>20040204C-002151 (20040204C-002151) 20040204C-002151 AGCAGCGTCA TGGCGCGCTT CTTCCGCGCG GGCCCGGGCT TACCCTTCCG AGAGGTGCTC TCGCGGGCAG TGTGGGGTCG TGCCGACAAT GGCGGCCTCA GCCCGAAGGT CGGAACCGGA GACGCAGGGT CCCTTACAAA GCGTGAGCCG TTCCTCTCCA AGAGTGAGTG GCAAAAGAAG CTGACTCCAG AGCAATTCCA CGTCACGAGA GAAAAAGGGA CAGAACCGCC TTTCAGTGGG ACCTACCTGA ATAACAAGGA AGCAGGAATG TATCACTGTG TGTGCTGTGA CAGCCCACTC TTCAGCTCTG AGAAAAAGTA CTGCTCTGGC ACTGGATGGC CTTCATTTTC TGAGGCTCAC GGCACATCTG GCTCTGATGA GAGTGACACA GGGATCCTGA GACGTGTGGA CACCTCGCTG GGAACAGCTC GCACGGAGGT TGTCTGCAAG CAGTGCGAAG CTCACCTTGG CCATGTGTTT CCTGATGGAC CTGGGCCTAC AGGTCAGAGG TTTTGCATCA ACAGTGTGGC ACTCAAGTTC AAACCAAGGA AACACTGACC ATCGCCAGGA GTCCCTTTCT CTTCCACCCT CTCATTTCCA AACTCGATTT TCATAATTTA TGCAAATGAC TAGTTTTATT AATGACCAAA CTAGGCTAAG CTTGCTGGCA TACCTTCTCT AATTCATTAC CTGGAGTCAG CTCCACCCTG GCTCTGGCTC TGGCTAGAAT TTCACGGAAT GACAGAGGGG CAGTCCTTTC CCTTAATCAA CATCTGTGGG CTTTGCCAGG ACCAGAGGGC ATGACTCTTT GGGGACATTA GGAGGCTGAT GGATAAGCCA AAGAACTCCT ATAAAACTAT GCTGAATTTT CCATTGCAGT CAAGTGGTTC ACAGACATGT ATAGGTGAGA GG
Query= 20040204C-002151 (20040204C-002151) 20040204C-002151
(912 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18292191 BP143916 full-length enriched swine cDNA li... 1524 0.0
Alignment gnl|UG|Hs#S1824499 Homo sapiens pilin-like transcription factor ... 480 e-134
Alignment gnl|UG|Mm#S9707197 Mus musculus RIKEN cDNA 2310050L06 gene (2310... 272 3e-71
Alignment gnl|UG|Ssc#S6075443 UNL-P-FN-cu-b-04-0-UNL.s1 UNL-P-FN Sus scrof... 248 4e-64
Alignment gnl|UG|Bt#S12052296 481179 MARC 2BOV Bos taurus cDNA 5', mRNA se... 76 4e-12
Alignment gnl|UG|Mm#S9104653 Mus musculus RIKEN cDNA 2700064H14 gene (2700... 40 0.20
Alignment gnl|UG|Mm#S15943881 B0207D02-5 NIA Mouse Embryonic Germ Cell cDN... 38 0.78
Alignment gnl|UG|Mm#S8762011 Mus musculus PAX interacting (with transcript... 38 0.78
Alignment gnl|UG|Mm#S8088357 uq21f09.x1 Ren Stubbs mouse thymus Mus muscul... 38 0.78
Alignment gnl|UG|Bt#S12371394 BTU602600435.R1 CSEQFXL04 small intestine Bo... 38 0.78
>gnl|UG|Ssc#S18292191 BP143916 full-length enriched swine cDNA
library, adult ovary Sus scrofa cDNA clone OVR010027F12
5', mRNA sequence /clone=OVR010027F12 /clone_end=5'
/gb=BP143916 /gi=40393387 /ug=Ssc.11012 /len=793
Length = 793
Score = 1524 bits (769), Expect = 0.0
Identities = 782/785 (99%), Gaps = 1/785 (0%)
Strand = Plus / Plus
Query: 1 agcagcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcagcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctc 60
Query: 61 tcgcgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgcgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccgga 120
Query: 121 gacgcagggtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacgcagggtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaag 180
Query: 181 ctgactccagagcaattccacgtcacgagagaaaaagggacagaaccgcctttcagtggg 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgactccagagcgattccacgtcacgagagaaaaagggacagaaccgcctttcagtggg 240
Query: 241 acctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctgtgacagcccactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctgtgacagcccactc 300
Query: 301 ttcagctctgagaaaaagtactgctctggcactggatggccttcattttctgaggctcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcagctctgagaaaaagtactgctctggcactggatggccttcattttctgaggctcac 360
Query: 361 ggcacatctggctctgatgagagtgacacagggatcctgagacgtgtggacacctcgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcacatctggctctgatgagagtgacacagggatcctgagacgtgtggacacctcgctg 420
Query: 421 ggaacagctcgcacggaggttgtctgcaagcagtgcgaagctcaccttggccatgtgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaacagctcgcacggaggttgtctgcaagcagtgcgaagctcaccttggccatgtgttt 480
Query: 481 cctgatggacctgggcctacaggtcagaggttttgcatcaacagtgtggcactcaagttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctgatggacctgggcctacaggtcagaggttttgcatcaacagtgtggcactcaagttc 540
Query: 541 aaaccaaggaaacactgaccatcgccaggagtccctttctcttccaccctctcatttcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaccaaggaaacactgaccatcgccaggagtccctttctcttccaccctctcatttcca 600
Query: 601 aactcgattttcataatttatgcaaatgactagttttattaatgaccaaactaggctaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aactcgattttcataatttatgcaaatgactagttttattaatgaccaaactaggctaag 660
Query: 661 cttgctggcataccttctctaattcattacctggagtcagctccaccctggctctggctc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cttgctggcataccttctctaattcattacctggagtcagctccaccctggctctggctc 720
Query: 721 tggctagaatttcacggaatgacagaggggcagtcctttccctt-aatcaacatctgtgg 779
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 721 tgactagaatttcacggaatgacagaggggcagtcctttcccttaaatcaacatctgtgg 780
Query: 780 gcttt 784
|||||
Sbjct: 781 gcttt 785
>gnl|UG|Hs#S1824499 Homo sapiens pilin-like transcription factor
(PILB), mRNA /cds=(3,608) /gb=NM_012228 /gi=20149599
/ug=Hs.461420 /len=903
Length = 903
Score = 480 bits (242), Expect = e-134
Identities = 365/406 (89%)
Strand = Plus / Plus
Query: 158 ccaagagtgagtggcaaaagaagctgactccagagcaattccacgtcacgagagaaaaag 217
|||||||||||||||||||||| || || || ||||| ||| ||||||| |||||||| |
Sbjct: 208 ccaagagtgagtggcaaaagaaactaaccccggagcagttctacgtcacaagagaaaagg 267
Query: 218 ggacagaaccgcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcact 277
| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 268 gaacggaaccgcctttcagtgggatctacctgaataacaaggaagcaggaatgtatcatt 327
Query: 278 gtgtgtgctgtgacagcccactcttcagctctgagaaaaagtactgctctggcactggat 337
| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 328 gcgtgtgctgcgacagtccactcttcagttctgagaaaaagtactgctctggcactgggt 387
Query: 338 ggccttcattttctgaggctcacggcacatctggctctgatgagagtgacacagggatcc 397
||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||
Sbjct: 388 ggccttcgttttctgaggctcatggtacgtctggctctgatgaaagccacacagggatcc 447
Query: 398 tgagacgtgtggacacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcg 457
|||||||| |||| |||||| | ||| |||||||||| |||||||||||||||||||| |
Sbjct: 448 tgagacgtctggatacctcgttaggatcagctcgcacagaggttgtctgcaagcagtgtg 507
Query: 458 aagctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggttttgca 517
||||||| || || || ||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 508 aagctcatctaggtcacgtgtttcctgatggacctgggcccaatggtcagaggttttgca 567
Query: 518 tcaacagtgtggcactcaagttcaaaccaaggaaacactgaccatc 563
||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 568 tcaacagtgtggctttgaagttcaaaccaaggaaacactgaccatc 613
>gnl|UG|Mm#S9707197 Mus musculus RIKEN cDNA 2310050L06 gene
(2310050L06Rik), mRNA /cds=(48,575) /gb=NM_029619
/gi=27753987 /ug=Mm.27166 /len=1204
Length = 1204
Score = 272 bits (137), Expect = 3e-71
Identities = 317/377 (84%)
Strand = Plus / Plus
Query: 169 tggcaaaagaagctgactccagagcaattccacgtcacgagagaaaaagggacagaaccg 228
||||| ||||| ||||| || || || ||| | ||||| ||||| ||||| || ||| ||
Sbjct: 186 tggcagaagaaactgaccccggaacagttctatgtcaccagagagaaaggaactgaagcg 245
Query: 229 cctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctgt 288
||||||||||| | || |||| |||||||| |||| ||||| || ||||||||||||
Sbjct: 246 cctttcagtggaatgtatttgaacaacaaggagacagggatgtaccattgtgtgtgctgt 305
Query: 289 gacagcccactcttcagctctgagaaaaagtactgctctggcactggatggccttcattt 348
|| |||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||
Sbjct: 306 gatagcccactcttcagttctgagaagaagtactgttctggcaccggctggccttcattt 365
Query: 349 tctgaggctcacggcacatctggctctgatgagagtgacacagggatcctgagacgtgtg 408
||||||||| ||||| || ||||| ||||| ||| ||||||||||||||||||| ||
Sbjct: 366 tctgaggcttacggctcaaaaggctcagatgaaagtcacacagggatcctgagacgactg 425
Query: 409 gacacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcgaagctcacctt 468
||||| || | ||| |||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 426 gacacttccttaggatgtcctcgcatggaggtggtctgcaagcagtgtgaagctcacctt 485
Query: 469 ggccatgtgtttcctgatggacctgggcctacaggtcagaggttttgcatcaacagtgtg 528
||||||||||||||||||||||| ||| || || || |||||||||||||||||||||
Sbjct: 486 ggccatgtgtttcctgatggacccaagcccactggccaaaggttttgcatcaacagtgtg 545
Query: 529 gcactcaagttcaaacc 545
|| || |||||||||||
Sbjct: 546 gccctgaagttcaaacc 562
>gnl|UG|Ssc#S6075443 UNL-P-FN-cu-b-04-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-cu-b-04-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-cu-b-04-0-UNL /clone_end=3' /gb=BI185322
/gi=14659731 /ug=Ssc.11418 /len=734
Length = 734
Score = 248 bits (125), Expect = 4e-64
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 4 agcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctctcg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 agcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctctcg 112
Query: 64 cgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagac 172
Query: 124 gcagg 128
|||||
Sbjct: 173 gcagg 177
>gnl|UG|Bt#S12052296 481179 MARC 2BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=BI899213 /gi=16204144
/ug=Bt.10925 /len=549
Length = 549
Score = 75.8 bits (38), Expect = 4e-12
Identities = 102/122 (83%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 688 tacctggagtcagctccaccctggctctggctctggctagaatttcacggaatgacagag 747
|||||||||||| ||| |||||||||||||| || |||||||||||| ||||||||||
Sbjct: 7 tacctggagtcaactcagccctggctctggctttgactagaatttcacaaaatgacagag 66
Query: 748 gggcagtcctttcc-cttaatcaacatctgtgggctttgccaggaccagagggcatgact 806
|| | ||||| || ||| || ||||||||||||||| |||||||||| |||||||
Sbjct: 67 ggaaaactgtttccactaaattgacttctgtgggctttgcctggaccagaggacatgact 126
Query: 807 ct 808
||
Sbjct: 127 ct 128
>gnl|UG|Mm#S9104653 Mus musculus RIKEN cDNA 2700064H14 gene
(2700064H14Rik), mRNA /cds=(197,880) /gb=NM_026021
/gi=13385525 /ug=Mm.24730 /len=1232
Length = 1232
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 767 tcaacatctgtgggctttgccagg 790
||||||||||||||| ||||||||
Sbjct: 747 tcaacatctgtgggcgttgccagg 770
>gnl|UG|Mm#S15943881 B0207D02-5 NIA Mouse Embryonic Germ Cell cDNA
Library (Long) Mus musculus cDNA clone NIA:B0207D02
IMAGE:30104101 5', mRNA sequence
/clone=NIA:B0207D02_IMAGE:30104101 /clone_end=5'
/gb=CD538914 /gi=31586649 /ug=Mm.329126 /len=488
Length = 488
Score = 38.2 bits (19), Expect = 0.78
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 881 caagtggttcacagacatg 899
|||||||||||||||||||
Sbjct: 314 caagtggttcacagacatg 332
>gnl|UG|Mm#S8762011 Mus musculus PAX interacting (with
transcription-activation domain) protein 1 (Paxip1), mRNA
/cds=(272,3442) /gb=NM_018878 /gi=9256631 /ug=Mm.277190
/len=3882
Length = 3882
Score = 38.2 bits (19), Expect = 0.78
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 175 aagaagctgactccagagc 193
|||||||||||||||||||
Sbjct: 2807 aagaagctgactccagagc 2825
>gnl|UG|Mm#S8088357 uq21f09.x1 Ren Stubbs mouse thymus Mus musculus
cDNA clone IMAGE:2803145 3'. /clone=IMAGE:2803145
/clone_end=3' /gb=AW822486 /gi=7915563 /ti=111522287
/ug=Mm.213054 /len=715
Length = 715
Score = 38.2 bits (19), Expect = 0.78
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 708 ctggctctggctctggcta 726
|||||||||||||||||||
Sbjct: 684 ctggctctggctctggcta 702
>gnl|UG|Bt#S12371394 BTU602600435.R1 CSEQFXL04 small intestine Bos
taurus cDNA, mRNA sequence /gb=CB166879 /gi=28153004
/ug=Bt.16072 /len=759
Length = 759
Score = 38.2 bits (19), Expect = 0.78
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 633 gttttattaatgaccaaac 651
|||||||||||||||||||
Sbjct: 731 gttttattaatgaccaaac 749
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,238
Number of Sequences: 238354
Number of extensions: 151238
Number of successful extensions: 11725
Number of sequences better than 10.0: 50
length of query: 912
length of database: 272,110,533
effective HSP length: 19
effective length of query: 893
effective length of database: 267,581,807
effective search space: 238950553651
effective search space used: 238950553651
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)