>20030826S-020920 (20030826S-020920) 20030826S-020920 GAAGACTCGC CCCGCAGCAG GGCGGTGCAC CCCAGGAGCC TATAAGGGCT TCTCCTCCAC CCGGCCGGCT CACTCGACCC CGACGCCGCT GCCGCCGCAG GCCCCTCCAC GCCCACACCC CCTACCCACT GCCCAGCCAT GGAGGCCATC AAGAAGAAGA TGCAGATGCT GAAGCTGGAC AAGGAGAACG CCATCGACCG GGCCGAGCAG GCGGAGTCGG ATAAGAAAGC TGCTGAGGAG AAGTGCAAGC AGGTGGAGGA GGAGCTGACG CACCTCCAGA AGAAGCTGAA GGGGACAGAG GATGAGCTGG ACAAATACTC CGAGAACCTG AAGGACGCGC AGGAAAAGCT GGAGCTGAGC GAGAAGAAAG CCTCCGACGC CGAAGGGGAT GTAGCAGCTC TCAATCGGCG CATCCAACTC GTTGAGGAGG AGTTGGACAG GGCTCAGGAA CGACTGGCCA CAGCCCTGCA GAAGCTTGAG GAGGCAGAAA AGGCTGCAGA TGAGAGCGAG AGAGGAATGA AGGTGATAGA AAACCGGGCC ATGAAAGATG AGGAGAAGAT GGAGATTCAG GAGATGCAGC TCANAGAGGC CAAGCACATT GCCGAGGAGG CCGACCGCAA ATACGAGGAG GTAGCTCGTA AGTTGGTCAT CCTGGAGGGC GAGCTGGAGA GGGCAGAGGA GCGTGCCGAG GTGTCTGAAC TAAAATGTGG TGACCTGTAA GAAGAAACTC AGAATGTCAC CAACACCTGA AGTCGCTAGA GGCTGCATCT GAAAAGTATT CTGAAAAGGA G
Query= 20030826S-020920 (20030826S-020920) 20030826S-020920
(791 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
249,856 sequences; 258,717,139 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, comple... 761 0.0
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 565 e-159
Alignment gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4 (LOC157... 436 e-121
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRN... 347 5e-94
Alignment gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clon... 343 8e-93
Alignment gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens... 287 4e-76
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA... 252 2e-65
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRN... 246 1e-63
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 238 3e-61
Alignment gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), mR... 190 7e-47
>gnl|UG|Ssc#S6090943 Sus scrofa tropomyosin 4 (TPM4) mRNA, complete
cds /cds=(1,747) /gb=AF087679 /gi=3661526 /ug=Ssc.12963
/len=853
Length = 853
Score = 761 bits (384), Expect = 0.0
Identities = 410/415 (98%), Gaps = 3/415 (0%)
Strand = Plus / Plus
Query: 379 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 192
Query: 439 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 252
Query: 499 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 312
Query: 559 atggagattcaggagatgcagctcanagaggccaagcacattgccgaggaggccgaccgc 618
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 313 atggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgc 372
Query: 619 aaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagag 432
Query: 679 gagcgtgccgaggtgtctgaactaaaatgtggtgacctgtaagaagaaactc-agaatgt 737
||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct: 433 gagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaag-aactcaagaatgt 491
Query: 738 caccaac-acctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggag 791
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggag 546
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 565 bits (285), Expect = e-159
Identities = 383/412 (92%), Gaps = 3/412 (0%)
Strand = Plus / Plus
Query: 382 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 441
||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 186 gaaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggaggagttggacagg 245
Query: 442 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 501
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct: 246 gctcaggaacgactggccacggccctgcagaagctggaggaggcagaaaaagctgcagat 305
Query: 502 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 561
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 306 gagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatg 365
Query: 562 gagattcaggagatgcagctcanagaggccaagcacattgccgaggaggccgaccgcaaa 621
|||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||
Sbjct: 366 gagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaa 425
Query: 622 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 681
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 426 tacgaggaggtagctcgtaagctggtcatcctggagggtgagctggagagggcagaggag 485
Query: 682 cgtgccgaggtgtctgaactaaaatgtggtgacctgtaagaagaaactc-agaatgtcac 740
||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||
Sbjct: 486 cgtgcggaggtgtctgaactaaaatgtggtgacctggaagaag-aactcaagaatgttac 544
Query: 741 caac-acctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggag 791
||| | ||||| || || |||||||||||||||||||||||||||||||||
Sbjct: 545 taacaatctgaaatctctggaggctgcatctgaaaagtattctgaaaaggag 596
>gnl|UG|Hs#S4825361 Homo sapiens similar to tropomyosin 4
(LOC157784), mRNA /cds=(55,537) /gb=XM_088391
/gi=27479113 /ug=Hs.447786 /len=1385
Length = 1385
Score = 436 bits (220), Expect = e-121
Identities = 270/287 (94%)
Strand = Plus / Plus
Query: 400 ctcaatcggcgcatccaactcgttgaggaggagttggacagggctcaggaacgactggcc 459
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ctcaaccgacgcatccagctcgttgaggaggagttggacagggctcaggaacgactggcc 234
Query: 460 acagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatg 519
||||||||||||||||| |||||||||||||| | |||||||||||| || |||||||||
Sbjct: 235 acagccctgcagaagctggaggaggcagaaaaagttgcagatgagagtgaaagaggaatg 294
Query: 520 aaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcag 579
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 295 aaggtgatagaaaaccgggccatgaaggatgaggagaagatggagattcaggagatgcag 354
Query: 580 ctcanagaggccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgt 639
|||| |||||||||||||||||| || |||| ||||||||||||||| |||||||||||
Sbjct: 355 ctcaaagaggccaagcacattgcggaaaaggctgaccgcaaatacgagaaggtagctcgt 414
Query: 640 aagttggtcatcctggagggcgagctggagagggcagaggagcgtgc 686
||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 415 aagctggtcatcctggagggtgagctggagagggcagaggagcgtgc 461
Score = 73.8 bits (37), Expect = 1e-11
Identities = 98/113 (86%), Gaps = 4/113 (3%)
Strand = Plus / Plus
Query: 681 gcgtgccgaggtgtctgaactaaaatgtggtgacctgtaagaagaaactca-gaatgtca 739
|||||| |||||||| |||||||||||||||||| || | ||||| |||| |||||| |
Sbjct: 468 gcgtgcggaggtgtccgaactaaaatgtggtgacgtggca-aagaa-ctcaagaatgtta 525
Query: 740 ccaacac-ctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggag 791
| |||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 526 ctaacaatctgaaatcgctggaagctgcatctgaaaagtattctgaaaaggag 578
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 347 bits (175), Expect = 5e-94
Identities = 444/534 (83%)
Strand = Plus / Plus
Query: 136 gccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 195
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatc 175
Query: 196 gaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtg 255
||||| ||||||||||| || | || ||||| |||||||| ||||||||| ||
Sbjct: 176 gaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagctg 235
Query: 256 gaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaa 315
|||||||||| | | |||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 236 gaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtggaaaag 295
Query: 316 tactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcctcc 375
|| || || | ||||||| || ||||| || ||||||| | ||||||||| ||| |
Sbjct: 296 tattctgaatccgtgaaggaggcccaggagaaactggagcaggccgagaagaaggccact 355
Query: 376 gacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttg 435
|| || || | ||||| || | || || || ||||| || || |||||||||||| ||
Sbjct: 356 gatgctgaggcagatgtggcctccctgaaccgccgcattcagctggttgaggaggagctg 415
Query: 436 gacagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggct 495
||| |||| ||||| || ||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 416 gaccgggcccaggagcgcctggctacagccctgcagaagctggaggaggccgagaaggcg 475
Query: 496 gcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggag 555
|| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 476 gctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggccatgaaggatgaggag 535
Query: 556 aagatggagattcaggagatgcagctcanagaggccaagcacattgccgaggaggccgac 615
|||||||| | |||||||||||||| | |||||||||||||| || ||||| | |||
Sbjct: 536 aagatggaactgcaggagatgcagctgaaggaggccaagcacatcgctgaggattcagac 595
Query: 616 cgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggag 669
|||||||| || ||||| || | ||| |||| |||||||| || |||||||||
Sbjct: 596 cgcaaatatgaagaggtggccaggaagctggtgatcctggaaggagagctggag 649
>gnl|UG|Mm#S11102429 Mus musculus, Similar to tropomyosin 4, clone
IMAGE:5345587, mRNA /gb=BC023701 /gi=23958443
/ug=Mm.27685 /len=2118
Length = 2118
Score = 343 bits (173), Expect = 8e-93
Identities = 355/412 (86%), Gaps = 3/412 (0%)
Strand = Plus / Plus
Query: 382 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 441
||||| |||| ||| |||||||| || ||||||||||| | |||||||| ||||| ||
Sbjct: 173 gaaggagatgcagccgctctcaaccgccgcatccaactgctggaggaggaactggaccgg 232
Query: 442 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 501
|||||||| | |||||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 233 gctcaggagcagctggccacagccctgcagaatctggaagaggcagagaaggctgctgat 292
Query: 502 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 561
||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 293 gagagtgagagaggcatgaaggtaatagagaaccgagccatgaaagatgaggaaaagatg 352
Query: 562 gagattcaggagatgcagctcanagaggccaagcacattgccgaggaggccgaccgcaaa 621
||||| | |||||||||||||| ||| ||||||||||| | || || |||||||||||
Sbjct: 353 gagatcctggagatgcagctcaaagaagccaagcacatcactgatgaagccgaccgcaag 412
Query: 622 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 681
|| |||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct: 413 tatgaggaggttgctcgtaagttggtcatcctggagggtgagctgaaaagagcagaggag 472
Query: 682 cgtgccgaggtgtctgaactaaaatgtggtgacctgtaagaagaaactc-agaatgtcac 740
|| || ||||| ||||||||||| |||||||||||| |||||| | ||| ||||||| ||
Sbjct: 473 cgggcggaggtatctgaactaaagtgtggtgacctggaagaag-agctcaagaatgtaac 531
Query: 741 caac-acctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggag 791
||| | ||||| || || |||||||| ||||||||||||||||||||||||
Sbjct: 532 taacaatctgaaatcactggaggctgcttctgaaaagtattctgaaaaggag 583
>gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens
cDNA, mRNA sequence /gb=BE770853 /gi=10224511
/ug=Hs.478600 /len=396
Length = 396
Score = 287 bits (145), Expect = 4e-76
Identities = 168/176 (95%)
Strand = Plus / Minus
Query: 493 gctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgag 552
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 182 gctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgag 123
Query: 553 gagaagatggagattcaggagatgcagctcanagaggccaagcacattgccgaggaggcc 612
||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct: 122 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggct 63
Query: 613 gaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctgga 668
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 62 gaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctgga 7
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 252 bits (127), Expect = 2e-65
Identities = 351/426 (82%)
Strand = Plus / Plus
Query: 244 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 303
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 304 gagctggacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgag 363
||| |||| || || |||||| | ||||||| || ||||| || ||||||| | |||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 364 aagaaagcctccgacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgtt 423
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 424 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 483
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 484 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 543
|| || || || || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 380 gctgagaaagccgcggatgagagcgagagaggaatgaaggtcattgaaaaccgggccatg 439
Query: 544 aaagatgaggagaagatggagattcaggagatgcagctcanagaggccaagcacattgcc 603
|| |||||||| ||||||||| | |||||||||||||| | || ||||||||||| ||
Sbjct: 440 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaagccaagcacatcgct 499
Query: 604 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 663
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 500 gaggactcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggggag 559
Query: 664 ctggag 669
||||||
Sbjct: 560 ctggag 565
Score = 117 bits (59), Expect = 9e-25
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 134 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 193
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 194 tcgaccgggccgagcaggc 212
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(83,937) /gb=NM_024427 /gi=31560029 /ug=Mm.121878
/len=1703
Length = 1703
Score = 246 bits (124), Expect = 1e-63
Identities = 441/547 (80%)
Strand = Plus / Plus
Query: 137 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 196
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 197 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 256
| || || ||||| |||||| | |||||||| || || || || | |||||||| |||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaaggcggcggaagaccggagcaagcagctgg 200
Query: 257 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 316
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 201 aagatgagctggtgtcactgcaaaagaaactcaagggcactgaagatgaactggacaaat 260
Query: 317 actccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcctccg 376
|||||||| || || || || ||||| || ||||||||| ||||| || ||| | |
Sbjct: 261 actccgaggctctcaaagatgcccaggagaaactggagctggcggagaaaaaggccacag 320
Query: 377 acgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttgg 436
| || |||| || ||||| |||| || | |||||||| || ||||||||||||||||
Sbjct: 321 atgctgaagctgacgtagcttctctgaacagacgcatccagctggttgaggaggagttgg 380
Query: 437 acagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctg 496
| | |||||||| || ||||||||||| ||||||||||| |||||||| || |||||||
Sbjct: 381 atcgtgctcaggagcgtctggccacagctctgcagaagctggaggaggccgagaaggctg 440
Query: 497 cagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggaga 556
|||||||||| |||||||| ||||| || || |||| ||| ||| |||||||| || |
Sbjct: 441 cagatgagagtgagagaggcatgaaagtcattgaaagccgagcccaaaaagatgaagaaa 500
Query: 557 agatggagattcaggagatgcagctcanagaggccaagcacattgccgaggaggccgacc 616
||||||||||||||||||| ||||| | |||||||||||||||||| || || || ||||
Sbjct: 501 agatggagattcaggagatccagctgaaagaggccaagcacattgctgaagatgctgacc 560
Query: 617 gcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcag 676
| || || || ||||| || |||||| |||||||| | ||| |||| ||||| | ||||
Sbjct: 561 ggaagtatgaagaggtggcccgtaagctggtcatcatcgagagcgacctggaacgtgcag 620
Query: 677 aggagcg 683
|||||||
Sbjct: 621 aggagcg 627
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 238 bits (120), Expect = 3e-61
Identities = 410/507 (80%)
Strand = Plus / Plus
Query: 145 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 204
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 205 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 264
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 265 ctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaatactccgag 324
||| | || || |||||||| |||| || || ||||| ||||||||||| ||||||
Sbjct: 123 ctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatattccgag 182
Query: 325 aacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcctccgacgccgaa 384
|| || || || ||||| |||||||||||| ||||| || ||| |||| || |||
Sbjct: 183 gctctcaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgatgctgaa 242
Query: 385 ggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagggct 444
| |||||||| |||| || | ||||||||||| |||||||| ||| ||||| | ||
Sbjct: 243 gccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggaccgtgcc 302
Query: 445 caggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgag 504
||||| |||||||| ||||| | ||||| ||||||||||| || ||||| |||||||||
Sbjct: 303 caggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagcagatgag 362
Query: 505 agcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggag 564
|| |||||||| ||||| || || |||| ||| ||| || ||||||||||| |||||
Sbjct: 363 agtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaa 422
Query: 565 attcaggagatgcagctcanagaggccaagcacattgccgaggaggccgaccgcaaatac 624
||||||||||| ||||| | ||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 423 attcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtat 482
Query: 625 gaggaggtagctcgtaagttggtcatc 651
|| ||||| || |||||| ||||||||
Sbjct: 483 gaagaggtggcccgtaagctggtcatc 509
>gnl|UG|Hs#S1728083 Homo sapiens tropomyosin 1 (alpha) (TPM1), mRNA
/cds=(151,1005) /gb=NM_000366 /gi=27597084 /ug=Hs.133892
/len=1265
Length = 1265
Score = 190 bits (96), Expect = 7e-47
Identities = 434/547 (79%)
Strand = Plus / Plus
Query: 137 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 196
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 149 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaggagaacgccttgg 208
Query: 197 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 256
| || || |||||||||||| | || ||||| || || || || | | |||||||| |||
Sbjct: 209 atcgagctgagcaggcggaggccgacaagaaggcggcggaagacaggagcaagcagctgg 268
Query: 257 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 316
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 269 aagatgagctggtgtcactgcaaaagaaactcaagggcaccgaagatgaactggacaaat 328
Query: 317 actccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcctccg 376
| || ||| || || || || ||||| |||||||||||| ||||| || ||| |||
Sbjct: 329 attctgaggctctcaaagatgcccaggagaagctggagctggcagagaaaaaggccaccg 388
Query: 377 acgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttgg 436
| || |||| || ||||| |||| || | |||||||| || |||||||| |||||||
Sbjct: 389 atgctgaagccgacgtagcttctctgaacagacgcatccagctggttgaggaagagttgg 448
Query: 437 acagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctg 496
| | || ||||| || ||||| ||||| |||||||||| ||||| || || ||||| |
Sbjct: 449 atcgtgcccaggagcgtctggcaacagctttgcagaagctggaggaagctgagaaggcag 508
Query: 497 cagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggaga 556
|||||||||| |||||||| ||||| || || || | || ||| |||||||| || |
Sbjct: 509 cagatgagagtgagagaggcatgaaagtcattgagagtcgagcccaaaaagatgaagaaa 568
Query: 557 agatggagattcaggagatgcagctcanagaggccaagcacattgccgaggaggccgacc 616
| ||||| ||||||||||| || || | |||||| ||||||||||| || || |||||||
Sbjct: 569 aaatggaaattcaggagatccaactgaaagaggcaaagcacattgctgaagatgccgacc 628
Query: 617 gcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcag 676
||||||| || ||||| || |||||| |||||||| | ||| |||| ||||| | ||||
Sbjct: 629 gcaaatatgaagaggtggcccgtaagctggtcatcattgagagcgacctggaacgtgcag 688
Query: 677 aggagcg 683
|||||||
Sbjct: 689 aggagcg 695
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Sep 26, 2003 8:02 PM
Number of letters in database: 258,717,139
Number of sequences in database: 249,856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,853
Number of Sequences: 249856
Number of extensions: 154853
Number of successful extensions: 14781
Number of sequences better than 10.0: 142
length of query: 791
length of database: 258,717,139
effective HSP length: 19
effective length of query: 772
effective length of database: 253,969,875
effective search space: 196064743500
effective search space used: 196064743500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)