Search to UniGene2 database
Query= 20030826S-018815 (20030826S-018815) 20030826S-018815
(366 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, comple... 234 2e-60
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 188 1e-46
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clon... 145 2e-33
Alignment gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4 (LOC157... 121 2e-26
Alignment gnl|UG|Hs#S4824848 Homo sapiens similar to Tpm3 protein (LOC1259... 56 1e-06
Alignment gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA /cds=... 56 1e-06
Alignment gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scrof... 56 1e-06
Alignment gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDN... 48 3e-04
Alignment gnl|UG|Hs#S4815743 Homo sapiens similar to tropomyosin 3 (LOC221... 46 0.001
Alignment gnl|UG|Hs#S14812619 Homo sapiens, clone IMAGE:5582532, mRNA /gb=... 40 0.073
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 234 bits (118), Expect = 2e-60
Identities = 139/146 (95%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 60
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 61 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 120
Query: 246 cggtgggagaaagccgaaggggatgt 271
||| ||||||||||||||||||||||
Sbjct: 121 cggcgggagaaagccgaaggggatgt 146
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 188 bits (95), Expect = 1e-46
Identities = 134/147 (91%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
||||||||||| || || | |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 246 cggtgggagaaagccgaaggggatgtg 272
||| | |||||||| ||||| ||||||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtg 197
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 145 bits (73), Expect = 2e-33
Identities = 127/145 (87%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
|| ||||| |||||||||| |||||| ||||||||| | || ||||| ||||| ||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 246 cggtgggagaaagccgaaggggatg 270
||| | |||||||| ||||| ||||
Sbjct: 158 cggcgcgagaaagctgaaggagatg 182
>gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4
(LOC157784), mRNA /cds=(55,537) /gb=XM_088391
/gi=27479113 /ug=Hs.447786 /len=1385
Length = 1385
Score = 121 bits (61), Expect = 2e-26
Identities = 122/140 (87%), Gaps = 3/140 (2%)
Strand = Plus / Plus
Query: 134 cctcaactccctggaggcggtgagacgcaagatccagg-ccctgcagcagcaggcggacg 192
||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||||
Sbjct: 31 cctcaactccctggaggcggtgaaatgcaagatccaggcccctgcagtagcaggcggacg 90
Query: 193 aggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgagcggtggg 252
|||| || || |||||| ||||||||| |||||||||||||| | |||||| || | |
Sbjct: 91 aggcggaaga--ccgcgcagggcctgcagcgggagctggacggcaagcgcgagtggcgcg 148
Query: 253 agaaagccgaaggggatgtg 272
||||||| ||||| ||||||
Sbjct: 149 agaaagctgaaggtgatgtg 168
>gnl|UG|Hs#S4824848 Homo sapiens similar to Tpm3 protein
(LOC125966), mRNA /cds=(107,655) /gb=XM_058949
/gi=27485233 /ug=Hs.446913 /len=794
Length = 794
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 64 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 119
>gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA
/cds=(52,798) /gb=NM_153649 /gi=24119202 /ug=Hs.178468
/len=2089
Length = 2089
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 73 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 128
>gnl|UG|Ssc#S6072240 UNL-P-FN-aj-f-09-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-aj-f-09-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-aj-f-09-0-UNL /clone_end=3' /gb=BI181413
/gi=14655822 /ug=Ssc.1829 /len=714
Length = 714
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 101 gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagagga 156
>gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDNA
clone IMAGE:6048225 5', mRNA sequence
/clone=IMAGE:6048225 /clone_end=5' /gb=BQ217671
/gi=20399071 /ti=121457155 /ug=Hs.505712 /len=1049
Length = 1049
Score = 48.1 bits (24), Expect = 3e-04
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 159 cgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 189 cgcaagatccaggttctgcagcagcaggcagatgatgcagagga 232
>gnl|UG|Hs#S4815743 Homo sapiens similar to tropomyosin 3
(LOC221875), mRNA /cds=(1,603) /gb=XM_167254
/gi=30152226 /ug=Hs.448309 /len=603
Length = 603
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 160 gcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||||| |||||||||||||| || || ||||||||
Sbjct: 17 gcaagatccaggttctgcagcagcaggcagatgatgcagagga 59
>gnl|UG|Hs#S14812619 Homo sapiens, clone IMAGE:5582532, mRNA
/gb=BC047783 /gi=28839547 /ug=Hs.433293 /len=2917
Length = 2917
Score = 40.1 bits (20), Expect = 0.073
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 159 cgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
||||||||||||| |||||||| ||||| || || ||||||||
Sbjct: 93 cgcaagatccaggttctgcagcaccaggcagatgatgcagagga 136
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,145
Number of Sequences: 249856
Number of extensions: 51145
Number of successful extensions: 4550
Number of sequences better than 10.0: 52
length of query: 366
length of database: 258,717,139
effective HSP length: 18
effective length of query: 348
effective length of database: 254,219,731
effective search space: 88468466388
effective search space used: 88468466388
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)