732905
/ug=Hs.501677 /len=486
Length = 486
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 28 ccggcggctcctcagcgc 45
||||||||||||||||||
Sbjct: 258 ccggcggctcctcagcgc 275
>gnl|UG|Hs#S11141271 BX100742 Soares_fetal_heart_NbHH19W Homo
sapiens cDNA clone IMAGp998H24742, mRNA sequence
/clone=IMAGp998H24742_;_IMAGE:327239 /gb=BX100742
/gi=27844605 /ug=Hs.441160 /len=560
Length = 560
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 653 ttgttgattttcaaaagg 670
||||||||||||||||||
Sbjct: 121 ttgttgattttcaaaagg 138
>gnl|UG|Hs#S2294215 Homo sapiens protocadherin beta 12 (PCDHB12), mRNA
/cds=(1,2388) /gb=NM_018932 /gi=14195593 /ug=Hs.429820
/len=3203
Length = 3203
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 830 caccaggagcacgtgcag 847
||||||||||||||||||
Sbjct: 1989 caccaggagcacgtgcag 1972
>gnl|UG|Hs#S3603123 protocadherin-psi1 [Homo sapiens], mRNA sequence
/cds=(1,1764) /gb=AF217751 /gi=14009464 /ug=Hs.284307
/len=3063
Length = 3063
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 830 caccaggagcacgtgcag 847
||||||||||||||||||
Sbjct: 1994 caccaggagcacgtgcag 1977
>gnl|UG|Hs#S4615947 Homo sapiens cDNA FLJ38177 fis, clone
FCBBF1000115, moderately similar to Homo sapiens
protocadherin beta 14 (PCDH-beta14) mRNA. /gb=AK095496
/gi=21754762 /ug=Hs.284306 /len=3166
Length = 3166
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 830 caccaggagcacgtgcag 847
||||||||||||||||||
Sbjct: 2180 caccaggagcacgtgcag 2163
>gnl|UG|Hs#S3219146 Homo sapiens protocadherin beta 13 (PCDHB13), mRNA
/cds=(188,2584) /gb=NM_018933 /gi=14195594 /ug=Hs.283803
/len=3485
Length = 3485
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 830 caccaggagcacgtgcag 847
||||||||||||||||||
Sbjct: 2176 caccaggagcacgtgcag 2159
>gnl|UG|Hs#S2294216 Homo sapiens protocadherin beta 14 (PCDHB14), mRNA
/cds=(1,2397) /gb=NM_018934 /gi=14195602 /ug=Hs.283678
/len=2793
Length = 2793
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 830 caccaggagcacgtgcag 847
||||||||||||||||||
Sbjct: 1989 caccaggagcacgtgcag 1972
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,730
Number of Sequences: 249856
Number of extensions: 122730
Number of successful extensions: 8864
Number of sequences better than 10.0: 23
length of query: 937
length of database: 258,717,139
effective HSP length: 19
effective length of query: 918
effective length of database: 253,969,875
effective search space: 233144345250
effective search space used: 233144345250
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)