>20040204C-002392 (20040204C-002392) 20040204C-002392 ACATGCGCCA CAAAAGGTTC CGATCCGGAA ACTACCCATC CTCGTTAAGC AACGAGACAG ACCGCCTGGT ACACTGGTGC CACGGGGCGC CCGGCGTCAT CCACACGCTC ATGCAGGCGT ACAAGGTGTT TAAGGAGGAG AAGTACCTGA GGGACGCCGT GGAGTGCAGC GACGTGATTT GGCAGCGGGG CCTGCTGCGC AAGGGCTACG GCATCTGCCA CGGGACTGCG GGCAACGGCT ACTCCTTCCT CTCCCTTTAC CGCCTCACGC AGGACAAGAA GTACCTCTAC CGAGCTTGCA AGTTTGCAGA GTGGTGTCTG GAGTACGGAG CACATGGTTG CCGCATTCCC GACAGGCCCT ACTCTCTCTT CGAAGGCATG GCCGGCGCCA TTCACTTCCT CTCCGACATC CTGGCCCCCG AGACAGCACG GTTTCCAGCA TTTGAACTCG GCTCTTCAGA GAGGGATCCA AAGGTGCAAA AAGACTCCTA AGGGACCCGA CGGGACCACA GGCCGCCAGG TTGCCTGGCG CCTGACACAG AAGCCACCGT GCATCCTGAG GAAGGGAGGA CGGAGGGAGC AGAGCCCCGC AGACCCCCGC CCCGCCAGCC TGCTGTGCTC CCCTCGCTGG TGTCAGCGTG ACGTCTCCGT GTCCAGTGCT GCGTAATGTT TGCATGTCCC TCGGTGTTTG CTCTCCGTAG GCGTAGGTTG TTCTCAGCGG AAGCCCTTCT CTGTCCATGA GCCCGAGCTG GCCGTGCATG AGGGCACACA GCAGCCCCTT CTCCGTACCC AATAAAGCGG GGTGCTTCTG TATTGGCAGA CAGGACACAG GCAGGTGGTG TCTCTCTTAT GTACCAGAAA GACTCTCTTT TAAGATGCCA TCCCAGTGTG AGACTTTTCC CAGCATTTCC TGTGGGACCC TTTTGGGGGA GCTTGAGAGA AAGACTGCTC CAGAAATGAA AAGAAATAGC GGAGGTAGAG GGGCTTTCGC TGGA
Query= 20040204C-002392 (20040204C-002392) 20040204C-002392
(994 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18292768 BP144493 full-length enriched swine cDNA li... 1443 0.0
Alignment gnl|UG|Hs#S2294018 Homo sapiens LanC lantibiotic synthetase comp... 472 e-131
Alignment gnl|UG|Mm#S9640500 Mus musculus RIKEN cDNA 1700003F10 gene (1700... 258 5e-67
Alignment gnl|UG|Hs#S5472221 AGENCOURT_10275836 NIH_MGC_82 Homo sapiens cD... 42 0.054
Alignment gnl|UG|Hs#S1731032 Homo sapiens transmembrane 4 superfamily memb... 42 0.054
Alignment gnl|UG|Bt#S14835076 591841 MARC 6BOV Bos taurus cDNA 5', mRNA se... 40 0.22
Alignment gnl|UG|Hs#S4630812 Homo sapiens KIAA0602 protein, mRNA (cDNA clo... 38 0.85
Alignment gnl|UG|Hs#S15898529 Homo sapiens cDNA clone IMAGE:5268504, parti... 38 0.85
Alignment gnl|UG|Mm#S10854175 Mus musculus 16 days embryo head cDNA, RIKEN... 38 0.85
Alignment gnl|UG|Hs#S15573791 BX362771 Homo sapiens HELA CELLS COT 25-NORM... 36 3.4
>gnl|UG|Ssc#S18292768 BP144493 full-length enriched swine cDNA
library, adult ovary Sus scrofa cDNA clone OVR010037H03
5', mRNA sequence /clone=OVR010037H03 /clone_end=5'
/gb=BP144493 /gi=40393964 /ug=Ssc.5603 /len=763
Length = 763
Score = 1443 bits (728), Expect = 0.0
Identities = 745/751 (99%), Gaps = 6/751 (0%)
Strand = Plus / Plus
Query: 15 aggttccgatccggaaactacccatcctcgttaagcaacgagacagaccgcctggtacac 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 aggttccgatccggaaactacccatcctcgttaagcaacgagacagaccgcctggtacac 72
Query: 75 tggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgtacaaggtgtttaag 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgtacaaggtgtttaag 132
Query: 135 gaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggcagcggggcctg 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggcagcggggcctg 192
Query: 195 ctgcgcaagggctacggcatctgccacgggactgcgggcaacggctactccttcctctcc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctgcgcaagggctacggcatctgccacgggactgcgggcaacggctactccttcctctcc 252
Query: 255 ctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaagtttgcagagtgg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaagtttgcagagtgg 312
Query: 315 tgtctggagtacggagcacatggttgccgcattcccgacaggccctactctctcttcgaa 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtctggagtacggagcacatggttgccgcattcccgacaggccctactctctcttcgaa 372
Query: 375 ggcatggccggcgccattcacttcctctccgacatcctggcccccgagacagcacggttt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcatggccggcgccattcacttcctctccgacatcctggcccccgagacagcacggttt 432
Query: 435 ccagcatttgaactcggctcttcagagagggatccaaaggtgcaaaaagactcctaaggg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccagcatttgaactcggctcttcagagagggatccaaaggtgcaaaaagactcctaaggg 492
Query: 495 acccgacgggaccacaggccgccaggttgcctggcgcctgacacagaagccaccgtgcat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acccgacgggaccacaggccgccaggttgcctggcgcctgacacagaagccaccgtgcat 552
Query: 555 cctgaggaagggaggacggagggagcagagccccgcagacccccgccccgccagcctgct 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cctgaggaagggaggacggagggagcagagccccgcagacccccgccccgccagcctgct 612
Query: 615 ------gtgctcccctcgctggtgtcagcgtgacgtctccgtgtccagtgctgcgtaatg 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtgaccgtgctcccctcgctggtgtcagcgtgacgtctccgtgtccagtgctgcgtaatg 672
Query: 669 tttgcatgtccctcggtgtttgctctccgtaggcgtaggttgttctcagcggaagccctt 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttgcatgtccctcggtgtttgctctccgtaggcgtaggttgttctcagcggaagccctt 732
Query: 729 ctctgtccatgagcccgagctggccgtgcat 759
|||||||||||||||||||||||||||||||
Sbjct: 733 ctctgtccatgagcccgagctggccgtgcat 763
>gnl|UG|Hs#S2294018 Homo sapiens LanC lantibiotic synthetase component
C-like 2 (bacterial) (LANCL2), mRNA /cds=(187,1539)
/gb=NM_018697 /gi=19923550 /ug=Hs.134342 /len=3972
Length = 3972
Score = 472 bits (238), Expect = e-131
Identities = 421/482 (87%)
Strand = Plus / Plus
Query: 4 tgcgccacaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacagacc 63
|||||||||||| |||||||| || || |||||||| || |||||||| || |||||||
Sbjct: 1073 tgcgccacaaaaaattccgatctgggaattacccatcatcattaagcaatgaaacagacc 1132
Query: 64 gcctggtacactggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgtaca 123
| ||||| |||||||||||||| || || || |||||||||| |||||||||||||||||
Sbjct: 1133 ggctggtgcactggtgccacggcgccccgggggtcatccacatgctcatgcaggcgtaca 1192
Query: 124 aggtgtttaaggaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggc 183
|||| |||||||||||||||||| ||| || ||| ||||||| ||||| ||||||||||
Sbjct: 1193 aggtctttaaggaggagaagtacttgaaagaggccatggagtgtagcgatgtgatttggc 1252
Query: 184 agcggggcctgctgcgcaagggctacggcatctgccacgggactgcgggcaacggctact 243
|||| || ||||||| ||||||||||| || ||||| |||||||| ||||||||||| |
Sbjct: 1253 agcgaggtttgctgcggaagggctacgggatatgccatgggactgctggcaacggctatt 1312
Query: 244 ccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaagt 303
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1313 ccttcctgtccctttaccgtctcacgcaggataagaagtacctctaccgagcttgcaagt 1372
Query: 304 ttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgacaggccctact 363
|||||||||||||||| || ||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 1373 ttgcagagtggtgtctagattacggagcacacgggtgccgcattcctgacagaccctatt 1432
Query: 364 ctctcttcgaaggcatggccggcgccattcacttcctctccgacatcctggcccccgaga 423
| ||||| ||||||||||| ||||| |||||||| ||||| || |||||| || ||||
Sbjct: 1433 cgctctttgaaggcatggctggcgctattcactttctctctgatgtcctgggaccagaga 1492
Query: 424 cagcacggtttccagcatttgaactcggctcttcagagagggatccaaaggtgcaaaaag 483
|| |||||||||||||||||||||| | |||||| |||||||| ||||||||||||||
Sbjct: 1493 catcacggtttccagcatttgaacttgactcttcgaagagggattaaaaggtgcaaaaag 1552
Query: 484 ac 485
||
Sbjct: 1553 ac 1554
>gnl|UG|Mm#S9640500 Mus musculus RIKEN cDNA 1700003F10 gene
(1700003F10Rik), mRNA /cds=(425,1777) /gb=NM_133737
/gi=19526935 /ug=Mm.274904 /len=2520
Length = 2520
Score = 258 bits (130), Expect = 5e-67
Identities = 370/450 (82%)
Strand = Plus / Plus
Query: 4 tgcgccacaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacagacc 63
||||||| |||| |||||||| ||||| || ||||| || |||||||| || ||||| |
Sbjct: 1311 tgcgccataaaaaattccgatctggaaattatccatcatcattaagcaatgaaacagatc 1370
Query: 64 gcctggtacactggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgtaca 123
| |||| ||||||||||| || || || || ||||||||| |||| | ||||| |||
Sbjct: 1371 gattggtccactggtgccatggtgctccaggagtcatccacgtgctcttacaggcatacc 1430
Query: 124 aggtgtttaaggaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggc 183
|||| ||||||||||| || ||| ||| || ||| ||||||| ||||| ||||||||||
Sbjct: 1431 aggtttttaaggaggaaaaatacttgaaagaggccatggagtgtagcgatgtgatttggc 1490
Query: 184 agcggggcctgctgcgcaagggctacggcatctgccacgggactgcgggcaacggctact 243
|||| || ||||| || || || || || |||||||| || || | ||||| ||||| |
Sbjct: 1491 agcgaggtctgctccggaaaggttatggaatctgccatggaacctctggcaatggctatt 1550
Query: 244 ccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaagt 303
|||| | |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 1551 cctttttgtccctttatcgcctgacgcaggataagaagtatctctatcgagcttgtaagt 1610
Query: 304 ttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgacaggccctact 363
|||||||||||||||| || |||||||||||||| ||||||||||| ||||| || || |
Sbjct: 1611 ttgcagagtggtgtctagattacggagcacatggatgccgcattcctgacagaccttatt 1670
Query: 364 ctctcttcgaaggcatggccggcgccattcacttcctctccgacatcctggcccccgaga 423
| ||||| ||||| ||||| || || |||||||||| || |||||| ||| || ||||
Sbjct: 1671 ccctctttgaaggtatggctggtgctgttcacttcctttctgacatcttggtaccagaga 1730
Query: 424 cagcacggtttccagcatttgaactcggct 453
||||||||||||||||||||||||| ||||
Sbjct: 1731 cagcacggtttccagcatttgaacttggct 1760
>gnl|UG|Hs#S5472221 AGENCOURT_10275836 NIH_MGC_82 Homo sapiens cDNA
clone IMAGE:6592840 5', mRNA sequence
/clone=IMAGE:6592840 /clone_end=5' /gb=BU561683
/gi=22911979 /ug=Hs.462187 /len=756
Length = 756
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 949 tccagaaatgaaaagaaatag 969
|||||||||||||||||||||
Sbjct: 393 tccagaaatgaaaagaaatag 373
>gnl|UG|Hs#S1731032 Homo sapiens transmembrane 4 superfamily member
tetraspan NET-5 (NET-5), mRNA /cds=(127,846)
/gb=NM_006675 /gi=21264572 /ug=Hs.129826 /len=1432
Length = 1432
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 cagagccccgcagacccccgccccgccag 608
||||| || ||||||||||||||||||||
Sbjct: 1298 cagaggccggcagacccccgccccgccag 1270
>gnl|UG|Bt#S14835076 591841 MARC 6BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=CB419005 /gi=29183628
/ug=Bt.12194 /len=730
Length = 730
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 600 ccccgccagcctgctgtgct 619
||||||||||||||||||||
Sbjct: 555 ccccgccagcctgctgtgct 536
>gnl|UG|Hs#S4630812 Homo sapiens KIAA0602 protein, mRNA (cDNA clone
IMAGE:4824255), partial cds /gb=BC028418 /gi=22382100
/ug=Hs.436281 /len=3463
Length = 3463
Score = 38.2 bits (19), Expect = 0.85
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 153 gacgccgtggagtgcagcgacgt 175
|||| ||||||||||||||||||
Sbjct: 2801 gacggcgtggagtgcagcgacgt 2823
>gnl|UG|Hs#S15898529 Homo sapiens cDNA clone IMAGE:5268504, partial
cds /gb=BC052945 /gi=31324932 /ug=Hs.390285 /len=3651
Length = 3651
Score = 38.2 bits (19), Expect = 0.85
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 444 gaactcggctcttcagaga 462
|||||||||||||||||||
Sbjct: 2649 gaactcggctcttcagaga 2667
>gnl|UG|Mm#S10854175 Mus musculus 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130073D18
product:unknown EST, full insert sequence /gb=AK081741
/gi=26100149 /ug=Mm.227766 /len=2237
Length = 2237
Score = 38.2 bits (19), Expect = 0.85
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 720 gaagcccttctctgtccat 738
|||||||||||||||||||
Sbjct: 328 gaagcccttctctgtccat 310
>gnl|UG|Hs#S15573791 BX362771 Homo sapiens HELA CELLS COT
25-NORMALIZED Homo sapiens cDNA clone CS0DK003YP12
3-PRIME, mRNA sequence /clone=CS0DK003YP12 /clone_end=3'
/gb=BX362771 /gi=30384660 /ug=Hs.513515 /len=1005
Length = 1005
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 815 ggcagacaggacacaggc 832
||||||||||||||||||
Sbjct: 168 ggcagacaggacacaggc 185
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 149,106
Number of Sequences: 238354
Number of extensions: 149106
Number of successful extensions: 11361
Number of sequences better than 10.0: 21
length of query: 994
length of database: 272,110,533
effective HSP length: 19
effective length of query: 975
effective length of database: 267,581,807
effective search space: 260892261825
effective search space used: 260892261825
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)