>20040204C-000261 (20040204C-000261) 20040204C-000261 ACTTTCCAGC AGCTGCGGCC AGCGGTGCCG ACGTCAGGCC CTCCCCCAGC GGTGCTGACG TCGACGGCCG GGCAGGGTGA CCTCATCGCC CCGACGGCGG CCCTGCCGGG GGCGGGGAGA GGCAGGGGCG GCCCCCCGGC GTAGGAAAAG GCTCGGGGGC CGGGGCGCGG CTGCTGCAGC TCTTGCAAGA GCAGAGCCGA GCCGAGCGCC CGCCGCTGCC CGCCGCCCGC TGCGTGCGCC TCCGCGCCAT GGCTGGCCTC AACTCCCTGG AGGCGGTGAA ACGCAAGATC CAGGCCCTGC AGCAGCAGGC GGACGAGGCA GAGGATCGCG CGCAGGGCCT GCAGCGGGAG CTGGACGGCG AGCGCGAGCG GCGGGAGAAA GCCGAAGGGG ATGTAGCAGC TCTCAATCGG CGCATCCAAC TCGTTGAGGA GGAGTTGGAC AGGGCTCAGG AACGACTGGC CACAGCCCTG CAGAAGCTTG AGGAGGCAGA AAAGGCTGCA GATGAGAGCG AGAGAGGAAT GAAGGTGATA GAAAACCGGG CCATGAAAGA TGAGGAGAAG ATGGAGATTC AGGAGATGCA GCTCAAAGAG GCCAAGCACA TTGCCGAGGA GGCCGACCGC AAATACGAGG AGGTAGCTCG TAAGTTGGTC ATCCTGGAGG GCGAGCTGGA GAGGGCAGAG GAGCGTGCCG AGGTGTCTGA ACTAAAATGT GGTGACCTGG AAGAAGAACT CAAGAATGTC ACCAACAACC TGAAGTCGCT AGAGGCTGCA TCTGAAAAGT ATTCTGAAAA GGAGGATAAA TATGAAGAAG AGATTAAACT TCTGTCTGAC AAACTGAAAG AGGCTGAGAC CCGTGCTGAA TTTGCAGAGA GAACAGTTGC AAAACTGGAA AAGACCATCG ATGACCTGGA AGAAAAACTT GCCCAGGCCA AAGAAGAGAA CGTGGGCTTA CATCAGACAC TGGATCAGAC ACTAAACGAA CTAAACTGTA TATAACCAAA ACAGAAGAGT CTCGTTCCAT CAGAAACTCC AGAGCTACGT GTTTTTCTCT TCTCTTGTAA GAAGTTTCTT TTGTTATTGC CTCTTTGCTT TGCTGGAAAT GTCAAGCAAA TTATGAATAC GTGACCAAAT ATTTTGTATC AAAAAAGCTT TGAACACCAG TTAAATCTAT TCCTCCTTTT TTTCAGGTGG CACCAGCTTT
Query= 20040204C-000261 (20040204C-000261) 20040204C-000261
(1200 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA li... 1715 0.0
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 1388 0.0
Alignment gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4 (LOC285... 1154 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 846 0.0
Alignment gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4 (LOC37... 492 e-137
Alignment gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens... 293 1e-77
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRN... 244 9e-63
Alignment gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRN... 224 8e-57
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA... 200 1e-49
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 194 7e-48
>gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010001C12
5', mRNA sequence /clone=SPL010001C12 /clone_end=5'
/gb=BP157632 /gi=40407105 /ug=Ssc.12963 /len=938
Length = 938
Score = 1715 bits (865), Expect = 0.0
Identities = 873/876 (99%)
Strand = Plus / Plus
Query: 249 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 122
Query: 309 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 182
Query: 369 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 242
Query: 429 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 302
Query: 489 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 362
Query: 549 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 422
Query: 609 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 668
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 423 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcattctggagggcgagctg 482
Query: 669 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 542
Query: 729 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 602
Query: 789 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 662
Query: 849 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 722
Query: 909 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 782
Query: 969 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 842
Query: 1029 ccagagctacgtgtttttctcttctcttgtaagaagtttcttttgttattgcctctttgc 1088
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 843 ccagagctacgtgtttttctcttctcttgntagaagtttcttttgttattgcctctttgc 902
Query: 1089 tttgctggaaatgtcaagcaaattatgaatacgtga 1124
||||||||||||||||||||||||||||||||||||
Sbjct: 903 tttgctggaaatgtcaagcaaattatgaatacgtga 938
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 1388 bits (700), Expect = 0.0
Identities = 869/923 (94%), Gaps = 3/923 (0%)
Strand = Plus / Plus
Query: 249 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 308
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 309 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 368
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 369 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 428
||||| |||||||| ||||| ||||| || || ||||| || |||||||| |||||||||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtggccgccctcaaccgacgcatccagctcgttgag 230
Query: 429 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 488
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 231 gaggagttggacagggctcaggaacgactggccacggccctgcagaagctggaggaggca 290
Query: 489 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 548
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gaaaaagctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaag 350
Query: 549 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 351 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaa 410
Query: 609 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 668
||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 411 gaggctgaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctg 470
Query: 669 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 728
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagagggcagaggagcgtgcggaggtgtctgaactaaaatgtggtgacctggaagaagaa 530
Query: 729 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 788
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||||
Sbjct: 531 ctcaagaatgttactaacaatctgaaatctctggaggctgcatctgaaaagtattctgaa 590
Query: 789 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 848
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaggaggacaaatatgaagaagaaattaaacttctgtctgacaaactgaaagaggctgag 650
Query: 849 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 908
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 651 acccgtgctgaatttgcagagagaacggttgcaaaactggaaaagacaattgatgacctg 710
Query: 909 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 968
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaagagaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 770
Query: 969 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 1028
|||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 771 acactaaacgaacttaactgtatataagcaaaacagaagagtcttgttccaacagaaact 830
Query: 1029 ccagagctacgt--gtttttctcttctcttgtaagaagtttcttttgttattgcc-tctt 1085
| ||||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 831 ctggagctccgtgggtctttctcttctcttgtaagaagttccttttgttattgccatctt 890
Query: 1086 tgctttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcaaaaa 1145
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct: 891 cgctttgctggaaatgtcaagcaaattatgaatacatgaccaaatattttgtatcggaga 950
Query: 1146 agctttgaacaccagttaaatct 1168
|||||||| ||||||||||||||
Sbjct: 951 agctttgagcaccagttaaatct 973
>gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4 (LOC285321),
mRNA /cds=(1,744) /gb=XM_208313 /gi=37550021
/ug=Hs.449194 /len=1349
Length = 1349
Score = 1154 bits (582), Expect = 0.0
Identities = 840/923 (91%), Gaps = 6/923 (0%)
Strand = Plus / Plus
Query: 249 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 308
||||| ||||||| || ||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct: 1 atggccggcctcagctacctggaggcagtgaaacgccagatctaggccctgcagcagcag 60
Query: 309 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 368
||||||||||| | || ||| |||||||||||||||||||||| ||| ||| | |||
Sbjct: 61 gcggacgaggcgtaagaccgc---cagggcctgcagcgggagctgggcggtgagtgtgag 117
Query: 369 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 428
||||| |||||||| |||| ||||| || || ||||| || |||||||| |||||||||
Sbjct: 118 cggcgcgagaaagctaaaggtgatgtggccgccctcaaccgacgcatccagctcgttgag 177
Query: 429 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 488
||| |||||||||||||||||||| |||||||||| |||| ||||||||| |||||||||
Sbjct: 178 gagaagttggacagggctcaggaaagactggccacggccccgcagaagctggaggaggca 237
Query: 489 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 548
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaaaagctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaag 297
Query: 549 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 608
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 298 gatgaggagaagatggaaattcaggagctgcagctcaaagaggccaagcacattgcggaa 357
Query: 609 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 668
||||| |||||||||||| |||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 358 gaggctgaccgcaaatactgggaggtagctcgtaagctggtcttcctggagggtgagctg 417
Query: 669 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 728
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 418 gagagggcagaggagcgtgtggaggtgtctgaactaaaatgtggtgaccttgaagaagaa 477
Query: 729 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 788
||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||||||
Sbjct: 478 ctcaagaatgttactaacaatctgaaatctctggaggctgcgtctgaaaagtattctgaa 537
Query: 789 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 848
|||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 538 aaggaggacaaatgtgaagaagaaattaaacttctgtgtgacaaactgaaagaggctgag 597
Query: 849 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 908
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 598 acccgtgctgaatttgcagagagaacggttgcaaaactggaaaagacaattgatgacctg 657
Query: 909 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 968
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaagagaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 717
Query: 969 acactaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaact 1028
||||||||||| || |||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 718 acactaaacgagcttaactgtatataagcaaaacagaagagtcttgttccaacagaaact 777
Query: 1029 ccagagctacgt--gtttttctcttctcttgtaagaagtttcttttgttattgcc-tctt 1085
|| ||||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 778 ccggagctccgtgggtctttctcttctcttgtaagaagttccttttgttattgccatctt 837
Query: 1086 tgctttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcaaaaa 1145
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct: 838 cgctttgctggaaatgtcaagcaaattatgaatacatgaccaaatattttgtattggaga 897
Query: 1146 agctttgaacaccagttaaatct 1168
|||||||| ||| ||||||||||
Sbjct: 898 agctttgagcacgagttaaatct 920
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
IMAGE:5345587), with apparent retained intron
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 846 bits (427), Expect = 0.0
Identities = 667/747 (89%)
Strand = Plus / Plus
Query: 249 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 308
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 309 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 368
|| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 369 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 428
||||| |||||||| ||||| |||| ||| |||||||| || ||||||||||| | |||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaactgctggag 217
Query: 429 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 488
||||| ||||| |||||||||| | |||||||||||||||||||| || || ||||||
Sbjct: 218 gaggaactggaccgggctcaggagcagctggccacagccctgcagaatctggaagaggca 277
Query: 489 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 548
|| |||||||| |||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 278 gagaaggctgctgatgagagtgagagaggcatgaaggtaatagagaaccgagccatgaaa 337
Query: 549 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 608
|||||||| ||||||||||| | |||||||||||||||||| ||||||||||| | ||
Sbjct: 338 gatgaggaaaagatggagatcctggagatgcagctcaaagaagccaagcacatcactgat 397
Query: 609 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 668
|| ||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 398 gaagccgaccgcaagtatgaggaggttgctcgtaagttggtcatcctggagggtgagctg 457
Query: 669 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 728
| || ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 458 aaaagagcagaggagcgggcggaggtatctgaactaaagtgtggtgacctggaagaagag 517
Query: 729 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 788
||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||||||
Sbjct: 518 ctcaagaatgtaactaacaatctgaaatcactggaggctgcttctgaaaagtattctgaa 577
Query: 789 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 848
||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||||
Sbjct: 578 aaggaggataaatatgaagaagaaatcaagcttctgtctgacaagctgaaggaggctgag 637
Query: 849 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 908
||||| ||||| |||||||| || |||||| | |||||||| ||||| ||||||||||||
Sbjct: 638 acccgagctgagtttgcagaaaggacagtttctaaactggagaagacaatcgatgacctg 697
Query: 909 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 968
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 698 gaagaaaaacttgcccaggccaaagaagagaatgtgggcttacatcagacactggaccag 757
Query: 969 acactaaacgaactaaactgtatataa 995
|||||||||||||| ||||||||||||
Sbjct: 758 acactaaacgaacttaactgtatataa 784
Score = 61.9 bits (31), Expect = 7e-08
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1090 ttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcaaaaaagct 1149
|||| ||||||| |||||| || |||||| | |||||||||||||||| | | | |||||
Sbjct: 886 ttgcaggaaatgccaagcagataatgaattcatgaccaaatattttgtgttagacaagct 945
Query: 1150 ttgaacaccagttaa 1164
|||| ||||||||||
Sbjct: 946 ttgagcaccagttaa 960
>gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4
(LOC375670), mRNA /cds=(1,648) /gb=XM_351784
/gi=37556017 /ug=Hs.447786 /len=648
Length = 648
Score = 492 bits (248), Expect = e-137
Identities = 348/379 (91%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 283 gcaagatccaggccc-tgcagcagcaggcggacgaggcagaggatcgcgcgcagggcctg 341
||||||||||||||| ||||| |||||||||||||||| || || ||||| ||||||||
Sbjct: 3 gcaagatccaggcccctgcagtagcaggcggacgaggcggaagaccgcgc--agggcctg 60
Query: 342 cagcgggagctggacggcgagcgcgagcggcgggagaaagccgaaggggatgtagcagct 401
|||||||||||||||||| |||||||| |||| |||||||| ||||| ||||| || |
Sbjct: 61 cagcgggagctggacggcaagcgcgagtggcgcgagaaagctgaaggtgatgtggccacc 120
Query: 402 ctcaatcggcgcatccaactcgttgaggaggagttggacagggctcaggaacgactggcc 461
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcaaccgacgcatccagctcgttgaggaggagttggacagggctcaggaacgactggcc 180
Query: 462 acagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatg 521
||||||||||||||||| |||||||||||||| | |||||||||||| || |||||||||
Sbjct: 181 acagccctgcagaagctggaggaggcagaaaaagttgcagatgagagtgaaagaggaatg 240
Query: 522 aaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcag 581
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 241 aaggtgatagaaaaccgggccatgaaggatgaggagaagatggagattcaggagatgcag 300
Query: 582 ctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgt 641
||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||||
Sbjct: 301 ctcaaagaggccaagcacattgcggaaaaggctgaccgcaaatacgagaaggtagctcgt 360
Query: 642 aagttggtcatcctggagg 660
||| |||||||||||||||
Sbjct: 361 aagctggtcatcctggagg 379
Score = 424 bits (214), Expect = e-117
Identities = 256/270 (94%)
Strand = Plus / Plus
Query: 726 gaactcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattct 785
|||||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||||
Sbjct: 379 gaactcaagaatgttactaacaatctgaaatcgctggaagctgcatctgaaaagtattct 438
Query: 786 gaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggct 845
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 439 gaaaaggaggacaaatatgaagaagaaattaaacttctgtctgacaaagtgaaagaggct 498
Query: 846 gagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgac 905
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 499 gagacccgtgctgaatttgcagagagaacggttgcaaaactggaaaagacaattgatgac 558
Query: 906 ctggaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggat 965
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctggaagagaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggat 618
Query: 966 cagacactaaacgaactaaactgtatataa 995
||||||||||||||||| ||||||||||||
Sbjct: 619 cagacactaaacgaacttaactgtatataa 648
>gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens
cDNA, mRNA sequence /gb=BE770853 /gi=10224511
/ug=Hs.478600 /len=396
Length = 396
Score = 293 bits (148), Expect = 1e-77
Identities = 169/176 (96%)
Strand = Plus / Minus
Query: 495 gctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgag 554
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 182 gctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgag 123
Query: 555 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggcc 614
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 122 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggct 63
Query: 615 gaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctgga 670
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 62 gaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctgga 7
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(83,937) /gb=NM_024427 /gi=31560029 /ug=Mm.121878
/len=1703
Length = 1703
Score = 244 bits (123), Expect = 9e-63
Identities = 426/527 (80%)
Strand = Plus / Plus
Query: 411 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 470
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 471 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 530
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 413 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 472
Query: 531 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 590
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 473 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 532
Query: 591 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 650
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 533 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 592
Query: 651 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 710
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 593 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 652
Query: 711 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 770
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 653 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 712
Query: 771 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 830
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 713 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 772
Query: 831 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaa 890
|| ||||| |||||||| || || ||||| |||||||||||| |||| | ||| ||||
Sbjct: 773 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagtaaccaaattggag 832
Query: 891 aagaccatcgatgacctggaagaaaaacttgcccaggccaaagaaga 937
|| | ||| |||||| | ||||| ||| | ||||| |||||||||||
Sbjct: 833 aaaagcattgatgacttagaagagaaagtggcccatgccaaagaaga 879
>gnl|UG|Hs#S1728084 Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA
/cds=(119,973) /gb=NM_003289 /gi=4507648 /ug=Hs.300772
/len=1044
Length = 1044
Score = 224 bits (113), Expect = 8e-57
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 423 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 482
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 401 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 460
Query: 483 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 542
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 461 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 520
Query: 543 atgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacatt 602
||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct: 521 atgaaggatgaggagaagatggaactgcaggagatgcagctgaaggaggccaagcacatc 580
Query: 603 gccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggc 662
|| ||||| | ||||||||||| || ||||| || | ||| |||| |||||||| ||
Sbjct: 581 gctgaggattcagaccgcaaatatgaagaggtggccaggaagctggtgatcctggaagga 640
Query: 663 gagctggag 671
|||||||||
Sbjct: 641 gagctggag 649
Score = 54.0 bits (27), Expect = 2e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 795 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 854
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 773 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 832
Query: 855 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 913
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 833 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 891
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 200 bits (101), Expect = 1e-49
Identities = 221/261 (84%)
Strand = Plus / Plus
Query: 411 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 470
||||| || ||||| |||||||||||||| |||| ||||| || ||||| |||||| ||
Sbjct: 305 cgcattcagctcgtagaggaggagttggatcgggcacaggagcgcctggctacagccttg 364
Query: 471 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 530
|| ||||| |||||||| || || || || |||||||||||||||||||||||||| ||
Sbjct: 365 caaaagctggaggaggctgagaaagccgcggatgagagcgagagaggaatgaaggtcatt 424
Query: 531 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 590
||||||||||||||||| |||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 425 gaaaaccgggccatgaaggatgaggaaaagatggagctgcaggagatgcagctgaaggaa 484
Query: 591 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 650
||||||||||| || ||||| | ||||||||||| |||||||| || | ||| ||||
Sbjct: 485 gccaagcacatcgctgaggactcagaccgcaaatatgaggaggtggccaggaagctggtg 544
Query: 651 atcctggagggcgagctggag 671
|||||||| || |||||||||
Sbjct: 545 atcctggaaggggagctggag 565
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 792 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 851
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 852 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 911
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 912 ga 913
||
Sbjct: 806 ga 807
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 194 bits (98), Expect = 7e-48
Identities = 209/246 (84%)
Strand = Plus / Plus
Query: 426 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 485
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 394 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 453
Query: 486 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 545
|| | ||||| || |||||||| || |||||||||||||| || |||||||| ||||||
Sbjct: 454 gccgggaaggcagctgatgagagtgaaagaggaatgaaggtcattgaaaaccgagccatg 513
Query: 546 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 605
|| |||||||| ||||||||| | |||||||||||||| || |||||||||||||| ||
Sbjct: 514 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaggccaagcacatcgct 573
Query: 606 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 665
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 574 gaggattcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggagag 633
Query: 666 ctggag 671
||||||
Sbjct: 634 ctggag 639
Score = 60.0 bits (30), Expect = 3e-07
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 792 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 851
||||||||||||||||| ||||| ||||| ||| || || || || ||||||||||||
Sbjct: 760 gaggataaatatgaagaggagatcaaactgctggaagagaagctaaaggaggctgagacc 819
Query: 852 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 911
|| || || ||||| || || | || ||||| |||| || ||||||||||||||||||
Sbjct: 820 cgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcgatgacctggaa 879
Query: 912 ga 913
||
Sbjct: 880 ga 881
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 237,549
Number of Sequences: 238354
Number of extensions: 237549
Number of successful extensions: 20088
Number of sequences better than 10.0: 73
length of query: 1200
length of database: 272,110,533
effective HSP length: 19
effective length of query: 1181
effective length of database: 267,581,807
effective search space: 316014114067
effective search space used: 316014114067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)