Search to UniGene2 database
Query= 20030826S-004929 (20030826S-004929) 20030826S-004929
(1190 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, comple... 283 1e-74
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 220 1e-55
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clon... 161 1e-37
Alignment gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4 (LOC157... 145 6e-33
Alignment gnl|UG|Hs#S4824848 Homo sapiens similar to Tpm3 protein (LOC1259... 66 4e-09
Alignment gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA /cds=... 66 4e-09
Alignment gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scrof... 66 4e-09
Alignment gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDN... 52 6e-05
Alignment gnl|UG|Hs#S14812619 Homo sapiens, clone IMAGE:5582532, mRNA /gb=... 50 3e-04
Alignment gnl|UG|Hs#S4815743 Homo sapiens similar to tropomyosin 3 (LOC221... 48 0.001
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 283 bits (143), Expect = 1e-74
Identities = 197/215 (91%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 60
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 61 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 120
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaactcgctgat 296
||||| |||||||||||| |||| |||||| |||||| ||| ||||||||||||| |||
Sbjct: 121 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 180
Query: 297 gaggacttggatttggctcatgaacgactggccac 331
||||| ||||| |||||| ||||||||||||||
Sbjct: 181 gaggagttggacagggctcaggaacgactggccac 215
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 220 bits (111), Expect = 1e-55
Identities = 189/215 (87%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaactcgctgat 296
||||| |||||||| ||| | || || || | |||| || |||||||| |||| |||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtggccgccctcaaccgacgcatccagctcgttgag 230
Query: 297 gaggacttggatttggctcatgaacgactggccac 331
||||| ||||| |||||| ||||||||||||||
Sbjct: 231 gaggagttggacagggctcaggaacgactggccac 265
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 161 bits (81), Expect = 1e-37
Identities = 150/173 (86%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
|| ||||| ||||| ||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaact 289
||||| |||||||| ||| | || | ||| |||||| ||||||||||||||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaact 210
>gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4
(LOC157784), mRNA /cds=(55,537) /gb=XM_088391
/gi=27479113 /ug=Hs.447786 /len=1385
Length = 1385
Score = 145 bits (73), Expect = 6e-33
Identities = 176/208 (84%), Gaps = 3/208 (1%)
Strand = Plus / Plus
Query: 125 cctcaactccctggaggcggtgaaacgcaagatccagg-tcctgcagcagcaggcggacg 183
||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct: 31 cctcaactccctggaggcggtgaaatgcaagatccaggcccctgcagtagcaggcggacg 90
Query: 184 aggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgagcggcgtg 243
|||| ||||| |||||| |||||||| ||||||||||||||| |||||||| |||| |
Sbjct: 91 aggcggaaga--ccgcgcagggcctgcagcgggagctggacggcaagcgcgagtggcgcg 148
Query: 244 agaaagccgaaagggaagtagcacctctcactcgccgcatccaactcgctgatgaggact 303
||||||| ||| | || || || | |||| || |||||||| |||| ||| ||||| |
Sbjct: 149 agaaagctgaaggtgatgtggccaccctcaaccgacgcatccagctcgttgaggaggagt 208
Query: 304 tggatttggctcatgaacgactggccac 331
|||| |||||| ||||||||||||||
Sbjct: 209 tggacagggctcaggaacgactggccac 236
>gnl|UG|Hs#S4824848 Homo sapiens similar to Tpm3 protein
(LOC125966), mRNA /cds=(107,655) /gb=XM_058949
/gi=27485233 /ug=Hs.446913 /len=794
Length = 794
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 64 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 104
>gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA
/cds=(52,798) /gb=NM_153649 /gi=24119202 /ug=Hs.178468
/len=2089
Length = 2089
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 73 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 113
>gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-aj-f-09-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-aj-f-09-0-UNL /clone_end=3' /gb=BI181413
/gi=14655822 /ug=Ssc.1829 /len=714
Length = 714
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 101 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 141
>gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDNA
clone IMAGE:6048225 5', mRNA sequence
/clone=IMAGE:6048225 /clone_end=5' /gb=BQ217671
/gi=20399071 /ti=121457155 /ug=Hs.505712 /len=1049
Length = 1049
Score = 52.0 bits (26), Expect = 6e-05
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 145 tgaaacgcaagatccaggtcctgcagcagcaggc 178
|||| |||||||||||||| ||||||||||||||
Sbjct: 184 tgaagcgcaagatccaggttctgcagcagcaggc 217
>gnl|UG|Hs#S14812619 Homo sapiens, clone IMAGE:5582532, mRNA
/gb=BC047783 /gi=28839547 /ug=Hs.433293 /len=2917
Length = 2917
Score = 50.1 bits (25), Expect = 3e-04
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||| ||||| |||||||||||||| |||||||| |||||
Sbjct: 81 gaggcagtgaagcgcaagatccaggttctgcagcaccaggc 121
>gnl|UG|Hs#S4815743 Homo sapiens similar to tropomyosin 3
(LOC221875), mRNA /cds=(1,603) /gb=XM_167254
/gi=30152226 /ug=Hs.448309 /len=603
Length = 603
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 151 gcaagatccaggtcctgcagcagcaggc 178
||||||||||||| ||||||||||||||
Sbjct: 17 gcaagatccaggttctgcagcagcaggc 44
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,713
Number of Sequences: 249856
Number of extensions: 176713
Number of successful extensions: 14574
Number of sequences better than 10.0: 35
length of query: 1190
length of database: 258,717,139
effective HSP length: 19
effective length of query: 1171
effective length of database: 253,969,875
effective search space: 297398723625
effective search space used: 297398723625
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)