>20040204C-000262 (20040204C-000262) 20040204C-000262 ACAGCAGCGA GTGGCGGCTA GCCCAGCCGG CCTGGGCTTG GGCCTCCTCC AGACTCGCCC CGCAGCAGGG CGGTGCACCC CAGGAGCCTA TAAGGGCTTC TCCTCCACCC GGCCGGCTCA CTCGACACCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGTTGAGCGA GAAGAAAGCC TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA AAACTTGCCC AGGCCAAAGA AAAGAACGTG GGCTTACATC AAACACTGGA TCAGACACTA AACGAACTAA ACTGTATATA ACCAAAACAG AAAAAGTCTC GTTCCATCAA AAACTCCCAA GCTACGTTGT TTTTCTCTTC TCTTGGTAGA AGTTTCTTTT GTTTTTTGCC CCCTATGCTT TTGCCTGAAA CTGGAAATGT CAGCATTTAT AGATACGTGA ACCCAATATT TTTTTTGTTA TCAAAAAAAA ACTTTTTTAA ACCCCCCAAG TTTAAAAATT CTTTTTTTCC TTTTCCCTTT TTTTTTTTTC CAAGGGTGGG CCCCCCCCCC CCCTTTTTTT TTTCTCCCAC CCCTTCTTTT TTTTTTTTTT T
Query= 20040204C-000262 (20040204C-000262) 20040204C-000262
(1331 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA li... 1289 0.0
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 973 0.0
Alignment gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4 (LOC285... 868 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 658 0.0
Alignment gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4 (LOC37... 408 e-112
Alignment gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens... 293 1e-77
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 287 7e-76
Alignment gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA... 250 2e-64
Alignment gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRN... 240 2e-61
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 236 2e-60
>gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010001C12
5', mRNA sequence /clone=SPL010001C12 /clone_end=5'
/gb=BP157632 /gi=40407105 /ug=Ssc.12963 /len=938
Length = 938
Score = 1289 bits (650), Expect = 0.0
Identities = 687/697 (98%), Gaps = 2/697 (0%)
Strand = Plus / Plus
Query: 427 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 254
Query: 487 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 314
Query: 547 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaag 374
Query: 607 atggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgc 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgc 434
Query: 667 aaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagag 726
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 435 aaatacgaggaggtagctcgtaagttggtcattctggagggcgagctggagagggcagag 494
Query: 727 gagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtc 554
Query: 787 accaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaa 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 accaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaa 614
Query: 847 tatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaa 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaa 674
Query: 907 tttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaactt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaactt 734
Query: 967 gcccaggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaa 1026
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 735 gcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaa 794
Query: 1027 ctaaactgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacg 1086
|||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 795 ctaaactgtatataaccaaaacag-aagagtctcgttccatcagaaactccagagctacg 853
Query: 1087 ttgtttttctcttctcttggtagaagtttcttttgtt 1123
|||||||||||||||||| |||||||||||||||||
Sbjct: 854 -tgtttttctcttctcttgntagaagtttcttttgtt 889
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 973 bits (491), Expect = 0.0
Identities = 646/695 (92%), Gaps = 2/695 (0%)
Strand = Plus / Plus
Query: 430 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 489
||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 186 gaaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggaggagttggacagg 245
Query: 490 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 549
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct: 246 gctcaggaacgactggccacggccctgcagaagctggaggaggcagaaaaagctgcagat 305
Query: 550 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 609
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 306 gagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatg 365
Query: 610 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 669
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 366 gagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaa 425
Query: 670 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 729
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 426 tacgaggaggtagctcgtaagctggtcatcctggagggtgagctggagagggcagaggag 485
Query: 730 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 789
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 486 cgtgcggaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgttact 545
Query: 790 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 849
||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 aacaatctgaaatctctggaggctgcatctgaaaagtattctgaaaaggaggacaaatat 605
Query: 850 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 909
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaagaagaaattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 665
Query: 910 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgcc 969
||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 666 gcagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgcc 725
Query: 970 caggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaacta 1029
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 726 caggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaactt 785
Query: 1030 aactgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacgt-t 1088
|||||||||||| |||||||| || ||||| |||||| || |||||| |||| |||
Sbjct: 786 aactgtatataagcaaaacag-aagagtcttgttccaacagaaactctggagctccgtgg 844
Query: 1089 gtttttctcttctcttggtagaagtttcttttgtt 1123
|| |||||||||||||| ||||||| ||||||||
Sbjct: 845 gtctttctcttctcttgtaagaagttccttttgtt 879
>gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4 (LOC285321),
mRNA /cds=(1,744) /gb=XM_208313 /gi=37550021
/ug=Hs.449194 /len=1349
Length = 1349
Score = 868 bits (438), Expect = 0.0
Identities = 632/694 (91%), Gaps = 2/694 (0%)
Strand = Plus / Plus
Query: 431 aaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacaggg 490
|||| ||||| || || ||||| || |||||||| |||||||||||| ||||||||||||
Sbjct: 134 aaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggagaagttggacaggg 193
Query: 491 ctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatg 550
|||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct: 194 ctcaggaaagactggccacggccccgcagaagctggaggaggcagaaaaagctgcagatg 253
Query: 551 agagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatgg 610
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 254 agagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatgg 313
Query: 611 agattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaat 670
| ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 314 aaattcaggagctgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaat 373
Query: 671 acgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagc 730
|| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 374 actgggaggtagctcgtaagctggtcttcctggagggtgagctggagagggcagaggagc 433
Query: 731 gtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacca 790
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 434 gtgtggaggtgtctgaactaaaatgtggtgaccttgaagaagaactcaagaatgttacta 493
Query: 791 acaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatatg 850
|||| ||||| || || |||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 494 acaatctgaaatctctggaggctgcgtctgaaaagtattctgaaaaggaggacaaatgtg 553
Query: 851 aagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaatttg 910
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aagaagaaattaaacttctgtgtgacaaactgaaagaggctgagacccgtgctgaatttg 613
Query: 911 cagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgccc 970
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 614 cagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgccc 673
Query: 971 aggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaactaa 1030
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct: 674 aggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgagctta 733
Query: 1031 actgtatataaccaaaacagaaaaagtctcgttccatcaaaaactcccaagctacgt-tg 1089
||||||||||| |||||||| || ||||| |||||| || ||||||| |||| ||| |
Sbjct: 734 actgtatataagcaaaacag-aagagtcttgttccaacagaaactccggagctccgtggg 792
Query: 1090 tttttctcttctcttggtagaagtttcttttgtt 1123
| |||||||||||||| ||||||| ||||||||
Sbjct: 793 tctttctcttctcttgtaagaagttccttttgtt 826
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
IMAGE:5345587), with apparent retained intron
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 658 bits (332), Expect = 0.0
Identities = 542/612 (88%)
Strand = Plus / Plus
Query: 430 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 489
||||| |||| ||| |||||||| || ||||||||||| | |||||||| ||||| ||
Sbjct: 173 gaaggagatgcagccgctctcaaccgccgcatccaactgctggaggaggaactggaccgg 232
Query: 490 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 549
|||||||| | |||||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 233 gctcaggagcagctggccacagccctgcagaatctggaagaggcagagaaggctgctgat 292
Query: 550 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 609
||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 293 gagagtgagagaggcatgaaggtaatagagaaccgagccatgaaagatgaggaaaagatg 352
Query: 610 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 669
||||| | |||||||||||||||||| ||||||||||| | || || |||||||||||
Sbjct: 353 gagatcctggagatgcagctcaaagaagccaagcacatcactgatgaagccgaccgcaag 412
Query: 670 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 729
|| |||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct: 413 tatgaggaggttgctcgtaagttggtcatcctggagggtgagctgaaaagagcagaggag 472
Query: 730 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 789
|| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 473 cgggcggaggtatctgaactaaagtgtggtgacctggaagaagagctcaagaatgtaact 532
Query: 790 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 849
||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 aacaatctgaaatcactggaggctgcttctgaaaagtattctgaaaaggaggataaatat 592
Query: 850 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 909
|||||||| || || |||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 593 gaagaagaaatcaagcttctgtctgacaagctgaaggaggctgagacccgagctgagttt 652
Query: 910 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgcc 969
||||| || |||||| | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 653 gcagaaaggacagtttctaaactggagaagacaatcgatgacctggaagaaaaacttgcc 712
Query: 970 caggccaaagaaaagaacgtgggcttacatcaaacactggatcagacactaaacgaacta 1029
|||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct: 713 caggccaaagaagagaatgtgggcttacatcagacactggaccagacactaaacgaactt 772
Query: 1030 aactgtatataa 1041
||||||||||||
Sbjct: 773 aactgtatataa 784
>gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4
(LOC375670), mRNA /cds=(1,648) /gb=XM_351784 /gi=37556017
/ug=Hs.447786 /len=648
Length = 648
Score = 408 bits (206), Expect = e-112
Identities = 254/270 (94%)
Strand = Plus / Plus
Query: 772 gaactcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattct 831
|||||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||||
Sbjct: 379 gaactcaagaatgttactaacaatctgaaatcgctggaagctgcatctgaaaagtattct 438
Query: 832 gaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggct 891
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 439 gaaaaggaggacaaatatgaagaagaaattaaacttctgtctgacaaagtgaaagaggct 498
Query: 892 gagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgac 951
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 499 gagacccgtgctgaatttgcagagagaacggttgcaaaactggaaaagacaattgatgac 558
Query: 952 ctggaagaaaaacttgcccaggccaaagaaaagaacgtgggcttacatcaaacactggat 1011
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 559 ctggaagagaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggat 618
Query: 1012 cagacactaaacgaactaaactgtatataa 1041
||||||||||||||||| ||||||||||||
Sbjct: 619 cagacactaaacgaacttaactgtatataa 648
Score = 394 bits (199), Expect = e-108
Identities = 244/259 (94%)
Strand = Plus / Plus
Query: 448 ctcaatcggcgcatccaactcgttgaggaggagttggacagggctcaggaacgactggcc 507
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcaaccgacgcatccagctcgttgaggaggagttggacagggctcaggaacgactggcc 180
Query: 508 acagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatg 567
||||||||||||||||| |||||||||||||| | |||||||||||| || |||||||||
Sbjct: 181 acagccctgcagaagctggaggaggcagaaaaagttgcagatgagagtgaaagaggaatg 240
Query: 568 aaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcag 627
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 241 aaggtgatagaaaaccgggccatgaaggatgaggagaagatggagattcaggagatgcag 300
Query: 628 ctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgt 687
||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||||
Sbjct: 301 ctcaaagaggccaagcacattgcggaaaaggctgaccgcaaatacgagaaggtagctcgt 360
Query: 688 aagttggtcatcctggagg 706
||| |||||||||||||||
Sbjct: 361 aagctggtcatcctggagg 379
>gnl|UG|Hs#S2388231 RC0-FT0071-010600-031-h01 FT0071 Homo sapiens
cDNA, mRNA sequence /gb=BE770853 /gi=10224511
/ug=Hs.478600 /len=396
Length = 396
Score = 293 bits (148), Expect = 1e-77
Identities = 169/176 (96%)
Strand = Plus / Minus
Query: 541 gctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgag 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 182 gctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgag 123
Query: 601 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggcc 660
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 122 gagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggct 63
Query: 661 gaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctgga 716
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 62 gaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctgga 7
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 287 bits (145), Expect = 7e-76
Identities = 436/533 (81%)
Strand = Plus / Plus
Query: 185 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 244
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 107 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 166
Query: 245 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 304
|||| || |||||||||||| | || ||||| ||||| || ||||||||| |||
Sbjct: 167 accgtgctgagcaggcggaggctgacaagaagcaggctgaagaccgctgcaagcagctgg 226
Query: 305 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 364
||||||||| | | |||||||||||||||||| ||||| ||||||||| |||| || |
Sbjct: 227 aggaggagcagcaggccctccagaagaagctgaaagggacggaggatgaggtggaaaagt 286
Query: 365 actccgagaacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaagcctccg 424
| ||||| ||||||| || ||||| || |||||| | || ||||| ||| |||
Sbjct: 287 attccgaatcagtgaaggatgcccaggagaaactggagcaggctgaaaagaaggccaccg 346
Query: 425 acgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttgg 484
||||||| | ||||| || | || || || ||||| || || || ||||||||| |||
Sbjct: 347 acgccgaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagctgg 406
Query: 485 acagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctg 544
|| |||| ||||| || ||||||||||||||||| ||||| |||||||| | ||||| |
Sbjct: 407 accgggcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgggaaggcag 466
Query: 545 cagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggaga 604
| |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| |
Sbjct: 467 ctgatgagagtgaaagaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaa 526
Query: 605 agatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgacc 664
|||||||| | |||||||||||||| || |||||||||||||| || ||||| | ||||
Sbjct: 527 agatggagctgcaggagatgcagctgaaggaggccaagcacatcgctgaggattcagacc 586
Query: 665 gcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggag 717
||||||| |||||||| || | ||| |||| |||||||| || |||||||||
Sbjct: 587 gcaaatatgaggaggtggccaggaagctggtgatcctggaaggagagctggag 639
Score = 60.0 bits (30), Expect = 3e-07
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 838 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 897
||||||||||||||||| ||||| ||||| ||| || || || || ||||||||||||
Sbjct: 760 gaggataaatatgaagaggagatcaaactgctggaagagaagctaaaggaggctgagacc 819
Query: 898 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 957
|| || || ||||| || || | || ||||| |||| || ||||||||||||||||||
Sbjct: 820 cgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcgatgacctggaa 879
Query: 958 ga 959
||
Sbjct: 880 ga 881
>gnl|UG|Mm#S8039736 Mus musculus tropomyosin 2, beta (Tpm2), mRNA
/cds=(35,889) /gb=NM_009416 /gi=11875202 /ug=Mm.646
/len=2097
Length = 2097
Score = 250 bits (126), Expect = 2e-64
Identities = 351/426 (82%)
Strand = Plus / Plus
Query: 292 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 351
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 352 gagctggacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcgag 411
||| |||| || || |||||| | ||||||| || ||||| || |||||| | |||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 412 aagaaagcctccgacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgtt 471
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 472 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 531
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 532 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 591
|| || || || || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 380 gctgagaaagccgcggatgagagcgagagaggaatgaaggtcattgaaaaccgggccatg 439
Query: 592 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 651
|| |||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||
Sbjct: 440 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaagccaagcacatcgct 499
Query: 652 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 711
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 500 gaggactcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggggag 559
Query: 712 ctggag 717
||||||
Sbjct: 560 ctggag 565
Score = 117 bits (59), Expect = 2e-24
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 182 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 241
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 242 tcgaccgggccgagcaggc 260
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 838 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 897
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 898 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 957
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 958 ga 959
||
Sbjct: 806 ga 807
>gnl|UG|Mm#S9104157 Mus musculus tropomyosin 1, alpha (Tpm1), mRNA
/cds=(83,937) /gb=NM_024427 /gi=31560029 /ug=Mm.121878
/len=1703
Length = 1703
Score = 240 bits (121), Expect = 2e-61
Identities = 424/525 (80%)
Strand = Plus / Plus
Query: 457 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 516
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 517 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 576
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 413 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 472
Query: 577 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 636
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 473 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 532
Query: 637 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 696
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 533 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 592
Query: 697 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 756
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 593 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 652
Query: 757 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 816
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 653 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 712
Query: 817 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 876
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 713 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 772
Query: 877 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaa 936
|| ||||| |||||||| || || ||||| |||||||||||| |||| | ||| ||||
Sbjct: 773 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagtaaccaaattggag 832
Query: 937 aagaccatcgatgacctggaagaaaaacttgcccaggccaaagaa 981
|| | ||| |||||| | ||||| ||| | ||||| |||||||||
Sbjct: 833 aaaagcattgatgacttagaagagaaagtggcccatgccaaagaa 877
Score = 95.6 bits (48), Expect = 6e-18
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 185 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 244
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 245 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 304
| || || ||||| |||||| | |||||||| || || || || | |||||||| |||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaaggcggcggaagaccggagcaagcagctgg 200
Query: 305 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 364
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 201 aagatgagctggtgtcactgcaaaagaaactcaagggcactgaagatgaactggacaaat 260
Query: 365 actccgag 372
||||||||
Sbjct: 261 actccgag 268
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 236 bits (119), Expect = 2e-60
Identities = 410/507 (80%)
Strand = Plus / Plus
Query: 193 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 252
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 253 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 312
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 313 ctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaatactccgag 372
||| | || || |||||||| |||| || || ||||| ||||||||||| ||||||
Sbjct: 123 ctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatattccgag 182
Query: 373 aacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaagcctccgacgccgaa 432
|| || || || ||||| ||||||||| || ||||| || ||| |||| || |||
Sbjct: 183 gctctcaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgatgctgaa 242
Query: 433 ggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagggct 492
| |||||||| |||| || | ||||||||||| |||||||| ||| ||||| | ||
Sbjct: 243 gccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggaccgtgcc 302
Query: 493 caggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgag 552
||||| |||||||| ||||| | ||||| ||||||||||| || ||||| |||||||||
Sbjct: 303 caggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagcagatgag 362
Query: 553 agcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggag 612
|| |||||||| ||||| || || |||| ||| ||| || ||||||||||| |||||
Sbjct: 363 agtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaa 422
Query: 613 attcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatac 672
||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 423 attcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtat 482
Query: 673 gaggaggtagctcgtaagttggtcatc 699
|| ||||| || |||||| ||||||||
Sbjct: 483 gaagaggtggcccgtaagctggtcatc 509
Score = 54.0 bits (27), Expect = 2e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 835 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 894
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 895 acccgtgctgaatttgcagagag 917
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 297,378
Number of Sequences: 238354
Number of extensions: 297378
Number of successful extensions: 24806
Number of sequences better than 10.0: 78
length of query: 1331
length of database: 272,110,533
effective HSP length: 19
effective length of query: 1312
effective length of database: 267,581,807
effective search space: 351067330784
effective search space used: 351067330784
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)