Search to UniGene2 database
Query= 20040204C-001479 (20040204C-001479) 20040204C-001479
(1159 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18273062 BP169553 full-length enriched swine cDNA li... 1628 0.0
Alignment gnl|UG|Hs#S17642913 Homo sapiens ubiquitin-conjugating enzyme E2... 291 4e-77
Alignment gnl|UG|Bt#S14858772 693540 MARC 6BOV Bos taurus cDNA 3', mRNA se... 133 2e-29
Alignment gnl|UG|Mm#S8762442 Mus musculus ubiquitin-conjugating enzyme 8 (... 84 2e-14
Alignment gnl|UG|Mm#S9707353 Mus musculus ubiquitin-conjugating enzyme E2C... 40 0.25
Alignment gnl|UG|Hs#S1727033 Homo sapiens integrin, beta 1 (fibronectin re... 38 0.99
Alignment gnl|UG|Hs#S3219855 Homo sapiens lipidosin (BG1), mRNA /cds=(57,2... 38 0.99
Alignment gnl|UG|Hs#S4844947 Homo sapiens mRNA for KIAA1297 protein, parti... 38 0.99
Alignment gnl|UG|Mm#S10854513 Mus musculus adult male corpus striatum cDNA... 38 0.99
Alignment gnl|UG|Mm#S10851663 Mus musculus 0 day neonate kidney cDNA, RIKE... 38 0.99
>gnl|UG|Ssc#S18273062 BP169553 full-length enriched swine cDNA
library, adult uterus Sus scrofa cDNA clone UTR010026A05
5', mRNA sequence /clone=UTR010026A05 /clone_end=5'
/gb=BP169553 /gi=40419026 /ug=Ssc.2641 /len=833
Length = 833
Score = 1628 bits (821), Expect = 0.0
Identities = 830/833 (99%)
Strand = Plus / Plus
Query: 1 ggaaaagagctagagttccggggatccgagcccaccgcgccggggacggggcgggtcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaaaagagctagagttccggggatccgagcccaccgcgccggggacggggcgggtcctc 60
Query: 61 ccctccgtggccttctaggctctgccgaggcggtgggaagcagggccgcccagcccggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccctccgtggccttctaggctctgccgaggcggtgggaagcagggccgcccagcccggag 120
Query: 121 tccccgcgggtggagaggagcgtgggcggggctcccggaggtggggtccccggggcgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccccgcgggtggagaggagcgtgggcggggctcccggaggtggggtccccggggcgggg 180
Query: 181 agcgccgagtccgccggccggtgcacagtctcgctggagtccgacagagcccacactggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcgccgagtccgccggccggtgcacagtctcgctggagtccgacagagcccacactggt 240
Query: 241 cccgagatgacggcgagcaagcgggtggcaaaggagctggaggatcttcagaaggagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cccgagatgacggcgagcaagcgggtggcaaaggagctggaggatcttcagaaggagctt 300
Query: 301 cccaggtacctcgggaagctgttcagcgatgatgccaacgtgttggtgtggcacgcgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cccaggtacctcgggaagctgttcagcgatgatgccaacgtgttggtgtggcacgcgctc 360
Query: 361 ctcctgcctgagaaaccgccctacaacctcagggccttcaaccttcgcatcagcttcccg 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctcctgcctgaaaaaccgccctacaacctcagggccttcaaccttcgcatcagcttcccg 420
Query: 421 gaggagtacccattcaagcccccgacggtgacgtttacaactaggatctaccaccccaac 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 gaggagtacccattcaagcccccgacggtgacgtttacaaccaggatctaccaccccaac 480
Query: 481 gtggacagcgaaggccaggtgtgtctgcccatcatcagcaacgagaactggaagccctgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtggacagcgaaggccaggtgtgtctgcccatcatcagcaacgagaactggaagccctgc 540
Query: 541 accaagacctgccaagtcctggaggccctcaacgtgctggtgaatagaccagagccgggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accaagacctgccaagtcctggaggccctcaacgtgctggtgaatagaccagagccgggg 600
Query: 601 cagccccttcgggtggagctcgccgaccagctgacccaggacccggagctgttcaacagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagccccttcgggtggagctcgccgaccagctgacccaggacccggagctgttcaacagg 660
Query: 661 aaggccgaagagttcaccctccagttcggagtggaccggccctcctaactctgcccgtga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaggccgaagagttcaccctccagttcggagtggaccggccctcctaactctgcccgtga 720
Query: 721 cccgtctctgcaccagatcctctctgcgtgatggacggacataccgcacggatggggagc 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 721 cccgtctctgcaccagatcctctctgcgtgatggacggacatatcgcacggatggggagc 780
Query: 781 cagagcccctttgtgctcctgctcatttcttccaagttttcccttgtaggctg 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cagagcccctttgtgctcctgctcatttcttccaagttttcccttgtaggctg 833
>gnl|UG|Hs#S17642913 Homo sapiens ubiquitin-conjugating enzyme E2L 6
(UBE2L6), transcript variant 2, mRNA /cds=(304,567)
/gb=NM_198183 /gi=38157985 /ug=Hs.425777 /len=1269
Length = 1269
Score = 291 bits (147), Expect = 4e-77
Identities = 368/439 (83%), Gaps = 2/439 (0%)
Strand = Plus / Plus
Query: 274 gagctggaggatcttcagaaggagcttcccaggtacctcgggaagctgttcagcgatgat 333
||||||||||||||||||||| ||| |||| ||||| |||| |||| ||||||||||
Sbjct: 133 gagctggaggatcttcagaagaagcctcccccatacctgcggaacctgtccagcgatgat 192
Query: 334 gccaacgtgttggtgtggcacgcgctcctcctgcctgagaaaccgccctacaacctcagg 393
||||| || ||||||||||||| |||||||| || || |||| |||||| |||| |
Sbjct: 193 gccaatgtcctggtgtggcacgctctcctcctacccgaccaacctccctaccacctgaaa 252
Query: 394 gccttcaaccttcgcatcagcttcccggaggagtacccattcaagcccccgacggtgacg 453
||||||||||| ||||||||||||||| |||||| || |||||||| || | | | |
Sbjct: 253 gccttcaacctgcgcatcagcttcccgccggagtatccgttcaagcctcccatgatcaaa 312
Query: 454 tttacaactaggatctaccaccccaacgtggacagcgaa-ggccaggtgtgtctgcccat 512
|| ||||| | |||||||||||||||||||||| | ||| || ||| | || ||||||||
Sbjct: 313 ttcacaaccaagatctaccaccccaacgtggac-gagaacggacagatttgcctgcccat 371
Query: 513 catcagcaacgagaactggaagccctgcaccaagacctgccaagtcctggaggccctcaa 572
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 372 catcagcagtgagaactggaagccttgcaccaagacttgccaagtcctggaggccctcaa 431
Query: 573 cgtgctggtgaatagaccagagccggggcagccccttcgggtggagctcgccgaccagct 632
||||||||||||||||| | || ||||||| ||| |||| ||||| |||| |||
Sbjct: 432 tgtgctggtgaatagaccgaatatcagggagcccctgcggatggacctcgctgacctgct 491
Query: 633 gacccaggacccggagctgttcaacaggaaggccgaagagttcaccctccagttcggagt 692
||| ||| | ||||||||||||| | ||| ||||||||||||||||||| ||||||||
Sbjct: 492 gacacagaatccggagctgttcagaaagaatgccgaagagttcaccctccgattcggagt 551
Query: 693 ggaccggccctcctaactc 711
|||||||||||||||||||
Sbjct: 552 ggaccggccctcctaactc 570
>gnl|UG|Bt#S14858772 693540 MARC 6BOV Bos taurus cDNA 3', mRNA
sequence /clone_end=3' /gb=CB442733 /gi=29231048
/ug=Bt.16725 /len=664
Length = 664
Score = 133 bits (67), Expect = 2e-29
Identities = 118/135 (87%)
Strand = Plus / Minus
Query: 575 tgctggtgaatagaccagagccggggcagccccttcgggtggagctcgccgaccagctga 634
||||||||||| ||| |||||||| |||||| ||||| |||||||||| || |||||||
Sbjct: 660 tgctggtgaatcaaccggagccgggacagcccgttcggctggagctcgcggagcagctga 601
Query: 635 cccaggacccggagctgttcaacaggaaggccgaagagttcaccctccagttcggagtgg 694
| |||||||| |||||||| || || |||| ||||||||||||||||||| |||||||
Sbjct: 600 cacaggacccagagctgtttgaccagatggcccaagagttcaccctccagtttggagtgg 541
Query: 695 accggccctcctaac 709
|||||||||||||||
Sbjct: 540 accggccctcctaac 526
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1046 gttggtccatcgtagagactcaggcc 1071
||||||||||| ||||||||||||||
Sbjct: 241 gttggtccatcttagagactcaggcc 216
>gnl|UG|Mm#S8762442 Mus musculus ubiquitin-conjugating enzyme 8
(Ubce8), mRNA /cds=(68,526) /gb=NM_019949 /gi=9910601
/ug=Mm.38261 /len=1065
Length = 1065
Score = 83.8 bits (42), Expect = 2e-14
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 498 ggtgtgtctgcccatcatcagcaacgagaactggaagccctgcaccaagacctgccaagt 557
|||||| |||||| |||||||||| |||||||||||||| | ||||||| | | |||||
Sbjct: 316 ggtgtgcctgcccctcatcagcaatgagaactggaagccttacaccaagccttatcaagt 375
Query: 558 cctggaggccctcaacgtgctggtga 583
| ||||||||||||| ||||||||||
Sbjct: 376 cttggaggccctcaatgtgctggtga 401
Score = 69.9 bits (35), Expect = 3e-10
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 631 ctgacccaggacccggagctgttcaacaggaaggccgaagagttcaccctccagttcgga 690
||||| ||| |||||||| |||||| | |||||| |||||||||||||| | ||||||
Sbjct: 449 ctgactcagaacccggagatgttcaggaagaaggcagaagagttcacccttaaattcgga 508
Query: 691 gtggaccggccctcctaactctg 713
|||||||||||||| ||| ||||
Sbjct: 509 gtggaccggccctcttaattctg 531
>gnl|UG|Mm#S9707353 Mus musculus ubiquitin-conjugating enzyme E2C
(Ube2c), mRNA /cds=(53,592) /gb=NM_026785 /gi=21312887
/ug=Mm.89830 /len=932
Length = 932
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 468 ctaccaccccaacgtggaca 487
||||||||||||||||||||
Sbjct: 358 ctaccaccccaacgtggaca 377
>gnl|UG|Hs#S1727033 Homo sapiens integrin, beta 1 (fibronectin
receptor, beta polypeptide, antigen CD29 includes MDF2,
MSK12) (ITGB1), transcript variant 1A, mRNA
/cds=(127,2523) /gb=NM_002211 /gi=19743812 /ug=Hs.287797
/len=3700
Length = 3700
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 26 ccgagcccaccgcgccggg 44
|||||||||||||||||||
Sbjct: 86 ccgagcccaccgcgccggg 104
>gnl|UG|Hs#S3219855 Homo sapiens lipidosin (BG1), mRNA /cds=(57,2231)
/gb=NM_015162 /gi=27477104 /ug=Hs.277543 /len=2867
Length = 2867
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 505 ctgcccatcatcagcaacg 523
|||||||||||||||||||
Sbjct: 1827 ctgcccatcatcagcaacg 1845
>gnl|UG|Hs#S4844947 Homo sapiens mRNA for KIAA1297 protein, partial
cds. /cds=(1,6726) /gb=AB037718 /gi=7242948 /ug=Hs.80181
/len=6726
Length = 6726
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 148 ggggctcccggaggtgggg 166
|||||||||||||||||||
Sbjct: 3926 ggggctcccggaggtgggg 3908
>gnl|UG|Mm#S10854513 Mus musculus adult male corpus striatum cDNA,
RIKEN full-length enriched library, clone:C030038M18
product:unclassifiable, full insert sequence /gb=AK081269
/gi=26099802 /ug=Mm.256432 /len=2587
Length = 2587
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 422 aggagtacccattcaagcc 440
|||||||||||||||||||
Sbjct: 2015 aggagtacccattcaagcc 2033
>gnl|UG|Mm#S10851663 Mus musculus 0 day neonate kidney cDNA, RIKEN
full-length enriched library, clone:D630017L16
product:unknown EST, full insert sequence /gb=AK085372
/gi=26102661 /ug=Mm.151924 /len=2506
Length = 2506
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1006 ctcttctggactctgtgag 1024
|||||||||||||||||||
Sbjct: 522 ctcttctggactctgtgag 540
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 177,670
Number of Sequences: 238354
Number of extensions: 177670
Number of successful extensions: 14034
Number of sequences better than 10.0: 23
length of query: 1159
length of database: 272,110,533
effective HSP length: 19
effective length of query: 1140
effective length of database: 267,581,807
effective search space: 305043259980
effective search space used: 305043259980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)