Search to UniGene2 database
Query= 20030826S-017680 (20030826S-017680) 20030826S-017680
(570 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRN... 159 2e-37
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA... 117 6e-25
Alignment gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), mR... 103 9e-21
Alignment gnl|UG|Bt#S12041279 LM24HW00316 Bos taurus LM-24-HW cDNA library... 98 6e-19
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRN... 94 9e-18
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 88 6e-16
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, comple... 88 6e-16
Alignment gnl|UG|Hs#S2949011 602249962F1 NIH_MGC_81 Homo sapiens cDNA clon... 76 2e-12
Alignment gnl|UG|Mm#S9108706 Mus musculus tropomyosin 3, gamma (Tpm3), mRN... 68 5e-10
Alignment gnl|UG|Hs#S152367 HSB66G112 STRATAGENE Human skeletal muscle cDN... 58 5e-07
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 159 bits (80), Expect = 2e-37
Identities = 152/176 (86%)
Strand = Plus / Plus
Query: 65 gccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 175
Query: 125 gaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtg 184
||||| ||||||||||| || | || ||||| |||||||| ||||||||| ||
Sbjct: 176 gaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagctg 235
Query: 185 ggggaggagctgacgcacctccacaagaagctgaaggggacagaggatgagctgga 240
| |||||||| | | |||||| ||||||||||||||||||||||||||| ||||
Sbjct: 236 gaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtgga 291
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 117 bits (59), Expect = 6e-25
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 63 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 122
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 123 tcgaccgggccgagcaggc 141
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 54.0 bits (27), Expect = 8e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 202 cctccacaagaagctgaaggggacagaggatgagctgga 240
|||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 169 cctccagaagaagctgaaggggacagaggacgaggtgga 207
>gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), mRNA
/cds=(151,1005) /gb=NM_000366 /gi=27597084 /ug=Hs.133892
/len=1265
Length = 1265
Score = 103 bits (52), Expect = 9e-21
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 66 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 125
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 149 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaggagaacgccttgg 208
Query: 126 accgggccgagcaggcggag 145
| || || ||||||||||||
Sbjct: 209 atcgagctgagcaggcggag 228
>gnl|UG|Bt#S12041279 LM24HW00316 Bos taurus LM-24-HW cDNA library
Bos taurus cDNA clone LM-24-HW-003-16 (5'), mRNA
sequence /clone=LM-24-HW-003-16_(5') /gb=BM888875
/gi=19277621 /ug=Bt.9448 /len=767
Length = 767
Score = 97.6 bits (49), Expect = 6e-19
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 68 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgc 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 atggaggccatcaagaaaaagatgcagatgctgaagctggacaaggagaacgc 120
Score = 50.1 bits (25), Expect = 1e-04
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 209 aagaagctgaaggggacagaggatgagctggac 241
||||||||||| ||||||||||| |||||||||
Sbjct: 209 aagaagctgaaagggacagaggacgagctggac 241
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(83,937) /gb=NM_024427 /gi=31560029 /ug=Mm.121878
/len=1703
Length = 1703
Score = 93.7 bits (47), Expect = 9e-18
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 66 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 125
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 126 accgggccgagcaggcggagtcggataagaa 156
| || || ||||| |||||| | ||||||||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaa 171
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 87.7 bits (44), Expect = 6e-16
Identities = 92/108 (85%)
Strand = Plus / Plus
Query: 74 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 133
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 134 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 181
|||||||||||| | |||||||| || || ||||| | | ||||||||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcag 110
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 87.7 bits (44), Expect = 6e-16
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 312 aaggggatgtagcagctctcaatcagcgcattcaactccctcaggacgagaagcacaggt 371
|||||||||||||||||||||||| |||||| |||||| | |||| ||| | |||||
Sbjct: 137 aaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacaggg 196
Query: 372 ctcaagaacgactatccacagccctgcctaatctcgaagaggcagaacaggctgcagatg 431
|||| |||||||| |||||||||||| || || || ||||||||| ||||||||||||
Sbjct: 197 ctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatg 256
>gnl|UG|Hs#S2949011 602249962F1 NIH_MGC_81 Homo sapiens cDNA clone
IMAGE:4328223 5', mRNA sequence /clone=IMAGE:4328223
/clone_end=5' /gb=BF789991 /gi=12095027 /ti=46412721
/ug=Hs.505684 /len=975
Length = 975
Score = 75.8 bits (38), Expect = 2e-12
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 68 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 117
||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct: 209 atggaggccatcaagaaaaagatgcagatgctgaagttagacaaggagaa 258
Score = 58.0 bits (29), Expect = 5e-07
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 209 aagaagctgaaggggacagaggatgagctggac 241
||||||||||| |||||||||||||||||||||
Sbjct: 350 aagaagctgaaagggacagaggatgagctggac 382
>gnl|UG|Mm#S9108706 Mus musculus tropomyosin 3, gamma (Tpm3), mRNA
/cds=(1,855) /gb=NM_022314 /gi=13928665 /ug=Mm.240839
/len=1052
Length = 1052
Score = 67.9 bits (34), Expect = 5e-10
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 68 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 117
||||||||||||||||| |||||||||||||||||| | ||||| |||||
Sbjct: 1 atggaggccatcaagaaaaagatgcagatgctgaagttagacaaagagaa 50
Score = 58.0 bits (29), Expect = 5e-07
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 209 aagaagctgaaggggacagaggatgagctggac 241
||||||||||| |||||||||||||||||||||
Sbjct: 142 aagaagctgaaagggacagaggatgagctggac 174
>gnl|UG|Hs#S152367 HSB66G112 STRATAGENE Human skeletal muscle cDNA
library, cat. #936215. Homo sapiens cDNA clone 66G11,
mRNA sequence /clone=66G11 /gb=F00822 /gi=707691
/ug=Hs.448810 /len=342
Length = 342
Score = 58.0 bits (29), Expect = 5e-07
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 209 aagaagctgaaggggacagaggatgagctggac 241
||||||||||| |||||||||||||||||||||
Sbjct: 268 aagaagctgaaagggacagaggatgagctggac 236
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,193
Number of Sequences: 249856
Number of extensions: 92193
Number of successful extensions: 7795
Number of sequences better than 10.0: 74
length of query: 570
length of database: 258,717,139
effective HSP length: 19
effective length of query: 551
effective length of database: 253,969,875
effective search space: 139937401125
effective search space used: 139937401125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)